Wall clock time and date at job start Tue Mar 31 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46787 * 299.99327 * 3 2 1 6 6 H 1.48496 * 109.47416 * 59.99344 * 3 2 1 7 7 C 1.40037 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00267 * 170.22654 * 7 2 1 9 9 C 1.41549 * 119.99778 * 350.23029 * 7 2 1 10 10 C 1.41172 * 120.99514 * 151.69838 * 9 7 2 11 11 C 1.37595 * 119.01436 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.10846 * 359.73980 * 11 10 9 13 13 C 1.32473 * 122.22843 * 0.53240 * 12 11 10 14 14 N 1.39468 * 119.57721 * 179.74496 * 13 12 11 15 15 C 1.34788 * 120.00234 * 5.10209 * 14 13 12 16 16 O 1.21279 * 119.99461 * 354.95401 * 15 14 13 17 17 C 1.50694 * 120.00385 * 174.95638 * 15 14 13 18 18 O 1.42907 * 110.45499 * 327.60582 * 17 15 14 19 19 C 1.54502 * 110.51325 * 204.99909 * 17 15 14 20 20 C 1.54475 * 104.06478 * 241.35408 * 19 17 15 21 21 O 1.44426 * 104.80190 * 336.02110 * 20 19 17 22 22 C 1.44418 * 105.27554 * 40.51149 * 21 20 19 23 23 C 1.38588 * 120.84597 * 359.47182 * 13 12 11 24 24 H 0.97004 * 119.99764 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.49185 * 0.04083 * 10 9 7 26 26 H 1.07997 * 119.44171 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00491 * 185.09613 * 14 13 12 28 28 H 0.96698 * 114.00306 * 57.39272 * 18 17 15 29 29 H 1.09004 * 110.51460 * 122.70257 * 19 17 15 30 30 H 1.09004 * 110.51151 * 0.02562 * 19 17 15 31 31 H 1.08999 * 110.37563 * 217.19031 * 20 19 17 32 32 H 1.09004 * 110.46767 * 94.89854 * 20 19 17 33 33 H 1.08996 * 110.37715 * 78.31975 * 22 21 20 34 34 H 1.09000 * 110.37394 * 200.65786 * 22 21 20 35 35 H 1.07999 * 120.60720 * 180.27871 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8828 2.3963 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0757 -1.2197 -0.1582 9 6 1.3152 -2.4296 0.2091 10 6 1.7913 -3.6402 -0.3393 11 6 1.0857 -4.7992 -0.1114 12 7 -0.0193 -4.7943 0.6122 13 6 -0.5105 -3.6850 1.1442 14 7 -1.6846 -3.7427 1.8946 15 6 -2.2562 -4.9339 2.1613 16 8 -1.8021 -5.9471 1.6733 17 6 -3.4593 -5.0068 3.0658 18 8 -3.3942 -3.9887 4.0666 19 6 -3.5613 -6.4029 3.7197 20 6 -4.9134 -6.9551 3.2167 21 8 -5.6900 -5.7835 2.8848 22 6 -4.7620 -4.8806 2.2451 23 6 0.1306 -2.4688 0.9694 24 1 -0.4850 0.8401 -0.0004 25 1 2.6961 -3.6563 -0.9289 26 1 1.4439 -5.7293 -0.5273 27 1 -2.0900 -2.9257 2.2247 28 1 -3.3290 -3.0916 3.7114 29 1 -3.5644 -6.3165 4.8063 30 1 -2.7412 -7.0404 3.3891 31 1 -5.4062 -7.5266 4.0033 32 1 -4.7666 -7.5760 2.3329 33 1 -4.5901 -5.1822 1.2119 34 1 -5.1382 -3.8584 2.2854 35 1 -0.2708 -1.5675 1.4087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465813606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:41 Heat of formation + Delta-G solvation = -108.719255 kcal Electronic energy + Delta-G solvation = -21499.979474 eV Core-core repulsion = 18076.387706 eV Total energy + Delta-G solvation = -3423.591768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01483 -40.47812 -39.15427 -37.39077 -36.17880 -35.49788 -32.50856 -32.28810 -30.79161 -29.72118 -27.93749 -25.16726 -24.06265 -23.87802 -22.52168 -21.10440 -19.82656 -19.52107 -18.01738 -17.63656 -17.28229 -17.02997 -16.42609 -16.34513 -16.10043 -15.90055 -15.62595 -14.91778 -14.60190 -14.40908 -14.33334 -14.20947 -13.68639 -13.23156 -13.14193 -12.89740 -12.85572 -12.71994 -12.32724 -12.17136 -11.87975 -11.82241 -11.56643 -11.21851 -10.98672 -10.73470 -9.94056 -9.66124 -8.95109 -8.62707 -6.59973 0.62647 0.96305 1.42132 1.46164 1.56088 1.65420 1.82821 2.20473 2.75543 2.82519 2.92855 3.14641 3.51027 3.62203 3.71405 4.06860 4.13921 4.14794 4.39048 4.50537 4.69198 4.72724 4.74748 4.83021 4.88371 4.90306 5.03406 5.21736 5.42561 5.54417 5.55481 5.87674 6.03938 6.29236 6.47475 6.54352 6.75105 6.81911 7.07368 7.74183 8.28209 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004451 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.008031 B = 6289.770825 C = 7007.108148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.292 4.292 11 C 0.112 3.888 12 N -0.576 5.576 13 C 0.329 3.671 14 N -0.644 5.644 15 C 0.483 3.517 16 O -0.508 6.508 17 C 0.098 3.902 18 O -0.539 6.539 19 C -0.137 4.137 20 C 0.048 3.952 21 O -0.376 6.376 22 C 0.034 3.966 23 C -0.250 4.250 24 H 0.292 0.708 25 H 0.117 0.883 26 H 0.151 0.849 27 H 0.421 0.579 28 H 0.394 0.606 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 -2.341 5.976 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.106 3.894 10 C -0.316 4.316 11 C -0.042 4.042 12 N -0.296 5.296 13 C 0.103 3.897 14 N -0.292 5.292 15 C 0.268 3.732 16 O -0.380 6.380 17 C 0.052 3.948 18 O -0.348 6.348 19 C -0.175 4.175 20 C -0.029 4.029 21 O -0.295 6.295 22 C -0.043 4.043 23 C -0.275 4.275 24 H 0.103 0.897 25 H 0.135 0.865 26 H 0.169 0.831 27 H 0.260 0.740 28 H 0.245 0.755 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.829 -4.235 6.253 11.619 hybrid contribution 1.112 2.287 -0.721 2.643 sum -7.717 -1.949 5.532 9.693 Atomic orbital electron populations 1.69765 1.08831 1.30834 1.34984 1.26763 0.95694 1.04381 0.90856 0.85055 0.79243 0.75808 0.79016 1.18335 1.19166 1.18598 1.19891 0.96192 0.90924 1.44628 0.89916 1.18026 0.91058 0.93299 0.87039 1.22159 1.05210 0.94477 1.09761 1.22230 0.90300 0.97584 0.94094 1.67310 1.16402 1.28705 1.17185 1.18415 0.87771 0.90524 0.92988 1.43368 1.23753 1.10204 1.51913 1.21762 0.85693 0.83441 0.82270 1.90766 1.62181 1.34838 1.50176 1.22794 0.91526 0.92395 0.88046 1.86657 1.96227 1.18559 1.33330 1.22974 1.00243 0.91390 1.02877 1.23624 0.89539 0.88377 1.01317 1.89124 1.32778 1.28700 1.78853 1.24054 0.87036 0.97622 0.95613 1.21599 1.01824 0.95701 1.08377 0.89699 0.86495 0.83128 0.74016 0.75454 0.87775 0.89189 0.85682 0.91377 0.91610 0.85245 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.73 10.83 21.84 0.24 -38.50 16 2 C 0.04 1.83 5.30 85.29 0.45 2.28 16 3 Si 0.99 35.08 29.57 68.60 2.03 37.11 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.49 -24.57 9.13 23.52 0.21 -24.36 16 8 H 0.08 4.03 7.87 -2.91 -0.02 4.01 16 9 C 0.11 5.94 5.58 -21.11 -0.12 5.83 16 10 C -0.29 -14.20 9.90 22.84 0.23 -13.97 16 11 C 0.11 5.26 11.15 84.50 0.94 6.20 16 12 N -0.58 -28.88 7.85 -193.54 -1.52 -30.40 16 13 C 0.33 15.54 7.42 132.75 0.98 16.53 16 14 N -0.64 -23.71 5.28 -308.65 -1.63 -25.34 16 15 C 0.48 17.30 6.65 87.65 0.58 17.88 16 16 O -0.51 -22.38 13.89 -3.03 -0.04 -22.42 16 17 C 0.10 2.58 1.42 -10.53 -0.01 2.57 16 18 O -0.54 -12.56 12.92 -148.98 -1.92 -14.49 16 19 C -0.14 -3.37 6.41 31.61 0.20 -3.17 16 20 C 0.05 1.00 7.63 72.48 0.55 1.55 16 21 O -0.38 -9.25 11.65 -148.98 -1.74 -10.98 16 22 C 0.03 0.81 6.92 72.48 0.50 1.31 16 23 C -0.25 -12.42 8.59 22.98 0.20 -12.22 16 24 H 0.29 12.28 8.29 -92.71 -0.77 11.52 16 25 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 26 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 27 H 0.42 12.01 7.22 -92.71 -0.67 11.34 16 28 H 0.39 6.21 7.60 -74.06 -0.56 5.65 16 29 H 0.10 2.32 8.00 -2.38 -0.02 2.30 16 30 H 0.09 2.53 6.81 -2.38 -0.02 2.51 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 1.68 7.86 -2.39 -0.02 1.66 16 34 H 0.13 2.34 8.09 -2.39 -0.02 2.32 16 35 H 0.13 6.27 6.27 -2.91 -0.02 6.25 16 Total: -1.00 -67.60 299.81 0.06 -67.54 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.08 Total: 37.05 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.72 Total: 0.43 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -2.91 Total: -94.23 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -3.70 Total: -47.89 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -67.60 0.06 -67.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.180 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds