Wall clock time and date at job start Tue Mar 31 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47082 * 269.99931 * 3 2 1 5 5 H 1.48501 * 109.47042 * 29.99654 * 3 2 1 6 6 H 1.48499 * 109.47243 * 150.00012 * 3 2 1 7 7 C 1.37880 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00222 * 0.02562 * 7 2 1 10 10 O 1.42900 * 113.28270 * 313.06463 * 9 7 2 11 11 C 1.53495 * 114.20764 * 179.97438 * 9 7 2 12 12 N 1.47063 * 87.98832 * 220.14528 * 11 9 7 13 13 C 1.34776 * 136.06279 * 207.08253 * 12 11 9 14 14 O 1.21283 * 119.99844 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00343 * 179.97438 * 13 12 11 16 16 H 1.08992 * 109.47518 * 305.00716 * 15 13 12 17 17 O 1.42893 * 109.47119 * 184.99765 * 15 13 12 18 18 C 1.50707 * 109.46627 * 65.00647 * 15 13 12 19 19 C 1.38223 * 119.61967 * 125.00243 * 18 15 13 20 20 C 1.38625 * 119.15978 * 180.27814 * 19 18 15 21 21 C 1.38677 * 118.42126 * 359.46985 * 20 19 18 22 22 C 1.38182 * 119.16110 * 0.48634 * 21 20 19 23 23 N 1.31856 * 119.61465 * 304.97315 * 18 15 13 24 24 C 1.47067 * 87.88222 * 27.34438 * 12 11 9 25 25 H 0.96995 * 119.99941 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00012 * 46.93204 * 10 9 7 27 27 H 1.09003 * 113.46558 * 105.36614 * 11 9 7 28 28 H 1.08998 * 113.52224 * 334.94084 * 11 9 7 29 29 H 0.96696 * 114.00690 * 300.00868 * 17 15 13 30 30 H 1.08002 * 120.41617 * 359.97438 * 19 18 15 31 31 H 1.08003 * 120.79223 * 179.72202 * 20 19 18 32 32 H 1.08006 * 120.41702 * 180.22168 * 21 20 19 33 33 H 1.07998 * 119.61686 * 179.76233 * 22 21 20 34 34 H 1.08995 * 113.47094 * 87.43509 * 24 12 11 35 35 H 1.09004 * 113.46869 * 217.87735 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.1921 -2.5400 0.9591 11 6 2.1488 -3.7442 0.0005 12 7 1.2074 -4.3594 -0.9470 13 6 0.8320 -5.6140 -1.2658 14 8 1.3282 -6.5598 -0.6913 15 6 -0.2052 -5.8415 -2.3352 16 1 -1.1072 -5.2802 -2.0918 17 8 -0.5160 -7.2343 -2.4086 18 6 0.3329 -5.3762 -3.6638 19 6 0.3544 -6.2488 -4.7355 20 6 0.8568 -5.8126 -5.9517 21 6 1.3106 -4.5057 -6.0479 22 6 1.2568 -3.6906 -4.9334 23 7 0.7773 -4.1413 -3.7905 24 6 0.8606 -3.0034 -1.3985 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3716 -1.7542 0.9562 27 1 2.1878 -4.2512 0.9647 28 1 3.1376 -3.5675 -0.4228 29 1 0.2418 -7.7957 -2.6219 30 1 -0.0111 -7.2591 -4.6255 31 1 0.8901 -6.4736 -6.8052 32 1 1.7051 -4.1311 -6.9809 33 1 1.6118 -2.6727 -4.9990 34 1 1.5094 -2.6305 -2.1910 35 1 -0.1981 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358149317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:10 Heat of formation + Delta-G solvation = -70.192785 kcal Electronic energy + Delta-G solvation = -22016.333564 eV Core-core repulsion = 18594.412429 eV Total energy + Delta-G solvation = -3421.921135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86872 -40.76254 -39.45781 -37.45551 -35.88418 -34.10029 -33.64284 -32.60305 -30.73652 -28.52987 -26.81579 -26.62736 -24.42066 -23.57535 -21.99565 -20.27911 -19.38188 -18.87099 -18.30519 -17.73297 -17.13567 -17.01909 -16.58568 -16.40269 -15.97093 -15.56643 -15.43249 -14.79519 -14.59774 -14.44681 -14.29946 -13.96186 -13.66470 -13.35852 -13.33857 -12.76460 -12.72246 -12.66641 -12.29093 -12.21044 -12.12364 -11.33919 -11.04523 -10.81515 -10.66092 -10.35010 -10.10848 -9.93441 -9.51765 -8.24324 -6.40974 0.05073 0.36029 1.44385 1.48081 1.51355 1.60943 1.91773 2.42549 2.78033 2.92531 2.98218 3.19851 3.44594 3.78438 3.82524 3.98904 4.11842 4.21313 4.24325 4.35154 4.46566 4.58590 4.61960 4.81891 4.93950 4.97101 5.06594 5.16551 5.24266 5.33611 5.75063 5.76133 5.94255 6.31638 6.63736 6.83546 6.97331 7.07332 7.32105 7.51062 8.82293 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.005943 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.867459 B = 4710.402405 C = 5644.818941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.032 3.968 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.208 3.792 10 O -0.588 6.588 11 C 0.105 3.895 12 N -0.618 5.618 13 C 0.507 3.493 14 O -0.594 6.594 15 C 0.162 3.838 16 H 0.132 0.868 17 O -0.528 6.528 18 C 0.069 3.931 19 C -0.159 4.159 20 C -0.071 4.071 21 C -0.159 4.159 22 C 0.085 3.915 23 N -0.496 5.496 24 C 0.133 3.867 25 H 0.276 0.724 26 H 0.389 0.611 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.394 0.606 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.094 0.906 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -6.218 -15.007 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.091 0.909 9 C 0.167 3.833 10 O -0.402 6.402 11 C -0.017 4.017 12 N -0.350 5.350 13 C 0.297 3.703 14 O -0.478 6.478 15 C 0.098 3.902 16 H 0.150 0.850 17 O -0.333 6.333 18 C -0.069 4.069 19 C -0.178 4.178 20 C -0.096 4.096 21 C -0.178 4.178 22 C -0.073 4.073 23 N -0.206 5.206 24 C 0.011 3.989 25 H 0.086 0.914 26 H 0.245 0.755 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.245 0.755 30 H 0.177 0.823 31 H 0.191 0.809 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.112 0.888 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.981 -6.638 -13.761 15.310 hybrid contribution 0.520 0.681 -0.524 1.004 sum 1.501 -5.958 -14.286 15.551 Atomic orbital electron populations 1.69337 1.07255 1.28887 1.50452 1.25775 0.95733 1.02685 0.92616 0.85347 0.78412 0.78074 0.78534 1.19435 1.20937 1.19486 1.21608 0.94039 0.90474 1.52570 0.90883 1.20061 0.85565 0.91580 0.86094 1.86015 1.45772 1.48230 1.60136 1.23326 0.94528 0.91798 0.92064 1.49701 1.41176 1.05466 1.38624 1.21186 0.83963 0.80930 0.84241 1.90614 1.59312 1.41693 1.56162 1.20128 0.96905 0.84410 0.88729 0.85033 1.86570 1.39170 1.14395 1.93202 1.21424 0.98587 0.91523 0.95375 1.22092 1.00592 1.01905 0.93241 1.22027 0.93627 0.96277 0.97692 1.22582 0.99773 0.94708 1.00779 1.23206 0.94958 1.01325 0.87783 1.67476 1.09909 1.15082 1.28131 1.23736 0.99659 0.76242 0.99297 0.91408 0.75513 0.93022 0.88223 0.75535 0.82328 0.80857 0.81195 0.81321 0.88769 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.05 11.01 21.45 0.24 -46.81 16 2 C 0.03 1.59 5.39 84.66 0.46 2.05 16 3 Si 0.97 39.33 29.54 68.60 2.03 41.35 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -27.79 8.70 25.60 0.22 -27.57 16 8 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 10.39 1.58 -11.12 -0.02 10.37 16 10 O -0.59 -32.00 13.55 -148.98 -2.02 -34.02 16 11 C 0.11 4.86 8.02 83.17 0.67 5.53 16 12 N -0.62 -27.53 3.52 -858.31 -3.02 -30.55 16 13 C 0.51 21.68 7.37 87.66 0.65 22.33 16 14 O -0.59 -28.38 17.10 15.95 0.27 -28.10 16 15 C 0.16 5.49 3.75 29.10 0.11 5.60 16 16 H 0.13 4.57 8.14 -2.39 -0.02 4.56 16 17 O -0.53 -15.55 11.87 -129.99 -1.54 -17.09 16 18 C 0.07 2.03 6.16 42.55 0.26 2.29 16 19 C -0.16 -3.39 9.24 22.36 0.21 -3.19 16 20 C -0.07 -1.13 10.18 22.47 0.23 -0.90 16 21 C -0.16 -2.69 10.11 22.36 0.23 -2.46 16 22 C 0.08 2.05 11.18 84.67 0.95 2.99 16 23 N -0.50 -15.61 6.53 -183.88 -1.20 -16.81 16 24 C 0.13 5.98 5.62 83.26 0.47 6.44 16 25 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 26 H 0.39 21.33 6.32 -74.06 -0.47 20.86 16 27 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 4.19 8.10 -2.39 -0.02 4.17 16 29 H 0.39 9.37 8.04 -74.06 -0.60 8.77 16 30 H 0.16 2.67 6.73 -2.91 -0.02 2.65 16 31 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 34 H 0.09 4.09 7.20 -2.39 -0.02 4.07 16 35 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -66.11 302.86 -0.75 -66.85 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: 0.08 Total: 41.70 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 4.42 Total: 23.48 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.99 Total: -94.18 kcal Atomic # 8 Polarization: -75.93 SS G_CDS: -3.29 Total: -79.22 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.35 kcal Total: -66.11 -0.75 -66.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358149317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.340 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds