Wall clock time and date at job start Tue Mar 31 2020 00:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00445 * 2 1 4 4 H 1.48500 * 109.47110 * 264.99199 * 3 2 1 5 5 H 1.48499 * 109.47256 * 24.99339 * 3 2 1 6 6 H 1.48500 * 109.47359 * 144.99439 * 3 2 1 7 7 C 1.37879 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00148 * 190.18872 * 7 2 1 9 9 C 1.50705 * 120.00207 * 10.18883 * 7 2 1 10 10 O 1.42896 * 113.27808 * 52.41133 * 9 7 2 11 11 C 1.53492 * 114.20620 * 185.47826 * 9 7 2 12 12 N 1.47061 * 87.98615 * 139.65595 * 11 9 7 13 13 C 1.34781 * 136.06121 * 152.84235 * 12 11 9 14 14 O 1.21278 * 119.99640 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00139 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47594 * 54.99948 * 15 13 12 17 17 O 1.42901 * 109.47236 * 175.00029 * 15 13 12 18 18 C 1.50700 * 109.47328 * 294.99947 * 15 13 12 19 19 C 1.38228 * 119.62116 * 125.01961 * 18 15 13 20 20 C 1.38627 * 119.16239 * 179.74579 * 19 18 15 21 21 C 1.38671 * 118.41935 * 0.47849 * 20 19 18 22 22 C 1.38189 * 119.16273 * 359.50135 * 21 20 19 23 23 N 1.31855 * 119.61439 * 305.00297 * 18 15 13 24 24 C 1.47063 * 87.88462 * 333.09954 * 12 11 9 25 25 H 0.97001 * 119.99448 * 0.02562 * 1 2 3 26 26 H 0.96697 * 114.00628 * 317.07843 * 10 9 7 27 27 H 1.08998 * 113.47116 * 24.87532 * 11 9 7 28 28 H 1.09004 * 113.52156 * 254.44650 * 11 9 7 29 29 H 0.96698 * 114.00120 * 60.00130 * 17 15 13 30 30 H 1.08008 * 120.41542 * 0.02562 * 19 18 15 31 31 H 1.07994 * 120.79042 * 180.23317 * 20 19 18 32 32 H 1.08000 * 120.42227 * 179.77579 * 21 20 19 33 33 H 1.08000 * 119.61582 * 180.25329 * 22 21 20 34 34 H 1.09002 * 113.46896 * 141.67942 * 24 12 11 35 35 H 1.08998 * 113.47003 * 272.12010 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3979 2.6809 0.5915 6 1 3.4899 1.4729 0.8031 7 6 2.0044 -1.1941 0.0005 8 1 3.0717 -1.2015 0.1660 9 6 1.2687 -2.4890 -0.2298 10 8 0.4644 -2.4793 -1.4108 11 6 2.1383 -3.7438 -0.0708 12 7 1.0010 -4.3828 0.6082 13 6 0.5575 -5.6438 0.7808 14 8 1.1698 -6.5731 0.2989 15 6 -0.6996 -5.8988 1.5717 16 1 -1.5190 -5.3171 1.1493 17 8 -1.0241 -7.2893 1.5153 18 6 -0.4819 -5.4916 3.0063 19 6 -1.3447 -4.5887 3.5987 20 6 -1.1387 -4.2249 4.9204 21 6 -0.0618 -4.7777 5.5969 22 6 0.7583 -5.6745 4.9390 23 7 0.5293 -6.0012 3.6819 24 6 0.5568 -3.0398 1.0104 25 1 -0.4849 0.8401 -0.0004 26 1 -0.0356 -1.6617 -1.5395 27 1 3.0021 -3.5942 0.5768 28 1 2.3989 -4.2154 -1.0184 29 1 -0.3382 -7.8682 1.8752 30 1 -2.1716 -4.1753 3.0401 31 1 -1.7988 -3.5245 5.4103 32 1 0.1310 -4.5141 6.6263 33 1 1.5967 -6.1126 5.4601 34 1 -0.5254 -2.9132 0.9800 35 1 0.9951 -2.7006 1.9490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358149315.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:07 Heat of formation + Delta-G solvation = -78.143351 kcal Electronic energy + Delta-G solvation = -21932.942106 eV Core-core repulsion = 18510.676209 eV Total energy + Delta-G solvation = -3422.265897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85109 -40.87077 -39.45697 -37.34792 -35.94459 -34.23231 -33.46557 -33.03057 -30.74751 -28.46669 -26.94239 -26.65009 -24.54404 -23.65715 -22.01400 -20.33119 -19.36891 -18.85388 -18.28227 -17.79981 -17.22508 -16.98346 -16.82822 -16.22992 -16.06047 -15.61246 -15.26165 -15.06260 -14.60233 -14.44613 -14.36551 -13.98628 -13.79307 -13.61473 -13.34760 -12.97708 -12.81173 -12.70474 -12.26213 -12.19759 -12.17095 -11.31775 -10.94547 -10.85029 -10.76776 -10.40226 -10.28407 -9.98520 -9.66306 -8.28211 -6.43324 0.02474 0.32651 1.45145 1.46398 1.51116 1.57876 1.83637 2.40664 2.69279 2.92900 3.04797 3.27357 3.31896 3.61892 3.75026 4.00947 4.07890 4.12911 4.19111 4.29662 4.42075 4.55462 4.56460 4.73736 4.77497 4.84422 4.90106 5.15501 5.19716 5.22463 5.69964 5.71500 5.87771 6.27583 6.60875 6.77643 6.92244 7.00716 7.28798 7.29878 8.77674 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.005963 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.236920 B = 4694.159364 C = 5522.901752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.224 3.776 10 O -0.576 6.576 11 C 0.106 3.894 12 N -0.631 5.631 13 C 0.515 3.485 14 O -0.586 6.586 15 C 0.160 3.840 16 H 0.146 0.854 17 O -0.535 6.535 18 C 0.077 3.923 19 C -0.154 4.154 20 C -0.072 4.072 21 C -0.156 4.156 22 C 0.085 3.915 23 N -0.507 5.507 24 C 0.105 3.895 25 H 0.275 0.725 26 H 0.385 0.615 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.391 0.609 30 H 0.152 0.848 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.067 0.933 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -3.099 12.492 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.599 4.599 8 H 0.088 0.912 9 C 0.183 3.817 10 O -0.385 6.385 11 C -0.017 4.017 12 N -0.365 5.365 13 C 0.304 3.696 14 O -0.468 6.468 15 C 0.097 3.903 16 H 0.163 0.837 17 O -0.340 6.340 18 C -0.061 4.061 19 C -0.174 4.174 20 C -0.098 4.098 21 C -0.176 4.176 22 C -0.072 4.072 23 N -0.217 5.217 24 C -0.017 4.017 25 H 0.085 0.915 26 H 0.236 0.764 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.241 0.759 30 H 0.170 0.830 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.195 0.805 34 H 0.086 0.914 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.344 -4.680 11.513 12.870 hybrid contribution 0.260 1.626 0.413 1.697 sum -3.083 -3.054 11.926 12.691 Atomic orbital electron populations 1.69808 1.06779 1.28926 1.48562 1.25657 0.95759 1.02159 0.92609 0.85517 0.78721 0.78706 0.78376 1.20316 1.20521 1.19484 1.21502 0.95384 0.90935 1.52064 0.91241 1.19666 0.87873 0.91624 0.82551 1.86085 1.63749 1.44227 1.44470 1.23322 0.91128 0.91116 0.96137 1.49788 1.28419 1.05276 1.53023 1.21247 0.87425 0.80570 0.80312 1.90607 1.60385 1.43064 1.52754 1.20546 0.94953 0.85058 0.89784 0.83686 1.86504 1.46954 1.14536 1.86028 1.21250 0.93089 0.96456 0.95283 1.22194 1.00528 0.97473 0.97209 1.22037 0.97138 0.97448 0.93185 1.22601 0.95074 0.96862 1.03022 1.23231 0.99393 0.95287 0.89332 1.67313 1.18257 1.25871 1.10294 1.23728 1.00367 0.76976 1.00668 0.91527 0.76432 0.88527 0.92669 0.75913 0.83041 0.81193 0.80941 0.80514 0.91426 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.27 11.81 21.45 0.25 -43.02 16 2 C 0.04 1.93 5.21 84.66 0.44 2.37 16 3 Si 0.96 38.12 29.55 68.60 2.03 40.14 16 4 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.56 -27.39 8.65 25.60 0.22 -27.16 16 8 H 0.07 3.35 7.84 -2.91 -0.02 3.32 16 9 C 0.22 10.60 1.40 -11.29 -0.02 10.58 16 10 O -0.58 -28.91 13.56 -148.98 -2.02 -30.93 16 11 C 0.11 4.75 8.03 83.17 0.67 5.42 16 12 N -0.63 -27.39 3.66 -859.44 -3.15 -30.54 16 13 C 0.51 22.12 7.20 87.65 0.63 22.75 16 14 O -0.59 -28.89 17.10 15.97 0.27 -28.62 16 15 C 0.16 5.52 3.55 29.10 0.10 5.62 16 16 H 0.15 4.54 7.87 -2.39 -0.02 4.52 16 17 O -0.54 -18.28 12.98 -129.99 -1.69 -19.97 16 18 C 0.08 2.33 5.43 42.55 0.23 2.56 16 19 C -0.15 -3.76 9.71 22.36 0.22 -3.54 16 20 C -0.07 -1.36 10.18 22.47 0.23 -1.13 16 21 C -0.16 -2.75 10.11 22.36 0.23 -2.53 16 22 C 0.08 1.95 11.18 84.67 0.95 2.89 16 23 N -0.51 -15.62 9.99 -183.88 -1.84 -17.46 16 24 C 0.11 4.47 7.53 83.08 0.63 5.09 16 25 H 0.28 12.50 8.31 -92.71 -0.77 11.72 16 26 H 0.38 19.09 7.09 -74.06 -0.53 18.57 16 27 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 28 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.39 12.49 8.77 -74.06 -0.65 11.84 16 30 H 0.15 3.16 7.95 -2.91 -0.02 3.14 16 31 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.08 3.30 8.10 -2.39 -0.02 3.28 16 Total: -1.00 -63.69 312.65 -1.65 -65.34 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.04 Total: 42.11 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 4.52 Total: 22.94 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -4.73 Total: -91.02 kcal Atomic # 8 Polarization: -76.08 SS G_CDS: -3.43 Total: -79.51 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.14 kcal Total: -63.69 -1.65 -65.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358149315.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.801 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds