Wall clock time and date at job start Tue Mar 31 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47222 * 240.00088 * 3 2 1 5 5 H 1.48496 * 109.47365 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47144 * 120.00287 * 3 2 1 7 7 C 1.37879 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00064 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.88673 * 303.88120 * 9 7 2 11 11 C 1.55160 * 111.00321 * 179.97438 * 9 7 2 12 12 C 1.54316 * 102.94268 * 206.38737 * 11 9 7 13 13 N 1.47026 * 107.27365 * 22.19228 * 12 11 9 14 14 C 1.34771 * 125.65100 * 180.79395 * 13 12 11 15 15 O 1.21600 * 120.00294 * 180.02562 * 14 13 12 16 16 C 1.47422 * 120.00229 * 0.02612 * 14 13 12 17 17 C 1.37997 * 125.85394 * 180.02562 * 16 14 13 18 18 C 1.39309 * 107.53421 * 179.97438 * 17 16 14 19 19 C 1.38350 * 107.40356 * 0.02562 * 18 17 16 20 20 C 1.46429 * 125.95005 * 180.02562 * 19 18 17 21 21 O 1.21344 * 119.99908 * 180.02562 * 20 19 18 22 22 N 1.36608 * 125.84472 * 359.71520 * 16 14 13 23 23 H 0.97001 * 125.66512 * 359.96934 * 22 16 14 24 24 C 1.47425 * 108.70074 * 1.05989 * 13 12 11 25 25 H 0.96996 * 119.99737 * 359.97438 * 1 2 3 26 26 H 0.96697 * 113.99722 * 56.11850 * 10 9 7 27 27 H 1.08997 * 110.71793 * 88.02067 * 11 9 7 28 28 H 1.09002 * 110.71871 * 324.75413 * 11 9 7 29 29 H 1.09004 * 109.88447 * 262.78098 * 12 11 9 30 30 H 1.08996 * 110.01243 * 141.68527 * 12 11 9 31 31 H 1.08006 * 126.23229 * 359.97438 * 17 16 14 32 32 H 1.07996 * 126.30094 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.00142 * 0.02562 * 20 19 18 34 34 H 1.09001 * 110.36478 * 94.71036 * 24 13 12 35 35 H 1.08998 * 110.36859 * 217.03414 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7051 -0.0018 12 6 1.3973 -4.8212 -0.6701 13 7 0.3452 -4.1679 -1.4625 14 6 -0.5993 -4.7998 -2.1870 15 8 -1.4232 -4.1549 -2.8067 16 6 -0.6339 -6.2731 -2.2282 17 6 -1.5425 -7.0410 -2.9273 18 6 -1.2248 -8.3782 -2.6999 19 6 -0.1240 -8.4053 -1.8623 20 6 0.5480 -9.6072 -1.3644 21 8 1.5093 -9.5051 -0.6309 22 7 0.2319 -7.1118 -1.5854 23 1 0.9742 -6.8371 -1.0247 24 6 0.4986 -2.7069 -1.3386 25 1 -0.4849 0.8400 0.0004 26 1 -0.2773 -1.8357 1.1505 27 1 2.4982 -3.9831 1.0167 28 1 3.1167 -3.4806 -0.5908 29 1 0.9464 -5.4555 0.0932 30 1 2.0337 -5.4204 -1.3212 31 1 -2.3525 -6.6725 -3.5394 32 1 -1.7425 -9.2359 -3.1031 33 1 0.1881 -10.5846 -1.6499 34 1 1.0861 -2.3153 -2.1690 35 1 -0.4782 -2.2245 -1.3033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349456348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:28 Heat of formation + Delta-G solvation = -88.788895 kcal Electronic energy + Delta-G solvation = -21634.414119 eV Core-core repulsion = 18211.686596 eV Total energy + Delta-G solvation = -3422.727523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58916 -40.76811 -39.51689 -38.89786 -36.31424 -34.21542 -32.58868 -31.99111 -30.97528 -29.72568 -27.46406 -25.79660 -24.21299 -22.14219 -21.76547 -21.45138 -20.98939 -19.27004 -18.75267 -17.60356 -17.25286 -17.00577 -16.69608 -16.45517 -16.07946 -15.83219 -15.16703 -15.05583 -14.95838 -14.70997 -14.27714 -14.08987 -13.66276 -13.65230 -13.53770 -13.37922 -12.86625 -12.64801 -12.42737 -12.33630 -12.23558 -11.47688 -11.31814 -10.98876 -10.69983 -10.44338 -10.16064 -9.79308 -9.35783 -8.30948 -6.48631 -0.20564 0.94538 1.42211 1.42849 1.51300 1.72466 2.00969 2.12104 2.21495 2.35662 2.94731 3.35953 3.41166 3.55718 3.91852 3.95230 4.06998 4.18959 4.23064 4.32823 4.48152 4.59278 4.87624 4.90943 4.94383 5.04042 5.10709 5.24760 5.33967 5.48879 5.69740 5.78428 5.95700 6.12871 6.38888 6.46998 6.59561 6.90452 7.23617 7.31922 8.75000 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.004529 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.461861 B = 6180.750941 C = 6780.243297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.235 3.765 10 O -0.592 6.592 11 C -0.110 4.110 12 C 0.095 3.905 13 N -0.611 5.611 14 C 0.579 3.421 15 O -0.576 6.576 16 C -0.028 4.028 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.082 4.082 20 C 0.420 3.580 21 O -0.514 6.514 22 N -0.515 5.515 23 H 0.424 0.576 24 C 0.105 3.895 25 H 0.272 0.728 26 H 0.379 0.621 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.205 0.795 33 H 0.194 0.806 34 H 0.053 0.947 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 -18.023 -4.236 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.174 4.174 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.091 0.909 9 C 0.194 3.806 10 O -0.401 6.401 11 C -0.148 4.148 12 C -0.027 4.027 13 N -0.343 5.343 14 C 0.370 3.630 15 O -0.457 6.457 16 C -0.146 4.146 17 C -0.164 4.164 18 C -0.134 4.134 19 C -0.197 4.197 20 C 0.282 3.718 21 O -0.389 6.389 22 N -0.116 5.116 23 H 0.268 0.732 24 C -0.017 4.017 25 H 0.082 0.918 26 H 0.230 0.770 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.222 0.778 33 H 0.210 0.790 34 H 0.071 0.929 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.018 -18.033 -3.957 18.490 hybrid contribution 0.019 2.364 0.080 2.365 sum 1.037 -15.669 -3.877 16.175 Atomic orbital electron populations 1.69668 1.07300 1.28792 1.50035 1.25851 0.95746 1.02993 0.92799 0.85449 0.78252 0.78012 0.78994 1.19418 1.21051 1.19377 1.21788 0.94156 0.91006 1.52794 0.90891 1.19828 0.86126 0.93270 0.81374 1.86050 1.51245 1.52681 1.50141 1.22642 0.97568 0.92895 1.01699 1.22315 0.89313 0.96749 0.94353 1.48744 1.29744 1.09026 1.46795 1.17530 0.80261 0.86356 0.78855 1.90758 1.40728 1.67360 1.46819 1.20538 0.99055 0.88739 1.06318 1.21560 0.99792 0.93440 1.01657 1.21922 0.95773 0.97208 0.98506 1.22573 1.03246 0.85930 1.07971 1.24418 0.79791 0.92745 0.74829 1.90608 1.26470 1.90650 1.31202 1.42804 1.25071 1.06286 1.37422 0.73243 1.22972 1.00465 0.77715 1.00586 0.91831 0.76999 0.89155 0.88486 0.91121 0.89397 0.82698 0.77792 0.79038 0.92881 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 10.71 21.45 0.23 -49.56 16 2 C 0.03 1.39 5.29 84.65 0.45 1.84 16 3 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.56 -28.73 8.25 25.60 0.21 -28.52 16 8 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 9 C 0.23 11.32 0.89 -10.15 -0.01 11.31 16 10 O -0.59 -30.84 13.18 -148.98 -1.96 -32.81 16 11 C -0.11 -4.15 6.13 31.78 0.19 -3.96 16 12 C 0.10 3.20 5.11 86.73 0.44 3.65 16 13 N -0.61 -25.54 3.33 -815.68 -2.71 -28.26 16 14 C 0.58 24.17 7.85 86.66 0.68 24.85 16 15 O -0.58 -28.24 17.13 -4.03 -0.07 -28.31 16 16 C -0.03 -0.89 6.88 40.76 0.28 -0.61 16 17 C -0.14 -3.51 10.60 22.47 0.24 -3.27 16 18 C -0.11 -1.76 10.84 22.55 0.24 -1.51 16 19 C -0.08 -1.53 7.03 40.50 0.28 -1.25 16 20 C 0.42 5.64 11.66 69.95 0.82 6.45 16 21 O -0.51 -11.80 17.92 -3.23 -0.06 -11.86 16 22 N -0.52 -13.39 5.62 -172.80 -0.97 -14.36 16 23 H 0.42 10.84 4.85 -92.71 -0.45 10.39 16 24 C 0.11 5.17 5.62 86.86 0.49 5.66 16 25 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.38 20.85 6.93 -74.06 -0.51 20.33 16 27 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.10 3.33 8.01 -2.39 -0.02 3.31 16 29 H 0.07 2.24 7.12 -2.38 -0.02 2.22 16 30 H 0.09 2.40 7.19 -2.39 -0.02 2.38 16 31 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.05 2.66 8.03 -2.39 -0.02 2.64 16 35 H 0.05 2.64 7.64 -2.39 -0.02 2.63 16 Total: -1.00 -71.39 303.06 0.98 -70.40 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.18 Total: 36.83 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 4.32 Total: 14.64 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.45 Total: -92.18 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -2.09 Total: -72.97 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -71.39 0.98 -70.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.384 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds