Wall clock time and date at job start Tue Mar 31 2020 00:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48504 * 109.46970 * 239.99531 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46986 * 119.99704 * 3 2 1 7 7 C 1.37878 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99805 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 O 1.42890 * 110.64780 * 59.29039 * 9 7 2 11 11 C 1.55161 * 110.71882 * 182.43866 * 9 7 2 12 12 C 1.55388 * 101.36525 * 153.94296 * 11 9 7 13 13 N 1.47434 * 104.87284 * 323.01399 * 12 11 9 14 14 C 1.34774 * 125.64425 * 204.16847 * 13 12 11 15 15 O 1.21541 * 119.99836 * 173.17910 * 14 13 12 16 16 C 1.47965 * 120.00498 * 353.18348 * 14 13 12 17 17 C 1.39429 * 119.74074 * 349.35179 * 16 14 13 18 18 C 1.38469 * 119.06635 * 179.71392 * 17 16 14 19 19 C 1.38718 * 118.53145 * 0.55222 * 18 17 16 20 20 C 1.38400 * 119.39814 * 359.72643 * 19 18 17 21 21 N 1.31727 * 120.89698 * 359.97438 * 20 19 18 22 22 O 1.41603 * 119.20965 * 180.02562 * 21 20 19 23 23 C 1.47016 * 108.70350 * 24.13423 * 13 12 11 24 24 H 0.97000 * 119.99931 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99907 * 300.70724 * 10 9 7 26 26 H 1.08999 * 110.99851 * 272.10633 * 11 9 7 27 27 H 1.08992 * 111.00782 * 35.96504 * 11 9 7 28 28 H 1.08997 * 110.34375 * 204.16572 * 12 11 9 29 29 H 1.08999 * 110.44638 * 81.91437 * 12 11 9 30 30 H 1.08001 * 120.46903 * 359.97438 * 17 16 14 31 31 H 1.08001 * 120.73151 * 180.28005 * 18 17 16 32 32 H 1.08009 * 120.30316 * 179.75708 * 19 18 17 33 33 H 1.07996 * 119.55523 * 179.97438 * 20 19 18 34 34 H 1.09005 * 109.88468 * 239.52397 * 23 13 12 35 35 H 1.08997 * 109.88827 * 118.35971 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4081 -2.5944 -1.1494 11 6 2.2322 -3.6995 0.0629 12 6 1.3419 -4.7887 0.7230 13 7 0.5226 -4.0612 1.7094 14 6 -0.0439 -4.5975 2.8084 15 8 -0.5962 -3.8800 3.6192 16 6 0.0065 -6.0599 3.0281 17 6 0.4381 -6.8991 2.0016 18 6 0.4855 -8.2649 2.2243 19 6 0.0888 -8.7485 3.4625 20 6 -0.3346 -7.8596 4.4351 21 7 -0.3648 -6.5638 4.2002 22 8 -0.8038 -5.6864 5.2214 23 6 0.4266 -2.6536 1.2960 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2488 -1.8878 -1.2151 26 1 2.5460 -3.9999 -0.9368 27 1 3.0942 -3.4674 0.6882 28 1 1.9619 -5.5343 1.2209 29 1 0.7047 -5.2633 -0.0232 30 1 0.7353 -6.4892 1.0476 31 1 0.8198 -8.9392 1.4497 32 1 0.1105 -9.8090 3.6658 33 1 -0.6444 -8.2333 5.3998 34 1 0.8357 -2.0098 2.0747 35 1 -0.6146 -2.3931 1.1060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469406322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:24 Heat of formation + Delta-G solvation = 11.415123 kcal Electronic energy + Delta-G solvation = -21926.079063 eV Core-core repulsion = 18507.696713 eV Total energy + Delta-G solvation = -3418.382350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55133 -39.20410 -37.21660 -35.06342 -34.15670 -32.25167 -32.24101 -30.16662 -29.66012 -28.08208 -25.91389 -24.90983 -23.80915 -22.74167 -20.26176 -19.58596 -17.67269 -17.40121 -17.15588 -17.01954 -15.93008 -15.44398 -15.29330 -14.88109 -14.66201 -14.59984 -14.18761 -13.26016 -13.16617 -12.96589 -12.68934 -12.40359 -12.06508 -11.56064 -11.49727 -11.37091 -11.04018 -10.82458 -10.73746 -10.54914 -10.25846 -9.80426 -9.63181 -9.39178 -8.90726 -8.71106 -8.42588 -8.40398 -8.00677 -6.33036 -4.42046 0.13628 0.47210 2.34115 2.66232 3.21303 3.27837 3.28942 3.37449 3.53159 4.21590 4.23540 4.28538 4.33492 4.35418 4.59699 4.94218 5.00803 5.19018 5.38168 5.45814 5.51885 5.55978 5.65379 5.80809 6.00728 6.34536 6.56318 6.66060 6.75437 6.85523 7.06480 7.19243 7.28609 7.68714 7.91171 7.99484 8.55607 8.62035 9.24095 9.33702 10.74952 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.004830 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.057161 B = 5795.993828 C = 6320.024876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.083 3.917 13 N -0.604 5.604 14 C 0.556 3.444 15 O -0.477 6.477 16 C 0.063 3.937 17 C -0.118 4.118 18 C -0.092 4.092 19 C -0.109 4.109 20 C 0.059 3.941 21 N -0.092 5.092 22 O -0.498 6.498 23 C 0.105 3.895 24 H 0.272 0.728 25 H 0.386 0.614 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.191 0.809 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -18.542 -0.920 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.155 4.155 12 C -0.039 4.039 13 N -0.340 5.340 14 C 0.340 3.660 15 O -0.348 6.348 16 C -0.066 4.066 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.088 4.088 21 N 0.231 4.769 22 O -0.558 6.558 23 C -0.016 4.016 24 H 0.082 0.918 25 H 0.237 0.763 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.208 0.792 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.201 0.799 34 H 0.090 0.910 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.860 -18.266 -0.207 18.490 hybrid contribution -0.048 1.318 0.389 1.375 sum 2.812 -16.948 0.181 17.181 Atomic orbital electron populations 1.69616 1.06041 1.28257 1.49399 1.25072 0.95060 0.99858 0.93189 0.86434 0.79547 0.81979 0.78825 1.19966 1.21026 1.19960 1.21454 0.93694 0.90012 1.52742 0.91447 1.19477 0.86116 0.92201 0.81299 1.86071 1.51771 1.55084 1.46585 1.22880 0.97525 0.94685 1.00385 1.22895 0.93612 0.96133 0.91261 1.48602 1.50091 1.12965 1.22335 1.17082 0.81796 0.84992 0.82140 1.90927 1.41961 1.60075 1.41834 1.21177 1.01438 0.97211 0.86767 1.23271 0.95768 0.93631 1.00948 1.21821 0.97049 0.95271 0.97607 1.21986 0.96882 1.01310 0.92631 1.22712 1.00882 0.82502 1.02669 1.43325 1.17592 1.06815 1.09151 1.97746 1.75659 1.50896 1.31506 1.23170 1.02111 0.76967 0.99337 0.91764 0.76303 0.90054 0.90145 0.91108 0.90699 0.79243 0.82485 0.81853 0.79888 0.91028 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 10.96 55.43 0.61 -22.85 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.69 8.11 -34.44 -0.28 -13.96 16 8 H 0.07 1.67 7.77 -52.48 -0.41 1.26 16 9 C 0.25 5.72 0.85 -89.93 -0.08 5.64 16 10 O -0.59 -13.85 13.07 -35.23 -0.46 -14.31 16 11 C -0.12 -2.10 6.26 -24.32 -0.15 -2.25 16 12 C 0.08 1.27 4.90 -2.26 -0.01 1.26 16 13 N -0.60 -12.14 3.33 -171.28 -0.57 -12.71 16 14 C 0.56 12.05 7.75 -12.28 -0.10 11.95 16 15 O -0.48 -12.87 15.25 -17.60 -0.27 -13.14 16 16 C 0.06 1.05 6.68 -82.98 -0.55 0.50 16 17 C -0.12 -1.27 8.29 -39.05 -0.32 -1.59 16 18 C -0.09 -0.61 10.16 -39.32 -0.40 -1.01 16 19 C -0.11 -0.70 10.11 -39.34 -0.40 -1.10 16 20 C 0.06 0.65 10.69 -17.54 -0.19 0.47 16 21 N -0.09 -1.64 3.60 -9.79 -0.04 -1.68 16 22 O -0.50 -12.56 17.82 -34.40 -0.61 -13.18 16 23 C 0.10 2.49 5.38 -3.06 -0.02 2.47 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.39 9.52 7.23 45.56 0.33 9.85 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 28 H 0.07 0.83 6.14 -51.93 -0.32 0.51 16 29 H 0.08 1.00 7.20 -51.93 -0.37 0.63 16 30 H 0.19 1.78 3.42 -52.49 -0.18 1.60 16 31 H 0.16 0.41 8.06 -52.49 -0.42 -0.02 16 32 H 0.16 0.32 8.06 -52.48 -0.42 -0.10 16 33 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.07 1.88 7.82 -51.93 -0.41 1.48 16 35 H 0.07 1.79 8.00 -51.93 -0.42 1.37 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -37.74 295.57 -7.51 -45.25 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.02 Total: 8.82 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.59 Total: 4.13 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.00 Total: -37.24 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.34 Total: -40.62 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -37.74 -7.51 -45.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -37.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds