Wall clock time and date at job start Tue Mar 31 2020 00:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00445 * 2 1 4 4 H 1.48500 * 109.47110 * 264.99199 * 3 2 1 5 5 H 1.48499 * 109.47256 * 24.99339 * 3 2 1 6 6 H 1.48500 * 109.47359 * 144.99439 * 3 2 1 7 7 C 1.37879 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00148 * 190.18872 * 7 2 1 9 9 C 1.50705 * 120.00207 * 10.18883 * 7 2 1 10 10 O 1.42896 * 113.27808 * 52.41133 * 9 7 2 11 11 C 1.53492 * 114.20620 * 185.47826 * 9 7 2 12 12 N 1.47061 * 87.98615 * 139.65595 * 11 9 7 13 13 C 1.34781 * 136.06121 * 152.84235 * 12 11 9 14 14 O 1.21278 * 119.99640 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00139 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47594 * 54.99948 * 15 13 12 17 17 O 1.42901 * 109.47236 * 175.00029 * 15 13 12 18 18 C 1.50700 * 109.47328 * 294.99947 * 15 13 12 19 19 C 1.38228 * 119.62116 * 125.01961 * 18 15 13 20 20 C 1.38627 * 119.16239 * 179.74579 * 19 18 15 21 21 C 1.38671 * 118.41935 * 0.47849 * 20 19 18 22 22 C 1.38189 * 119.16273 * 359.50135 * 21 20 19 23 23 N 1.31855 * 119.61439 * 305.00297 * 18 15 13 24 24 C 1.47063 * 87.88462 * 333.09954 * 12 11 9 25 25 H 0.97001 * 119.99448 * 0.02562 * 1 2 3 26 26 H 0.96697 * 114.00628 * 317.07843 * 10 9 7 27 27 H 1.08998 * 113.47116 * 24.87532 * 11 9 7 28 28 H 1.09004 * 113.52156 * 254.44650 * 11 9 7 29 29 H 0.96698 * 114.00120 * 60.00130 * 17 15 13 30 30 H 1.08008 * 120.41542 * 0.02562 * 19 18 15 31 31 H 1.07994 * 120.79042 * 180.23317 * 20 19 18 32 32 H 1.08000 * 120.42227 * 179.77579 * 21 20 19 33 33 H 1.08000 * 119.61582 * 180.25329 * 22 21 20 34 34 H 1.09002 * 113.46896 * 141.67942 * 24 12 11 35 35 H 1.08998 * 113.47003 * 272.12010 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3979 2.6809 0.5915 6 1 3.4899 1.4729 0.8031 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2015 0.1660 9 6 1.2687 -2.4890 -0.2298 10 8 0.4644 -2.4793 -1.4108 11 6 2.1383 -3.7438 -0.0708 12 7 1.0010 -4.3828 0.6082 13 6 0.5575 -5.6438 0.7808 14 8 1.1698 -6.5731 0.2989 15 6 -0.6996 -5.8988 1.5717 16 1 -1.5190 -5.3171 1.1493 17 8 -1.0241 -7.2893 1.5153 18 6 -0.4819 -5.4916 3.0063 19 6 -1.3447 -4.5887 3.5987 20 6 -1.1387 -4.2249 4.9204 21 6 -0.0618 -4.7777 5.5969 22 6 0.7583 -5.6745 4.9390 23 7 0.5293 -6.0012 3.6819 24 6 0.5568 -3.0398 1.0104 25 1 -0.4849 0.8401 -0.0004 26 1 -0.0356 -1.6617 -1.5395 27 1 3.0021 -3.5942 0.5768 28 1 2.3989 -4.2154 -1.0184 29 1 -0.3382 -7.8682 1.8752 30 1 -2.1716 -4.1753 3.0401 31 1 -1.7988 -3.5245 5.4103 32 1 0.1310 -4.5141 6.6263 33 1 1.5967 -6.1126 5.4601 34 1 -0.5254 -2.9132 0.9800 35 1 0.9951 -2.7006 1.9490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358149315.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:08 Heat of formation + Delta-G solvation = -54.800278 kcal Electronic energy + Delta-G solvation = -21931.929875 eV Core-core repulsion = 18510.676209 eV Total energy + Delta-G solvation = -3421.253666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57369 -39.40991 -37.83541 -35.88388 -34.08138 -32.51249 -32.34462 -31.92227 -29.13747 -26.97783 -25.18240 -24.97816 -23.59929 -22.51776 -20.32904 -18.66659 -17.66800 -17.55926 -16.71669 -16.53912 -15.90726 -15.72079 -15.15094 -14.66849 -14.45991 -14.32227 -13.96832 -13.61790 -13.16353 -13.04547 -12.83480 -12.59781 -12.18999 -12.00956 -11.80726 -11.66446 -11.10198 -10.97554 -10.86875 -10.55019 -10.32063 -9.95135 -9.73237 -9.38834 -9.19016 -9.01219 -8.84346 -8.38517 -7.88293 -6.44365 -4.53167 0.98963 1.23616 3.07125 3.12582 3.20447 3.22512 3.47186 3.70023 4.13192 4.15741 4.57733 4.62499 4.77433 4.79258 4.95686 5.01272 5.12923 5.42328 5.46660 5.48219 5.65801 5.88275 6.03837 6.09890 6.17485 6.36795 6.50079 6.58724 6.59308 6.67352 7.03844 7.57039 7.57856 7.74531 7.90061 8.46339 8.50740 8.69592 9.17660 9.21577 10.61919 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.005963 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.236920 B = 4694.159364 C = 5522.901752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.565 6.565 11 C 0.109 3.891 12 N -0.631 5.631 13 C 0.521 3.479 14 O -0.550 6.550 15 C 0.153 3.847 16 H 0.134 0.866 17 O -0.531 6.531 18 C 0.102 3.898 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.170 4.170 22 C 0.101 3.899 23 N -0.471 5.471 24 C 0.084 3.916 25 H 0.271 0.729 26 H 0.387 0.613 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.387 0.613 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.065 0.935 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -4.346 10.405 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.374 6.374 11 C -0.013 4.013 12 N -0.365 5.365 13 C 0.309 3.691 14 O -0.429 6.429 15 C 0.089 3.911 16 H 0.151 0.849 17 O -0.335 6.335 18 C -0.036 4.036 19 C -0.166 4.166 20 C -0.098 4.098 21 C -0.190 4.190 22 C -0.057 4.057 23 N -0.181 5.181 24 C -0.039 4.039 25 H 0.081 0.919 26 H 0.238 0.762 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.237 0.763 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.891 -5.924 9.419 11.496 hybrid contribution 0.107 2.033 1.014 2.274 sum -2.784 -3.891 10.432 11.477 Atomic orbital electron populations 1.69758 1.06017 1.28114 1.48829 1.25067 0.95026 0.99781 0.93115 0.86423 0.79812 0.82051 0.78721 1.20070 1.21042 1.19649 1.21345 0.95306 0.90104 1.51053 0.90975 1.19476 0.87289 0.91290 0.82177 1.86095 1.63511 1.44291 1.43508 1.23299 0.90442 0.91448 0.96147 1.49744 1.28694 1.04906 1.53178 1.20401 0.86502 0.81379 0.80834 1.90642 1.58847 1.42201 1.51235 1.20558 0.97023 0.84913 0.88601 0.84868 1.86535 1.46840 1.14279 1.85857 1.21525 0.91472 0.94446 0.96193 1.21978 1.00621 0.98102 0.95949 1.21588 0.96702 0.97470 0.94064 1.22168 0.96442 0.98785 1.01584 1.22725 0.98236 0.94628 0.90098 1.67406 1.17526 1.24625 1.08551 1.24019 1.00575 0.77510 1.01775 0.91868 0.76231 0.89736 0.91517 0.76347 0.84277 0.84472 0.84690 0.82658 0.91686 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.75 11.81 55.43 0.65 -21.09 16 2 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 3 Si 0.90 19.03 29.55 -169.99 -5.02 14.00 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -13.28 8.65 -34.44 -0.30 -13.58 16 8 H 0.07 1.75 7.84 -52.48 -0.41 1.34 16 9 C 0.24 5.65 1.40 -91.39 -0.13 5.52 16 10 O -0.57 -14.04 13.56 -35.23 -0.48 -14.52 16 11 C 0.11 2.42 8.03 -8.52 -0.07 2.35 16 12 N -0.63 -13.60 3.66 -185.43 -0.68 -14.28 16 13 C 0.52 11.05 7.20 -10.99 -0.08 10.98 16 14 O -0.55 -13.22 17.10 -14.30 -0.24 -13.47 16 15 C 0.15 2.64 3.55 -29.04 -0.10 2.53 16 16 H 0.13 2.10 7.87 -51.93 -0.41 1.70 16 17 O -0.53 -8.99 12.98 -55.09 -0.72 -9.71 16 18 C 0.10 1.59 5.43 -82.59 -0.45 1.15 16 19 C -0.15 -1.93 9.71 -39.44 -0.38 -2.32 16 20 C -0.07 -0.80 10.18 -39.28 -0.40 -1.20 16 21 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 22 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 23 N -0.47 -7.44 9.99 -9.47 -0.09 -7.54 16 24 C 0.08 1.80 7.53 -8.66 -0.07 1.74 16 25 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 26 H 0.39 9.51 7.09 45.56 0.32 9.84 16 27 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 28 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.39 6.03 8.77 45.56 0.40 6.43 16 30 H 0.14 1.59 7.95 -52.48 -0.42 1.17 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -29.91 312.65 -7.13 -37.05 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -2.60 Total: 17.13 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.66 Total: 7.72 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.12 Total: -42.91 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.44 Total: -37.70 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.91 -7.13 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358149315.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.754 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds