Wall clock time and date at job start Tue Mar 31 2020 00:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86796 * 120.00535 * 2 1 4 4 H 1.48505 * 109.47086 * 274.75753 * 3 2 1 5 5 H 1.48506 * 109.47061 * 34.75041 * 3 2 1 6 6 H 1.48494 * 109.47441 * 154.75448 * 3 2 1 7 7 C 1.40037 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 161.52796 * 7 2 1 9 9 C 1.41531 * 120.00256 * 341.53144 * 7 2 1 10 10 C 1.41179 * 120.99859 * 337.38241 * 9 7 2 11 11 C 1.37586 * 119.02125 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.10541 * 359.71966 * 11 10 9 13 13 C 1.32474 * 122.23202 * 0.57297 * 12 11 10 14 14 N 1.39464 * 119.57991 * 179.70166 * 13 12 11 15 15 C 1.34777 * 119.99897 * 4.30790 * 14 13 12 16 16 O 1.21273 * 120.00269 * 355.19903 * 15 14 13 17 17 C 1.50707 * 119.99804 * 175.20021 * 15 14 13 18 18 O 1.42902 * 110.82810 * 37.19594 * 17 15 14 19 19 C 1.54814 * 110.90267 * 160.83762 * 17 15 14 20 20 C 1.54107 * 104.18356 * 139.08031 * 19 17 15 21 21 O 1.43748 * 107.29266 * 2.02825 * 20 19 17 22 22 C 1.44375 * 106.97560 * 333.48880 * 21 20 19 23 23 C 1.38600 * 120.83791 * 359.43048 * 13 12 11 24 24 H 0.96993 * 119.99324 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.48897 * 359.95476 * 10 9 7 26 26 H 1.07994 * 119.44913 * 180.02562 * 11 10 9 27 27 H 0.97002 * 120.00124 * 184.30041 * 14 13 12 28 28 H 0.96701 * 113.99701 * 297.79657 * 18 17 15 29 29 H 1.09003 * 110.48719 * 257.75216 * 19 17 15 30 30 H 1.08994 * 110.48793 * 20.40905 * 19 17 15 31 31 H 1.08995 * 109.87798 * 242.60394 * 20 19 17 32 32 H 1.09001 * 110.00374 * 121.52195 * 20 19 17 33 33 H 1.09007 * 110.61758 * 281.55652 * 22 21 20 34 34 H 1.09002 * 110.61638 * 158.56292 * 22 21 20 35 35 H 1.08001 * 120.59907 * 180.24925 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3886 2.1044 -1.3953 5 1 1.4929 2.6216 0.7981 6 1 3.5857 1.4131 0.5971 7 6 2.0076 -1.2128 -0.0005 8 1 3.0459 -1.2367 -0.2969 9 6 1.3546 -2.4071 0.3872 10 6 0.2043 -2.3743 1.2051 11 6 -0.3985 -3.5599 1.5571 12 7 0.0782 -4.7184 1.1384 13 6 1.1571 -4.8040 0.3745 14 7 1.6161 -6.0570 -0.0308 15 6 0.9150 -7.1649 0.2815 16 8 -0.0671 -7.0819 0.9881 17 6 1.3515 -8.5069 -0.2474 18 8 2.7770 -8.6041 -0.2721 19 6 0.7337 -9.6564 0.5855 20 6 0.3303 -10.7093 -0.4649 21 8 0.7361 -10.2083 -1.7498 22 6 0.7548 -8.7679 -1.6538 23 6 1.8323 -3.6637 -0.0317 24 1 -0.4849 0.8400 0.0004 25 1 -0.1964 -1.4324 1.5496 26 1 -1.2790 -3.5428 2.1821 27 1 2.4399 -6.1312 -0.5376 28 1 3.2051 -7.9604 -0.8531 29 1 1.4717 -10.0678 1.2742 30 1 -0.1429 -9.3048 1.1295 31 1 -0.7497 -10.8547 -0.4481 32 1 0.8346 -11.6535 -0.2592 33 1 -0.2559 -8.3654 -1.7227 34 1 1.3929 -8.3400 -2.4270 35 1 2.7092 -3.7377 -0.6578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465813605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:38 Heat of formation + Delta-G solvation = -109.611811 kcal Electronic energy + Delta-G solvation = -21282.148267 eV Core-core repulsion = 17858.517795 eV Total energy + Delta-G solvation = -3423.630472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96569 -40.47554 -39.19256 -37.28160 -36.33664 -35.33173 -32.65412 -32.34741 -30.77544 -29.74089 -27.95510 -25.23658 -23.91880 -23.71282 -22.64021 -21.07962 -19.96238 -19.44808 -17.99878 -17.70403 -17.22039 -16.84137 -16.63705 -16.23162 -16.08195 -15.93617 -15.68403 -14.97341 -14.67066 -14.38275 -14.28197 -14.14266 -13.83136 -13.22908 -13.00367 -12.95219 -12.80712 -12.77172 -12.37866 -12.09658 -11.97690 -11.85307 -11.52949 -11.19454 -10.87207 -10.63968 -10.03658 -9.63432 -8.94030 -8.70994 -6.59337 0.66158 0.92777 1.40537 1.47253 1.55738 1.69084 1.82834 2.18416 2.74639 2.78589 2.92577 3.12247 3.54976 3.64757 3.72204 4.07054 4.09780 4.13898 4.41671 4.50366 4.69507 4.75638 4.78219 4.84572 4.90309 4.95558 4.99252 5.20561 5.44143 5.55795 5.64329 5.90246 6.01940 6.29787 6.47989 6.57964 6.75773 6.78400 7.09990 7.77463 8.21487 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041374 B = 0.003729 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.590822 B = 7506.788640 C = 7820.580355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.481 4.481 8 H 0.090 0.910 9 C 0.117 3.883 10 C -0.246 4.246 11 C 0.098 3.902 12 N -0.581 5.581 13 C 0.345 3.655 14 N -0.642 5.642 15 C 0.486 3.514 16 O -0.509 6.509 17 C 0.097 3.903 18 O -0.536 6.536 19 C -0.139 4.139 20 C 0.050 3.950 21 O -0.379 6.379 22 C 0.036 3.964 23 C -0.313 4.313 24 H 0.294 0.706 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.425 0.575 28 H 0.397 0.603 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -11.095 -3.488 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.108 0.892 9 C 0.109 3.891 10 C -0.269 4.269 11 C -0.053 4.053 12 N -0.301 5.301 13 C 0.117 3.883 14 N -0.291 5.291 15 C 0.270 3.730 16 O -0.381 6.381 17 C 0.052 3.948 18 O -0.344 6.344 19 C -0.177 4.177 20 C -0.026 4.026 21 O -0.297 6.297 22 C -0.041 4.041 23 C -0.339 4.339 24 H 0.105 0.895 25 H 0.134 0.866 26 H 0.156 0.844 27 H 0.264 0.736 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.148 -12.373 -2.525 13.014 hybrid contribution 0.811 2.290 -0.501 2.480 sum 3.959 -10.083 -3.025 11.247 Atomic orbital electron populations 1.69834 1.09364 1.31298 1.32913 1.26902 0.95444 1.04925 0.90640 0.85098 0.79222 0.75331 0.79558 1.18447 1.19157 1.17902 1.19914 0.99017 0.91717 1.40424 0.89226 1.17976 0.90653 0.92889 0.87605 1.22175 1.01780 0.98098 1.04870 1.22151 0.98246 0.87536 0.97360 1.67297 1.15244 1.28772 1.18834 1.18270 0.91855 0.84706 0.93516 1.43331 1.27104 1.03478 1.55191 1.21686 0.83822 0.86520 0.80924 1.90781 1.26633 1.85933 1.34727 1.22842 0.83478 0.90893 0.97575 1.86648 1.15476 1.61632 1.70657 1.22983 1.02048 0.93468 0.99168 1.23343 1.00757 0.97624 0.80894 1.88874 1.89682 1.18609 1.32570 1.24173 1.01848 0.82926 0.95180 1.21380 1.07671 0.91363 1.13446 0.89547 0.86596 0.84355 0.73617 0.75167 0.88148 0.88824 0.90822 0.87222 0.91376 0.85236 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.94 10.94 21.84 0.24 -39.70 16 2 C 0.04 1.83 5.18 85.29 0.44 2.27 16 3 Si 0.99 35.09 29.60 68.60 2.03 37.12 16 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 5 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.48 -24.10 9.11 23.52 0.21 -23.89 16 8 H 0.09 4.21 7.91 -2.91 -0.02 4.18 16 9 C 0.12 6.08 5.61 -21.12 -0.12 5.96 16 10 C -0.25 -12.88 8.80 22.84 0.20 -12.68 16 11 C 0.10 4.92 11.15 84.50 0.94 5.86 16 12 N -0.58 -29.48 7.85 -193.54 -1.52 -31.00 16 13 C 0.34 15.64 7.42 132.75 0.98 16.62 16 14 N -0.64 -21.73 5.34 -308.66 -1.65 -23.38 16 15 C 0.49 16.61 6.82 87.66 0.60 17.21 16 16 O -0.51 -22.26 13.81 -3.01 -0.04 -22.30 16 17 C 0.10 2.40 1.34 -10.24 -0.01 2.39 16 18 O -0.54 -11.14 13.02 -148.98 -1.94 -13.08 16 19 C -0.14 -3.26 6.30 31.59 0.20 -3.06 16 20 C 0.05 0.98 7.70 72.36 0.56 1.54 16 21 O -0.38 -8.78 11.52 -148.98 -1.72 -10.49 16 22 C 0.04 0.79 6.89 72.66 0.50 1.29 16 23 C -0.31 -14.49 9.73 22.99 0.22 -14.27 16 24 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 25 H 0.12 6.20 6.17 -2.91 -0.02 6.18 16 26 H 0.14 6.28 8.06 -2.91 -0.02 6.25 16 27 H 0.42 10.09 7.36 -92.71 -0.68 9.41 16 28 H 0.40 4.79 7.84 -74.06 -0.58 4.21 16 29 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 30 H 0.09 2.53 6.79 -2.39 -0.02 2.51 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.64 8.04 -2.38 -0.02 1.62 16 34 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -69.56 300.48 0.02 -69.54 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.11 Total: 34.04 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 4.73 Total: -0.75 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -2.93 Total: -94.08 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -3.70 Total: -45.87 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -69.56 0.02 -69.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.071 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds