Wall clock time and date at job start Tue Mar 31 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46787 * 299.99327 * 3 2 1 6 6 H 1.48496 * 109.47416 * 59.99344 * 3 2 1 7 7 C 1.40037 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00267 * 170.22654 * 7 2 1 9 9 C 1.41549 * 119.99778 * 350.23029 * 7 2 1 10 10 C 1.41172 * 120.99514 * 151.69838 * 9 7 2 11 11 C 1.37595 * 119.01436 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.10846 * 359.73980 * 11 10 9 13 13 C 1.32473 * 122.22843 * 0.53240 * 12 11 10 14 14 N 1.39468 * 119.57721 * 179.74496 * 13 12 11 15 15 C 1.34788 * 120.00234 * 5.10209 * 14 13 12 16 16 O 1.21279 * 119.99461 * 354.95401 * 15 14 13 17 17 C 1.50694 * 120.00385 * 174.95638 * 15 14 13 18 18 O 1.42907 * 110.45499 * 327.60582 * 17 15 14 19 19 C 1.54502 * 110.51325 * 204.99909 * 17 15 14 20 20 C 1.54475 * 104.06478 * 241.35408 * 19 17 15 21 21 O 1.44426 * 104.80190 * 336.02110 * 20 19 17 22 22 C 1.44418 * 105.27554 * 40.51149 * 21 20 19 23 23 C 1.38588 * 120.84597 * 359.47182 * 13 12 11 24 24 H 0.97004 * 119.99764 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.49185 * 0.04083 * 10 9 7 26 26 H 1.07997 * 119.44171 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00491 * 185.09613 * 14 13 12 28 28 H 0.96698 * 114.00306 * 57.39272 * 18 17 15 29 29 H 1.09004 * 110.51460 * 122.70257 * 19 17 15 30 30 H 1.09004 * 110.51151 * 0.02562 * 19 17 15 31 31 H 1.08999 * 110.37563 * 217.19031 * 20 19 17 32 32 H 1.09004 * 110.46767 * 94.89854 * 20 19 17 33 33 H 1.08996 * 110.37715 * 78.31975 * 22 21 20 34 34 H 1.09000 * 110.37394 * 200.65786 * 22 21 20 35 35 H 1.07999 * 120.60720 * 180.27871 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8828 2.3963 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0757 -1.2197 -0.1582 9 6 1.3152 -2.4296 0.2091 10 6 1.7913 -3.6402 -0.3393 11 6 1.0857 -4.7992 -0.1114 12 7 -0.0193 -4.7943 0.6122 13 6 -0.5105 -3.6850 1.1442 14 7 -1.6846 -3.7427 1.8946 15 6 -2.2562 -4.9339 2.1613 16 8 -1.8021 -5.9471 1.6733 17 6 -3.4593 -5.0068 3.0658 18 8 -3.3942 -3.9887 4.0666 19 6 -3.5613 -6.4029 3.7197 20 6 -4.9134 -6.9551 3.2167 21 8 -5.6900 -5.7835 2.8848 22 6 -4.7620 -4.8806 2.2451 23 6 0.1306 -2.4688 0.9694 24 1 -0.4850 0.8401 -0.0004 25 1 2.6961 -3.6563 -0.9289 26 1 1.4439 -5.7293 -0.5273 27 1 -2.0900 -2.9257 2.2247 28 1 -3.3290 -3.0916 3.7114 29 1 -3.5644 -6.3165 4.8063 30 1 -2.7412 -7.0404 3.3891 31 1 -5.4062 -7.5266 4.0033 32 1 -4.7666 -7.5760 2.3329 33 1 -4.5901 -5.1822 1.2119 34 1 -5.1382 -3.8584 2.2854 35 1 -0.2708 -1.5675 1.4087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465813606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:41 Heat of formation + Delta-G solvation = -85.152383 kcal Electronic energy + Delta-G solvation = -21498.957538 eV Core-core repulsion = 18076.387706 eV Total energy + Delta-G solvation = -3422.569832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71122 -38.97238 -37.63788 -36.27671 -34.46792 -33.80558 -31.25206 -30.63087 -29.35203 -28.38505 -26.08223 -23.87399 -22.92153 -22.06811 -21.00426 -19.70760 -18.47489 -17.81033 -16.84647 -16.41969 -15.81941 -15.44614 -15.30295 -14.89024 -14.44881 -14.29853 -13.95659 -13.57792 -13.35882 -12.95041 -12.74387 -12.64679 -12.48962 -12.02564 -11.82271 -11.50149 -11.29387 -11.25986 -10.98312 -10.83086 -10.34872 -10.20702 -9.90744 -9.86189 -9.48488 -9.35842 -8.05871 -7.85520 -7.17573 -6.85254 -4.70918 2.32812 2.70937 2.98062 3.02267 3.03391 3.23391 3.24651 3.79379 3.80675 3.95187 4.28611 4.59056 4.62457 4.79845 5.03818 5.12079 5.35457 5.45121 5.55579 5.57940 5.80718 5.87662 5.88406 6.43329 6.48535 6.50898 6.69285 6.84078 7.02709 7.23631 7.26375 7.33625 7.63598 7.81977 8.07028 8.29829 8.55714 8.65321 8.69410 9.54349 10.02803 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004451 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.008031 B = 6289.770825 C = 7007.108148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.278 4.278 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.331 3.669 14 N -0.652 5.652 15 C 0.484 3.516 16 O -0.468 6.468 17 C 0.085 3.915 18 O -0.538 6.538 19 C -0.135 4.135 20 C 0.047 3.953 21 O -0.367 6.367 22 C 0.032 3.968 23 C -0.234 4.234 24 H 0.281 0.719 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.405 0.595 28 H 0.378 0.622 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -3.337 5.265 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.302 4.302 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.107 3.893 14 N -0.298 5.298 15 C 0.267 3.733 16 O -0.337 6.337 17 C 0.040 3.960 18 O -0.344 6.344 19 C -0.172 4.172 20 C -0.030 4.030 21 O -0.285 6.285 22 C -0.046 4.046 23 C -0.259 4.259 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.240 0.760 28 H 0.227 0.773 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.958 -5.246 5.526 11.017 hybrid contribution 0.876 2.621 -0.500 2.808 sum -7.083 -2.625 5.026 9.073 Atomic orbital electron populations 1.69739 1.07603 1.29229 1.35719 1.25941 0.94884 1.01470 0.91897 0.86148 0.80858 0.80449 0.78649 1.18322 1.19838 1.19635 1.19621 0.95920 0.89954 1.43208 0.89911 1.17598 0.90173 0.92336 0.86414 1.21973 1.04449 0.94573 1.09192 1.21777 0.90687 0.96614 0.94630 1.67177 1.15650 1.28081 1.16271 1.18169 0.86717 0.91105 0.93300 1.43374 1.25010 1.08800 1.52662 1.20952 0.85198 0.84479 0.82672 1.90791 1.60730 1.33596 1.48595 1.22946 0.93243 0.91357 0.88432 1.86664 1.96419 1.17632 1.33677 1.22930 0.99831 0.92192 1.02296 1.23485 0.90351 0.88768 1.00360 1.89128 1.32419 1.28115 1.78852 1.24020 0.87826 0.96255 0.96494 1.21609 1.01369 0.95362 1.07552 0.90792 0.87786 0.85722 0.76006 0.77315 0.88869 0.87600 0.88478 0.91455 0.90682 0.87783 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.01 10.83 55.55 0.60 -18.41 16 2 C 0.08 1.79 5.30 -17.34 -0.09 1.69 16 3 Si 0.91 17.52 29.57 -169.99 -5.03 12.49 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.41 9.13 -37.65 -0.34 -11.76 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.66 5.58 -106.55 -0.59 3.07 16 10 C -0.28 -6.65 9.90 -38.70 -0.38 -7.03 16 11 C 0.12 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.55 -13.69 7.85 -12.52 -0.10 -13.79 16 13 C 0.33 7.75 7.42 -154.70 -1.15 6.61 16 14 N -0.65 -12.08 5.28 -11.49 -0.06 -12.14 16 15 C 0.48 8.76 6.65 -10.98 -0.07 8.68 16 16 O -0.47 -10.21 13.89 5.56 0.08 -10.13 16 17 C 0.09 1.19 1.42 -90.21 -0.13 1.06 16 18 O -0.54 -6.86 12.92 -35.23 -0.46 -7.32 16 19 C -0.13 -1.75 6.41 -25.17 -0.16 -1.91 16 20 C 0.05 0.54 7.63 37.93 0.29 0.83 16 21 O -0.37 -4.93 11.65 -35.23 -0.41 -5.34 16 22 C 0.03 0.40 6.92 37.93 0.26 0.67 16 23 C -0.23 -5.72 8.59 -38.48 -0.33 -6.05 16 24 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 25 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 26 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 27 H 0.40 5.93 7.22 -40.82 -0.29 5.64 16 28 H 0.38 3.43 7.60 45.56 0.35 3.78 16 29 H 0.09 1.13 8.00 -51.93 -0.42 0.71 16 30 H 0.11 1.50 6.81 -51.93 -0.35 1.15 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.13 3.14 6.27 -52.49 -0.33 2.81 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -31.51 299.81 -6.87 -38.37 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -3.11 Total: 13.34 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.90 Total: -1.60 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.44 Total: -44.34 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.79 Total: -22.79 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.51 -6.87 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.782 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds