Wall clock time and date at job start Tue Mar 31 2020 00:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86796 * 120.00535 * 2 1 4 4 H 1.48505 * 109.47086 * 274.75753 * 3 2 1 5 5 H 1.48506 * 109.47061 * 34.75041 * 3 2 1 6 6 H 1.48494 * 109.47441 * 154.75448 * 3 2 1 7 7 C 1.40037 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 161.52796 * 7 2 1 9 9 C 1.41531 * 120.00256 * 341.53144 * 7 2 1 10 10 C 1.41179 * 120.99859 * 337.38241 * 9 7 2 11 11 C 1.37586 * 119.02125 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.10541 * 359.71966 * 11 10 9 13 13 C 1.32474 * 122.23202 * 0.57297 * 12 11 10 14 14 N 1.39464 * 119.57991 * 179.70166 * 13 12 11 15 15 C 1.34777 * 119.99897 * 4.30790 * 14 13 12 16 16 O 1.21273 * 120.00269 * 355.19903 * 15 14 13 17 17 C 1.50707 * 119.99804 * 175.20021 * 15 14 13 18 18 O 1.42902 * 110.82810 * 37.19594 * 17 15 14 19 19 C 1.54814 * 110.90267 * 160.83762 * 17 15 14 20 20 C 1.54107 * 104.18356 * 139.08031 * 19 17 15 21 21 O 1.43748 * 107.29266 * 2.02825 * 20 19 17 22 22 C 1.44375 * 106.97560 * 333.48880 * 21 20 19 23 23 C 1.38600 * 120.83791 * 359.43048 * 13 12 11 24 24 H 0.96993 * 119.99324 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.48897 * 359.95476 * 10 9 7 26 26 H 1.07994 * 119.44913 * 180.02562 * 11 10 9 27 27 H 0.97002 * 120.00124 * 184.30041 * 14 13 12 28 28 H 0.96701 * 113.99701 * 297.79657 * 18 17 15 29 29 H 1.09003 * 110.48719 * 257.75216 * 19 17 15 30 30 H 1.08994 * 110.48793 * 20.40905 * 19 17 15 31 31 H 1.08995 * 109.87798 * 242.60394 * 20 19 17 32 32 H 1.09001 * 110.00374 * 121.52195 * 20 19 17 33 33 H 1.09007 * 110.61758 * 281.55652 * 22 21 20 34 34 H 1.09002 * 110.61638 * 158.56292 * 22 21 20 35 35 H 1.08001 * 120.59907 * 180.24925 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3886 2.1044 -1.3953 5 1 1.4929 2.6216 0.7981 6 1 3.5857 1.4131 0.5971 7 6 2.0076 -1.2128 -0.0005 8 1 3.0459 -1.2367 -0.2969 9 6 1.3546 -2.4071 0.3872 10 6 0.2043 -2.3743 1.2051 11 6 -0.3985 -3.5599 1.5571 12 7 0.0782 -4.7184 1.1384 13 6 1.1571 -4.8040 0.3745 14 7 1.6161 -6.0570 -0.0308 15 6 0.9150 -7.1649 0.2815 16 8 -0.0671 -7.0819 0.9881 17 6 1.3515 -8.5069 -0.2474 18 8 2.7770 -8.6041 -0.2721 19 6 0.7337 -9.6564 0.5855 20 6 0.3303 -10.7093 -0.4649 21 8 0.7361 -10.2083 -1.7498 22 6 0.7548 -8.7679 -1.6538 23 6 1.8323 -3.6637 -0.0317 24 1 -0.4849 0.8400 0.0004 25 1 -0.1964 -1.4324 1.5496 26 1 -1.2790 -3.5428 2.1821 27 1 2.4399 -6.1312 -0.5376 28 1 3.2051 -7.9604 -0.8531 29 1 1.4717 -10.0678 1.2742 30 1 -0.1429 -9.3048 1.1295 31 1 -0.7497 -10.8547 -0.4481 32 1 0.8346 -11.6535 -0.2592 33 1 -0.2559 -8.3654 -1.7227 34 1 1.3929 -8.3400 -2.4270 35 1 2.7092 -3.7377 -0.6578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465813605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:39 Heat of formation + Delta-G solvation = -85.336947 kcal Electronic energy + Delta-G solvation = -21281.095630 eV Core-core repulsion = 17858.517795 eV Total energy + Delta-G solvation = -3422.577835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71238 -39.01224 -37.66668 -36.24025 -34.64192 -33.64729 -31.35148 -30.77438 -29.42814 -28.36256 -26.09114 -23.95335 -22.81245 -21.89692 -21.17780 -19.74454 -18.51434 -17.90979 -16.85864 -16.37734 -15.92564 -15.42441 -15.22102 -14.98627 -14.53671 -14.28813 -13.99720 -13.70381 -13.34735 -13.10290 -12.83727 -12.55119 -12.42769 -11.93280 -11.83419 -11.54010 -11.37451 -11.27658 -11.05989 -10.92002 -10.47033 -10.12104 -9.87335 -9.81453 -9.43682 -9.32993 -8.14679 -7.81811 -7.15474 -6.92494 -4.69372 2.33950 2.68035 2.97038 3.00067 3.03543 3.18795 3.27872 3.73468 3.78996 3.89225 4.20740 4.53807 4.60785 4.76965 4.95847 5.04806 5.32040 5.39085 5.57126 5.59939 5.79441 5.85954 5.90553 6.42162 6.47384 6.54738 6.68495 6.82085 7.02921 7.19968 7.30326 7.37700 7.62957 7.77970 8.06059 8.34476 8.49927 8.65381 8.69861 9.58935 9.96988 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041374 B = 0.003729 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.590822 B = 7506.788640 C = 7820.580355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.145 3.855 10 C -0.225 4.225 11 C 0.104 3.896 12 N -0.557 5.557 13 C 0.346 3.654 14 N -0.654 5.654 15 C 0.487 3.513 16 O -0.464 6.464 17 C 0.083 3.917 18 O -0.535 6.535 19 C -0.136 4.136 20 C 0.050 3.950 21 O -0.368 6.368 22 C 0.034 3.966 23 C -0.305 4.305 24 H 0.284 0.716 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.403 0.597 28 H 0.378 0.622 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -10.698 -2.463 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.137 3.863 10 C -0.248 4.248 11 C -0.046 4.046 12 N -0.276 5.276 13 C 0.119 3.881 14 N -0.301 5.301 15 C 0.270 3.730 16 O -0.333 6.333 17 C 0.038 3.962 18 O -0.341 6.341 19 C -0.174 4.174 20 C -0.027 4.027 21 O -0.287 6.287 22 C -0.044 4.044 23 C -0.331 4.331 24 H 0.096 0.904 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.238 0.762 28 H 0.227 0.773 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.568 -11.942 -1.464 12.133 hybrid contribution 1.297 2.223 -0.812 2.699 sum 2.865 -9.719 -2.276 10.385 Atomic orbital electron populations 1.69787 1.07811 1.29774 1.33046 1.25993 0.94743 1.01667 0.91775 0.86238 0.80797 0.80186 0.79231 1.19377 1.19816 1.18223 1.19580 0.98484 0.90899 1.39529 0.89950 1.17563 0.90189 0.91433 0.87113 1.22214 1.00789 0.98280 1.03519 1.21884 0.97813 0.87625 0.97322 1.67189 1.13992 1.28778 1.17664 1.17980 0.92712 0.82759 0.94623 1.43386 1.26249 1.05040 1.55430 1.20843 0.84774 0.85353 0.82077 1.90800 1.24658 1.85076 1.32762 1.23061 0.82570 0.93734 0.96816 1.86653 1.16574 1.60968 1.69876 1.22952 1.02482 0.93278 0.98640 1.23211 0.99777 0.97490 0.82207 1.88880 1.89574 1.18521 1.31723 1.24132 1.01875 0.82941 0.95453 1.21161 1.06865 0.91881 1.13154 0.90443 0.85505 0.85823 0.76187 0.77330 0.88865 0.87196 0.91786 0.89382 0.90376 0.87851 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 10.94 55.55 0.61 -18.46 16 2 C 0.08 1.86 5.18 -17.34 -0.09 1.77 16 3 Si 0.91 17.47 29.60 -169.99 -5.03 12.44 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -11.36 9.11 -37.65 -0.34 -11.70 16 8 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16 9 C 0.15 3.72 5.61 -106.55 -0.60 3.12 16 10 C -0.22 -5.72 8.80 -38.70 -0.34 -6.06 16 11 C 0.10 2.55 11.15 -17.68 -0.20 2.35 16 12 N -0.56 -13.90 7.85 -12.52 -0.10 -14.00 16 13 C 0.35 7.88 7.42 -154.70 -1.15 6.73 16 14 N -0.65 -11.45 5.34 -11.49 -0.06 -11.51 16 15 C 0.49 8.52 6.82 -10.98 -0.07 8.45 16 16 O -0.46 -10.05 13.81 5.56 0.08 -9.97 16 17 C 0.08 1.10 1.34 -89.76 -0.12 0.98 16 18 O -0.53 -6.33 13.02 -35.23 -0.46 -6.79 16 19 C -0.14 -1.69 6.30 -25.20 -0.16 -1.84 16 20 C 0.05 0.54 7.70 37.74 0.29 0.83 16 21 O -0.37 -4.74 11.52 -35.23 -0.41 -5.14 16 22 C 0.03 0.40 6.89 38.21 0.26 0.67 16 23 C -0.30 -7.08 9.73 -38.48 -0.37 -7.46 16 24 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 25 H 0.13 3.26 6.17 -52.49 -0.32 2.94 16 26 H 0.12 2.72 8.06 -52.49 -0.42 2.29 16 27 H 0.40 5.24 7.36 -40.82 -0.30 4.94 16 28 H 0.38 2.93 7.84 45.56 0.36 3.29 16 29 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.11 1.49 6.79 -51.93 -0.35 1.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -32.00 300.48 -6.85 -38.85 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.12 Total: 12.22 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.89 Total: -2.15 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.45 Total: -43.98 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.79 Total: -21.90 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.00 -6.85 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.482 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds