Wall clock time and date at job start Tue Mar 31 2020 00:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99967 * 2 1 4 4 H 1.48494 * 109.47247 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47045 * 119.99978 * 3 2 1 6 6 H 1.48498 * 109.47139 * 239.99689 * 3 2 1 7 7 C 1.37874 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00254 * 0.02562 * 7 2 1 10 10 O 1.42896 * 112.94234 * 50.32887 * 9 7 2 11 11 C 1.53945 * 113.73870 * 278.73913 * 9 7 2 12 12 N 1.47812 * 86.03459 * 222.08522 * 11 9 7 13 13 C 1.34777 * 134.45426 * 204.64588 * 12 11 9 14 14 O 1.21551 * 120.00039 * 174.34167 * 13 12 11 15 15 C 1.47845 * 120.00229 * 354.34634 * 13 12 11 16 16 C 1.40029 * 120.55680 * 353.29422 * 15 13 12 17 17 C 1.38353 * 118.28886 * 179.97438 * 16 15 13 18 18 C 1.38358 * 119.30208 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.45918 * 179.97438 * 18 17 16 20 20 O 1.42905 * 109.47139 * 0.02562 * 19 18 17 21 21 N 1.31925 * 121.07820 * 359.97438 * 18 17 16 22 22 C 1.31696 * 121.88181 * 359.77055 * 21 18 17 23 23 C 1.47576 * 91.05144 * 24.55055 * 12 11 9 24 24 H 0.96996 * 120.00013 * 0.02562 * 1 2 3 25 25 H 0.96697 * 114.00259 * 309.66584 * 10 9 7 26 26 H 1.09001 * 113.77050 * 336.34518 * 11 9 7 27 27 H 1.08995 * 113.77191 * 107.74455 * 11 9 7 28 28 H 1.07999 * 120.85305 * 0.02562 * 16 15 13 29 29 H 1.07992 * 120.34984 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.46899 * 119.99839 * 19 18 17 31 31 H 1.09000 * 109.47452 * 240.00048 * 19 18 17 32 32 H 0.96698 * 113.99775 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.71824 * 180.24241 * 22 21 18 34 34 H 1.09007 * 113.76642 * 221.15082 * 23 12 11 35 35 H 1.09000 * 113.87211 * 89.76877 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.2454 -2.5618 -1.0127 11 6 0.7552 -2.9285 1.3933 12 7 1.1913 -4.2895 1.0160 13 6 0.8418 -5.5332 1.4002 14 8 1.3113 -6.4995 0.8316 15 6 -0.1128 -5.7222 2.5133 16 6 -0.5533 -4.6274 3.2670 17 6 -1.4471 -4.8579 4.2976 18 6 -1.8728 -6.1502 4.5484 19 6 -2.8459 -6.4054 5.6704 20 8 -3.1694 -5.1695 6.3107 21 7 -1.4406 -7.1627 3.8214 22 6 -0.5937 -6.9937 2.8271 23 6 2.1608 -3.7401 0.0485 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3467 -1.7974 -1.0270 26 1 1.3259 -2.4965 2.2153 27 1 -0.3225 -2.8320 1.5250 28 1 -0.2048 -3.6287 3.0490 29 1 -1.8082 -4.0378 4.9004 30 1 -3.7542 -6.8545 5.2685 31 1 -2.3953 -7.0835 6.3951 32 1 -3.7931 -5.2581 7.0444 33 1 -0.2658 -7.8471 2.2522 34 1 2.2033 -4.2903 -0.8915 35 1 3.1460 -3.5464 0.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447922542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:16 Heat of formation + Delta-G solvation = -52.430112 kcal Electronic energy + Delta-G solvation = -21267.368980 eV Core-core repulsion = 17846.218093 eV Total energy + Delta-G solvation = -3421.150887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54343 -39.25690 -37.42820 -36.85313 -34.10032 -32.72924 -32.27281 -31.63462 -28.83130 -27.01440 -25.65665 -25.32418 -23.27442 -22.52961 -20.24305 -18.90105 -17.79085 -17.53256 -16.67465 -16.47580 -15.99862 -15.47448 -15.27627 -14.99540 -14.73660 -14.37920 -14.17051 -13.54123 -13.25591 -13.10942 -12.82913 -12.51111 -12.13714 -12.05688 -11.77019 -11.62169 -11.15076 -11.07208 -10.60844 -10.57982 -10.35902 -9.92724 -9.79736 -9.50732 -9.26895 -8.92140 -8.82013 -8.46000 -7.92664 -6.44338 -4.55170 0.74874 1.30258 3.13358 3.15754 3.19770 3.21651 3.37498 3.58128 3.98530 4.14892 4.54737 4.73777 4.80292 4.88826 4.96181 5.01503 5.18151 5.21966 5.44581 5.55168 5.82152 5.84146 6.05312 6.11563 6.17846 6.30346 6.36281 6.48736 6.55088 6.70085 7.01502 7.29296 7.57700 7.75482 7.86170 8.33495 8.48189 8.61945 9.16282 9.36672 10.62444 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.004705 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.988453 B = 5950.134297 C = 6951.718540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.069 3.931 12 N -0.625 5.625 13 C 0.574 3.426 14 O -0.557 6.557 15 C -0.172 4.172 16 C -0.053 4.053 17 C -0.155 4.155 18 C 0.128 3.872 19 C 0.130 3.870 20 O -0.568 6.568 21 N -0.489 5.489 22 C 0.156 3.844 23 C 0.113 3.887 24 H 0.274 0.726 25 H 0.392 0.608 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.387 0.613 33 H 0.170 0.830 34 H 0.073 0.927 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -5.979 10.905 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.054 4.054 12 N -0.357 5.357 13 C 0.364 3.636 14 O -0.439 6.439 15 C -0.177 4.177 16 C -0.079 4.079 17 C -0.174 4.174 18 C -0.009 4.009 19 C 0.052 3.948 20 O -0.374 6.374 21 N -0.200 5.200 22 C -0.003 4.003 23 C -0.008 4.008 24 H 0.085 0.915 25 H 0.247 0.753 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.187 0.813 34 H 0.092 0.908 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.639 -7.693 10.281 13.653 hybrid contribution -0.002 2.060 0.483 2.116 sum -4.640 -5.633 10.764 13.005 Atomic orbital electron populations 1.69387 1.06176 1.28395 1.49795 1.25064 0.95025 0.99879 0.92966 0.86385 0.79515 0.81595 0.79028 1.20980 1.19874 1.19813 1.21461 0.93946 0.89863 1.52497 0.90993 1.19830 0.85649 0.91281 0.83339 1.86074 1.47086 1.49870 1.55255 1.24534 1.00099 0.77573 1.03177 1.50104 1.39868 1.04502 1.41267 1.17641 0.81478 0.82136 0.82387 1.90712 1.57324 1.39233 1.56588 1.21108 1.01631 0.95650 0.99285 1.22559 0.92965 1.00266 0.92082 1.21889 0.98375 0.98546 0.98623 1.21042 0.95210 0.89769 0.94841 1.20565 0.96273 0.85850 0.92123 1.86415 1.68173 1.30954 1.51885 1.67300 1.12158 1.34229 1.06267 1.22841 0.89908 0.95999 0.91523 1.23498 0.93212 0.92651 0.91452 0.91548 0.75317 0.89543 0.90707 0.82666 0.83372 0.91101 0.91148 0.76472 0.81275 0.90807 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.06 11.20 55.43 0.62 -21.44 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 18.95 29.54 -169.99 -5.02 13.93 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -13.10 8.61 -34.44 -0.30 -13.40 16 8 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.24 5.60 1.40 -90.85 -0.13 5.48 16 10 O -0.57 -14.41 13.48 -35.23 -0.48 -14.89 16 11 C 0.07 1.41 5.64 -2.84 -0.02 1.40 16 12 N -0.63 -13.11 3.60 -179.24 -0.65 -13.76 16 13 C 0.57 11.98 7.99 -12.33 -0.10 11.88 16 14 O -0.56 -12.86 17.13 5.32 0.09 -12.77 16 15 C -0.17 -3.06 5.89 -104.82 -0.62 -3.68 16 16 C -0.05 -0.86 9.19 -38.87 -0.36 -1.21 16 17 C -0.15 -2.23 9.40 -39.49 -0.37 -2.60 16 18 C 0.13 1.78 6.78 -82.51 -0.56 1.22 16 19 C 0.13 1.26 7.58 36.01 0.27 1.53 16 20 O -0.57 -5.04 12.09 -35.23 -0.43 -5.47 16 21 N -0.49 -7.47 10.25 -9.14 -0.09 -7.56 16 22 C 0.16 2.56 10.77 -17.13 -0.18 2.37 16 23 C 0.11 2.42 8.23 -2.97 -0.02 2.40 16 24 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 25 H 0.39 9.94 6.60 45.56 0.30 10.24 16 26 H 0.09 1.67 8.01 -51.93 -0.42 1.26 16 27 H 0.07 1.54 6.89 -51.93 -0.36 1.18 16 28 H 0.16 2.50 4.24 -52.49 -0.22 2.28 16 29 H 0.15 1.94 6.98 -52.49 -0.37 1.57 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.39 1.38 9.12 45.56 0.42 1.80 16 33 H 0.17 2.61 7.68 -52.49 -0.40 2.21 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -29.57 303.64 -6.13 -35.70 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -2.28 Total: 14.62 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.48 Total: 7.06 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.12 Total: -42.76 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.81 Total: -33.12 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.57 -6.13 -35.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447922542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.732 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds