Wall clock time and date at job start Tue Mar 31 2020 00:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48504 * 109.46970 * 239.99531 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46986 * 119.99704 * 3 2 1 7 7 C 1.37878 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99805 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00172 * 0.02562 * 7 2 1 10 10 O 1.42890 * 110.64780 * 59.29039 * 9 7 2 11 11 C 1.55161 * 110.71882 * 182.43866 * 9 7 2 12 12 C 1.55388 * 101.36525 * 153.94296 * 11 9 7 13 13 N 1.47434 * 104.87284 * 323.01399 * 12 11 9 14 14 C 1.34774 * 125.64425 * 204.16847 * 13 12 11 15 15 O 1.21541 * 119.99836 * 173.17910 * 14 13 12 16 16 C 1.47965 * 120.00498 * 353.18348 * 14 13 12 17 17 C 1.39429 * 119.74074 * 349.35179 * 16 14 13 18 18 C 1.38469 * 119.06635 * 179.71392 * 17 16 14 19 19 C 1.38718 * 118.53145 * 0.55222 * 18 17 16 20 20 C 1.38400 * 119.39814 * 359.72643 * 19 18 17 21 21 N 1.31727 * 120.89698 * 359.97438 * 20 19 18 22 22 O 1.41603 * 119.20965 * 180.02562 * 21 20 19 23 23 C 1.47016 * 108.70350 * 24.13423 * 13 12 11 24 24 H 0.97000 * 119.99931 * 0.02562 * 1 2 3 25 25 H 0.96702 * 113.99907 * 300.70724 * 10 9 7 26 26 H 1.08999 * 110.99851 * 272.10633 * 11 9 7 27 27 H 1.08992 * 111.00782 * 35.96504 * 11 9 7 28 28 H 1.08997 * 110.34375 * 204.16572 * 12 11 9 29 29 H 1.08999 * 110.44638 * 81.91437 * 12 11 9 30 30 H 1.08001 * 120.46903 * 359.97438 * 17 16 14 31 31 H 1.08001 * 120.73151 * 180.28005 * 18 17 16 32 32 H 1.08009 * 120.30316 * 179.75708 * 19 18 17 33 33 H 1.07996 * 119.55523 * 179.97438 * 20 19 18 34 34 H 1.09005 * 109.88468 * 239.52397 * 23 13 12 35 35 H 1.08997 * 109.88827 * 118.35971 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4081 -2.5944 -1.1494 11 6 2.2322 -3.6995 0.0629 12 6 1.3419 -4.7887 0.7230 13 7 0.5226 -4.0612 1.7094 14 6 -0.0439 -4.5975 2.8084 15 8 -0.5962 -3.8800 3.6192 16 6 0.0065 -6.0599 3.0281 17 6 0.4381 -6.8991 2.0016 18 6 0.4855 -8.2649 2.2243 19 6 0.0888 -8.7485 3.4625 20 6 -0.3346 -7.8596 4.4351 21 7 -0.3648 -6.5638 4.2002 22 8 -0.8038 -5.6864 5.2214 23 6 0.4266 -2.6536 1.2960 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2488 -1.8878 -1.2151 26 1 2.5460 -3.9999 -0.9368 27 1 3.0942 -3.4674 0.6882 28 1 1.9619 -5.5343 1.2209 29 1 0.7047 -5.2633 -0.0232 30 1 0.7353 -6.4892 1.0476 31 1 0.8198 -8.9392 1.4497 32 1 0.1105 -9.8090 3.6658 33 1 -0.6444 -8.2333 5.3998 34 1 0.8357 -2.0098 2.0747 35 1 -0.6146 -2.3931 1.1060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469406322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:24 Heat of formation + Delta-G solvation = -20.155207 kcal Electronic energy + Delta-G solvation = -21927.448056 eV Core-core repulsion = 18507.696713 eV Total energy + Delta-G solvation = -3419.751343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63180 -40.73705 -38.93483 -36.53339 -35.37074 -34.21461 -33.35592 -31.69545 -30.99634 -29.71896 -27.54542 -26.17891 -24.89945 -24.10756 -21.66999 -21.27209 -19.22578 -18.82767 -18.37001 -18.01292 -17.42564 -16.99091 -16.61943 -16.30292 -15.96145 -15.74911 -15.63444 -14.83982 -14.80393 -14.66514 -13.99264 -13.74110 -13.45007 -13.17580 -12.99862 -12.79790 -12.37659 -12.34596 -12.23529 -12.21279 -11.98436 -11.29611 -11.16254 -10.72001 -10.64709 -10.45320 -10.31060 -9.95879 -9.67914 -8.29421 -6.44997 -0.80127 -0.31633 1.24946 1.40896 1.42538 1.49688 1.52396 1.89868 2.30973 2.36316 2.97833 3.09832 3.42538 3.54021 3.67022 3.70936 3.90896 4.04643 4.12510 4.29658 4.42947 4.44916 4.61643 4.78733 4.85232 4.96622 5.04790 5.08197 5.17918 5.33462 5.47065 5.67385 5.72839 5.82687 6.01833 6.40534 6.63006 6.97099 7.26011 7.33655 8.76434 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.004830 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.057161 B = 5795.993828 C = 6320.024876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.237 3.763 10 O -0.582 6.582 11 C -0.111 4.111 12 C 0.083 3.917 13 N -0.603 5.603 14 C 0.543 3.457 15 O -0.557 6.557 16 C 0.028 3.972 17 C -0.104 4.104 18 C -0.047 4.047 19 C -0.068 4.068 20 C 0.058 3.942 21 N -0.127 5.127 22 O -0.608 6.608 23 C 0.119 3.881 24 H 0.270 0.730 25 H 0.377 0.623 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.209 0.791 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.198 0.802 34 H 0.027 0.973 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -24.113 -3.512 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.597 4.597 8 H 0.089 0.911 9 C 0.196 3.804 10 O -0.390 6.390 11 C -0.149 4.149 12 C -0.037 4.037 13 N -0.337 5.337 14 C 0.330 3.670 15 O -0.434 6.434 16 C -0.099 4.099 17 C -0.123 4.123 18 C -0.072 4.072 19 C -0.086 4.086 20 C -0.089 4.089 21 N 0.191 4.809 22 O -0.663 6.663 23 C -0.004 4.004 24 H 0.079 0.921 25 H 0.227 0.773 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.225 0.775 31 H 0.243 0.757 32 H 0.247 0.753 33 H 0.215 0.785 34 H 0.045 0.955 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.319 -23.841 -2.809 24.588 hybrid contribution -0.738 2.747 1.065 3.037 sum 4.581 -21.094 -1.744 21.656 Atomic orbital electron populations 1.69736 1.07191 1.28580 1.50252 1.25828 0.95762 1.02940 0.93105 0.85546 0.78370 0.78452 0.78936 1.18650 1.21215 1.20202 1.21880 0.94147 0.91416 1.52279 0.91081 1.19667 0.86611 0.93947 0.80166 1.86051 1.51612 1.54578 1.46779 1.22895 0.96672 0.92987 1.02298 1.23328 0.93595 0.95843 0.90950 1.48614 1.50330 1.11878 1.22925 1.18060 0.80269 0.87575 0.81095 1.90868 1.45322 1.62679 1.44514 1.20804 1.05603 0.94725 0.88803 1.23544 0.94377 0.95094 0.99243 1.22695 0.92318 0.93500 0.98697 1.22853 0.92044 1.03137 0.90585 1.23584 0.99460 0.80658 1.05213 1.43350 1.20665 1.08205 1.08666 1.97697 1.80655 1.53770 1.34143 1.22702 0.99703 0.79130 0.98872 0.92086 0.77329 0.87442 0.89910 0.86108 0.87524 0.77486 0.75701 0.75268 0.78507 0.95486 0.94981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.78 10.96 21.45 0.24 -50.54 16 2 C 0.02 1.29 5.27 84.65 0.45 1.74 16 3 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.56 -28.94 8.11 25.60 0.21 -28.73 16 8 H 0.07 3.53 7.77 -2.91 -0.02 3.51 16 9 C 0.24 11.03 0.85 -10.35 -0.01 11.03 16 10 O -0.58 -27.78 13.07 -148.98 -1.95 -29.73 16 11 C -0.11 -3.72 6.26 32.16 0.20 -3.52 16 12 C 0.08 2.26 4.90 87.02 0.43 2.68 16 13 N -0.60 -25.05 3.33 -814.08 -2.71 -27.76 16 14 C 0.54 25.19 7.75 86.82 0.67 25.87 16 15 O -0.56 -33.78 15.25 18.08 0.28 -33.50 16 16 C 0.03 0.92 6.68 41.85 0.28 1.20 16 17 C -0.10 -1.66 8.29 22.61 0.19 -1.48 16 18 C -0.05 -0.18 10.16 22.44 0.23 0.04 16 19 C -0.07 -0.31 10.11 22.42 0.23 -0.09 16 20 C 0.06 1.13 10.69 84.75 0.91 2.03 16 21 N -0.13 -4.67 3.60 -184.90 -0.67 -5.33 16 22 O -0.61 -34.11 17.82 -16.86 -0.30 -34.41 16 23 C 0.12 6.06 5.38 86.73 0.47 6.53 16 24 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.38 19.37 7.23 -74.06 -0.54 18.83 16 26 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.08 2.73 8.04 -2.39 -0.02 2.71 16 28 H 0.12 2.14 6.14 -2.39 -0.01 2.13 16 29 H 0.11 2.31 7.20 -2.39 -0.02 2.29 16 30 H 0.21 2.49 3.42 -2.91 -0.01 2.48 16 31 H 0.23 -1.79 8.06 -2.91 -0.02 -1.82 16 32 H 0.23 -1.72 8.06 -2.91 -0.02 -1.74 16 33 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.03 1.57 7.82 -2.38 -0.02 1.55 16 35 H 0.03 1.82 8.00 -2.39 -0.02 1.80 16 Total: -1.00 -103.49 295.57 1.76 -101.73 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.60 Total: 17.67 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 4.24 Total: 17.30 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -3.14 Total: -83.63 kcal Atomic # 8 Polarization: -95.67 SS G_CDS: -1.97 Total: -97.64 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -103.49 1.76 -101.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.574 kcal (2) G-P(sol) polarization free energy of solvation -103.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds