Wall clock time and date at job start Tue Mar 31 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47082 * 269.99931 * 3 2 1 5 5 H 1.48501 * 109.47042 * 29.99654 * 3 2 1 6 6 H 1.48499 * 109.47243 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00222 * 0.02562 * 7 2 1 10 10 O 1.42900 * 113.28270 * 313.06463 * 9 7 2 11 11 C 1.53495 * 114.20764 * 179.97438 * 9 7 2 12 12 N 1.47063 * 87.98832 * 220.14528 * 11 9 7 13 13 C 1.34776 * 136.06279 * 207.08253 * 12 11 9 14 14 O 1.21283 * 119.99844 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00343 * 179.97438 * 13 12 11 16 16 H 1.08992 * 109.47518 * 305.00716 * 15 13 12 17 17 O 1.42893 * 109.47119 * 184.99765 * 15 13 12 18 18 C 1.50707 * 109.46627 * 65.00647 * 15 13 12 19 19 C 1.38223 * 119.61967 * 125.00243 * 18 15 13 20 20 C 1.38625 * 119.15978 * 180.27814 * 19 18 15 21 21 C 1.38677 * 118.42126 * 359.46985 * 20 19 18 22 22 C 1.38182 * 119.16110 * 0.48634 * 21 20 19 23 23 N 1.31856 * 119.61465 * 304.97315 * 18 15 13 24 24 C 1.47067 * 87.88222 * 27.34438 * 12 11 9 25 25 H 0.96995 * 119.99941 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00012 * 46.93204 * 10 9 7 27 27 H 1.09003 * 113.46558 * 105.36614 * 11 9 7 28 28 H 1.08998 * 113.52224 * 334.94084 * 11 9 7 29 29 H 0.96696 * 114.00690 * 300.00868 * 17 15 13 30 30 H 1.08002 * 120.41617 * 359.97438 * 19 18 15 31 31 H 1.08003 * 120.79223 * 179.72202 * 20 19 18 32 32 H 1.08006 * 120.41702 * 180.22168 * 21 20 19 33 33 H 1.07998 * 119.61686 * 179.76233 * 22 21 20 34 34 H 1.08995 * 113.47094 * 87.43509 * 24 12 11 35 35 H 1.09004 * 113.46869 * 217.87735 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.1921 -2.5400 0.9591 11 6 2.1488 -3.7442 0.0005 12 7 1.2074 -4.3594 -0.9470 13 6 0.8320 -5.6140 -1.2658 14 8 1.3282 -6.5598 -0.6913 15 6 -0.2052 -5.8415 -2.3352 16 1 -1.1072 -5.2802 -2.0918 17 8 -0.5160 -7.2343 -2.4086 18 6 0.3329 -5.3762 -3.6638 19 6 0.3544 -6.2488 -4.7355 20 6 0.8568 -5.8126 -5.9517 21 6 1.3106 -4.5057 -6.0479 22 6 1.2568 -3.6906 -4.9334 23 7 0.7773 -4.1413 -3.7905 24 6 0.8606 -3.0034 -1.3985 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3716 -1.7542 0.9562 27 1 2.1878 -4.2512 0.9647 28 1 3.1376 -3.5675 -0.4228 29 1 0.2418 -7.7957 -2.6219 30 1 -0.0111 -7.2591 -4.6255 31 1 0.8901 -6.4736 -6.8052 32 1 1.7051 -4.1311 -6.9809 33 1 1.6118 -2.6727 -4.9990 34 1 1.5094 -2.6305 -2.1910 35 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358149317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:10 Heat of formation + Delta-G solvation = -47.092295 kcal Electronic energy + Delta-G solvation = -22015.331852 eV Core-core repulsion = 18594.412429 eV Total energy + Delta-G solvation = -3420.919422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62459 -39.28507 -37.84957 -36.03255 -33.96723 -32.68610 -32.12768 -31.56691 -29.12926 -27.02083 -25.02325 -24.90872 -23.49771 -22.47416 -20.27768 -18.63626 -17.75322 -17.49343 -16.64944 -16.50715 -15.93770 -15.56055 -15.11755 -14.86247 -14.45221 -14.16537 -13.94945 -13.51039 -13.25864 -12.91232 -12.72877 -12.56432 -12.05365 -11.88986 -11.61181 -11.48897 -11.06737 -10.97807 -10.90889 -10.44894 -10.18380 -9.96739 -9.66304 -9.46617 -9.17851 -8.86232 -8.68110 -8.25873 -7.71766 -6.34923 -4.44221 0.98894 1.22362 3.05726 3.16060 3.24425 3.27707 3.49577 3.79471 4.08410 4.21569 4.36246 4.68293 4.79584 4.86791 5.00704 5.04152 5.12902 5.40157 5.52373 5.66750 5.68068 6.01257 6.06846 6.07782 6.26125 6.48218 6.58350 6.72875 6.80451 6.90841 7.23007 7.41776 7.68532 7.87883 7.96669 8.53723 8.58678 8.74694 9.26142 9.56216 10.71892 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.005943 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.867459 B = 4710.402405 C = 5644.818941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.230 3.770 10 O -0.573 6.573 11 C 0.106 3.894 12 N -0.615 5.615 13 C 0.515 3.485 14 O -0.564 6.564 15 C 0.149 3.851 16 H 0.140 0.860 17 O -0.530 6.530 18 C 0.098 3.902 19 C -0.163 4.163 20 C -0.076 4.076 21 C -0.176 4.176 22 C 0.107 3.893 23 N -0.456 5.456 24 C 0.106 3.894 25 H 0.273 0.727 26 H 0.393 0.607 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.382 0.618 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -6.197 -12.436 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.089 0.911 9 C 0.188 3.812 10 O -0.386 6.386 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.302 3.698 14 O -0.445 6.445 15 C 0.085 3.915 16 H 0.157 0.843 17 O -0.334 6.334 18 C -0.040 4.040 19 C -0.183 4.183 20 C -0.102 4.102 21 C -0.195 4.195 22 C -0.050 4.050 23 N -0.165 5.165 24 C -0.017 4.017 25 H 0.083 0.917 26 H 0.250 0.750 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.231 0.769 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.106 0.894 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.295 -6.597 -11.176 12.981 hybrid contribution 0.725 0.726 -1.279 1.640 sum 1.020 -5.871 -12.455 13.807 Atomic orbital electron populations 1.69268 1.06161 1.28048 1.50374 1.25055 0.94987 0.99776 0.93192 0.86343 0.79820 0.82084 0.78307 1.20359 1.20944 1.19591 1.21404 0.93792 0.89810 1.51778 0.91126 1.19749 0.85496 0.90798 0.85159 1.86034 1.45179 1.48355 1.59055 1.23334 0.93752 0.92455 0.92075 1.49660 1.41238 1.05027 1.38813 1.20300 0.83689 0.81859 0.83944 1.90649 1.57940 1.41082 1.54870 1.20381 0.98794 0.83594 0.88696 0.84250 1.86594 1.38541 1.15013 1.93218 1.21679 0.96125 0.90685 0.95538 1.21854 1.01319 1.01672 0.93430 1.21540 0.95343 0.95860 0.97427 1.22193 1.01811 0.95032 1.00505 1.22883 0.94374 1.00233 0.87527 1.67667 1.08555 1.14256 1.26058 1.24104 1.00478 0.76381 1.00725 0.91676 0.75024 0.91746 0.89890 0.76931 0.84188 0.84819 0.84777 0.82193 0.89394 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.84 11.01 55.43 0.61 -22.23 16 2 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 3 Si 0.91 19.38 29.54 -169.99 -5.02 14.36 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -13.33 8.70 -34.44 -0.30 -13.63 16 8 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.23 5.61 1.58 -91.13 -0.14 5.47 16 10 O -0.57 -15.10 13.55 -35.23 -0.48 -15.58 16 11 C 0.11 2.39 8.02 -8.52 -0.07 2.33 16 12 N -0.62 -13.42 3.52 -185.07 -0.65 -14.08 16 13 C 0.51 10.81 7.37 -10.99 -0.08 10.73 16 14 O -0.56 -13.26 17.10 -14.31 -0.24 -13.50 16 15 C 0.15 2.51 3.75 -29.03 -0.11 2.40 16 16 H 0.14 2.35 8.14 -51.93 -0.42 1.93 16 17 O -0.53 -7.99 11.87 -55.09 -0.65 -8.65 16 18 C 0.10 1.49 6.16 -82.58 -0.51 0.98 16 19 C -0.16 -1.95 9.24 -39.44 -0.36 -2.31 16 20 C -0.08 -0.76 10.18 -39.28 -0.40 -1.16 16 21 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 22 C 0.11 1.39 11.18 -17.55 -0.20 1.19 16 23 N -0.46 -7.29 6.53 -9.47 -0.06 -7.35 16 24 C 0.11 2.32 5.62 -8.38 -0.05 2.28 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.39 10.43 6.32 45.56 0.29 10.72 16 27 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 29 H 0.38 4.75 8.04 45.56 0.37 5.11 16 30 H 0.14 1.39 6.73 -52.49 -0.35 1.03 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 1.88 7.20 -51.93 -0.37 1.51 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -30.42 302.86 -7.22 -37.64 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -2.57 Total: 17.04 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.71 Total: 7.77 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.10 Total: -43.66 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.38 Total: -37.72 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.42 -7.22 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358149317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.451 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds