Wall clock time and date at job start Tue Mar 31 2020 00:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47222 * 240.00088 * 3 2 1 5 5 H 1.48496 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47144 * 120.00287 * 3 2 1 7 7 C 1.37879 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00064 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.88673 * 303.88120 * 9 7 2 11 11 C 1.55160 * 111.00321 * 179.97438 * 9 7 2 12 12 C 1.54316 * 102.94268 * 206.38737 * 11 9 7 13 13 N 1.47026 * 107.27365 * 22.19228 * 12 11 9 14 14 C 1.34771 * 125.65100 * 180.79395 * 13 12 11 15 15 O 1.21600 * 120.00294 * 180.02562 * 14 13 12 16 16 C 1.47422 * 120.00229 * 0.02612 * 14 13 12 17 17 C 1.37997 * 125.85394 * 180.02562 * 16 14 13 18 18 C 1.39309 * 107.53421 * 179.97438 * 17 16 14 19 19 C 1.38350 * 107.40356 * 0.02562 * 18 17 16 20 20 C 1.46429 * 125.95005 * 180.02562 * 19 18 17 21 21 O 1.21344 * 119.99908 * 180.02562 * 20 19 18 22 22 N 1.36608 * 125.84472 * 359.71520 * 16 14 13 23 23 H 0.97001 * 125.66512 * 359.96934 * 22 16 14 24 24 C 1.47425 * 108.70074 * 1.05989 * 13 12 11 25 25 H 0.96996 * 119.99737 * 359.97438 * 1 2 3 26 26 H 0.96697 * 113.99722 * 56.11850 * 10 9 7 27 27 H 1.08997 * 110.71793 * 88.02067 * 11 9 7 28 28 H 1.09002 * 110.71871 * 324.75413 * 11 9 7 29 29 H 1.09004 * 109.88447 * 262.78098 * 12 11 9 30 30 H 1.08996 * 110.01243 * 141.68527 * 12 11 9 31 31 H 1.08006 * 126.23229 * 359.97438 * 17 16 14 32 32 H 1.07996 * 126.30094 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.00142 * 0.02562 * 20 19 18 34 34 H 1.09001 * 110.36478 * 94.71036 * 24 13 12 35 35 H 1.08998 * 110.36859 * 217.03414 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7051 -0.0018 12 6 1.3973 -4.8212 -0.6701 13 7 0.3452 -4.1679 -1.4625 14 6 -0.5993 -4.7998 -2.1870 15 8 -1.4232 -4.1549 -2.8067 16 6 -0.6339 -6.2731 -2.2282 17 6 -1.5425 -7.0410 -2.9273 18 6 -1.2248 -8.3782 -2.6999 19 6 -0.1240 -8.4053 -1.8623 20 6 0.5480 -9.6072 -1.3644 21 8 1.5093 -9.5051 -0.6309 22 7 0.2319 -7.1118 -1.5854 23 1 0.9742 -6.8371 -1.0247 24 6 0.4986 -2.7069 -1.3386 25 1 -0.4849 0.8400 0.0004 26 1 -0.2773 -1.8357 1.1505 27 1 2.4982 -3.9831 1.0167 28 1 3.1167 -3.4806 -0.5908 29 1 0.9464 -5.4555 0.0932 30 1 2.0337 -5.4204 -1.3212 31 1 -2.3525 -6.6725 -3.5394 32 1 -1.7425 -9.2359 -3.1031 33 1 0.1881 -10.5846 -1.6499 34 1 1.0861 -2.3153 -2.1690 35 1 -0.4782 -2.2245 -1.3033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:29 Heat of formation + Delta-G solvation = -65.222532 kcal Electronic energy + Delta-G solvation = -21633.392205 eV Core-core repulsion = 18211.686596 eV Total energy + Delta-G solvation = -3421.705608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52167 -39.31581 -38.52122 -37.24028 -34.53598 -32.24124 -31.44616 -30.54930 -29.80471 -28.04839 -25.82386 -24.43804 -22.86553 -20.95497 -20.66866 -19.91975 -19.73259 -17.49659 -17.26290 -16.36885 -15.91823 -15.56332 -15.33515 -14.82314 -14.75711 -14.45116 -14.04644 -13.70018 -13.35004 -13.15380 -12.87089 -12.86823 -12.73396 -12.19073 -11.72020 -11.60249 -11.11400 -10.94775 -10.80513 -10.58468 -10.30089 -10.28436 -9.76370 -9.52437 -9.20282 -8.77282 -8.56402 -8.42261 -7.96814 -6.37666 -4.47948 0.74737 2.00184 2.84160 2.95287 3.16843 3.23390 3.24486 3.39564 3.56396 4.14301 4.19549 4.66824 4.89231 4.98924 5.07213 5.11019 5.18849 5.30078 5.53652 5.77166 5.83215 5.92310 6.01410 6.30651 6.39870 6.55408 6.67536 6.68683 6.79320 7.07230 7.13214 7.20577 7.23520 7.65269 7.87397 7.93887 8.45227 8.55692 9.22007 9.35630 10.69829 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.004529 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.461861 B = 6180.750941 C = 6780.243297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.605 5.605 14 C 0.586 3.414 15 O -0.529 6.529 16 C 0.014 3.986 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.089 4.089 20 C 0.407 3.593 21 O -0.475 6.475 22 N -0.507 5.507 23 H 0.425 0.575 24 C 0.093 3.907 25 H 0.273 0.727 26 H 0.388 0.612 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -14.857 -3.913 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.210 3.790 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.034 4.034 13 N -0.337 5.337 14 C 0.373 3.627 15 O -0.406 6.406 16 C -0.106 4.106 17 C -0.164 4.164 18 C -0.155 4.155 19 C -0.204 4.204 20 C 0.267 3.733 21 O -0.348 6.348 22 N -0.108 5.108 23 H 0.270 0.730 24 C -0.028 4.028 25 H 0.083 0.917 26 H 0.240 0.760 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.130 -14.831 -3.641 15.273 hybrid contribution 0.320 1.511 -0.003 1.544 sum 0.450 -13.321 -3.644 13.817 Atomic orbital electron populations 1.69548 1.06073 1.28319 1.49410 1.25087 0.95058 0.99896 0.93104 0.86404 0.79502 0.81822 0.78873 1.19942 1.20978 1.19929 1.21436 0.93727 0.89939 1.52825 0.91366 1.19579 0.85688 0.91673 0.82044 1.86062 1.51098 1.53102 1.49234 1.22632 0.97901 0.94329 1.00444 1.22215 0.89939 0.97302 0.93923 1.48729 1.28609 1.10256 1.46100 1.16896 0.81343 0.84436 0.80024 1.90809 1.39109 1.65751 1.44933 1.21078 0.96077 0.90903 1.02546 1.21259 1.00617 0.91898 1.02652 1.21431 0.96671 0.97492 0.99941 1.21695 1.03364 0.86238 1.09090 1.23421 0.81346 0.91827 0.76747 1.90594 1.24565 1.90299 1.29367 1.42799 1.25257 1.05472 1.37276 0.72986 1.23420 1.03020 0.75560 1.00821 0.91656 0.75971 0.90198 0.89950 0.92121 0.92659 0.82759 0.82767 0.85703 0.91621 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 10.71 55.43 0.59 -22.72 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.66 8.25 -34.44 -0.28 -13.94 16 8 H 0.07 1.67 7.76 -52.49 -0.41 1.27 16 9 C 0.25 5.90 0.89 -89.62 -0.08 5.82 16 10 O -0.58 -14.72 13.18 -35.23 -0.46 -15.18 16 11 C -0.12 -2.20 6.13 -24.90 -0.15 -2.35 16 12 C 0.09 1.54 5.11 -3.07 -0.02 1.52 16 13 N -0.60 -12.23 3.33 -171.79 -0.57 -12.80 16 14 C 0.59 11.75 7.85 -12.52 -0.10 11.66 16 15 O -0.53 -12.21 17.13 5.28 0.09 -12.12 16 16 C 0.01 0.23 6.88 -82.09 -0.56 -0.33 16 17 C -0.14 -1.89 10.60 -39.27 -0.42 -2.30 16 18 C -0.13 -1.33 10.84 -39.14 -0.42 -1.76 16 19 C -0.09 -1.01 7.03 -82.23 -0.58 -1.59 16 20 C 0.41 3.76 11.66 34.03 0.40 4.16 16 21 O -0.47 -6.27 17.92 5.50 0.10 -6.17 16 22 N -0.51 -7.08 5.62 -5.97 -0.03 -7.11 16 23 H 0.43 5.80 4.85 -40.82 -0.20 5.60 16 24 C 0.09 2.16 5.62 -2.53 -0.01 2.15 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.39 10.13 6.93 45.56 0.32 10.44 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.46 8.01 -51.93 -0.42 1.04 16 29 H 0.06 0.99 7.12 -51.93 -0.37 0.62 16 30 H 0.06 0.80 7.19 -51.93 -0.37 0.43 16 31 H 0.15 1.97 8.06 -52.48 -0.42 1.54 16 32 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.07 1.55 8.03 -51.93 -0.42 1.14 16 35 H 0.09 2.28 7.64 -51.93 -0.40 1.89 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -30.57 303.06 -6.15 -36.73 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -3.09 Total: 15.20 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.33 Total: 4.76 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.01 Total: -42.63 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.28 Total: -33.48 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.57 -6.15 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.496 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds