Wall clock time and date at job start Tue Mar 31 2020 00:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00085 * 2 1 4 4 H 1.48500 * 109.47403 * 274.82135 * 3 2 1 5 5 H 1.48504 * 109.47368 * 34.82351 * 3 2 1 6 6 H 1.48498 * 109.47407 * 154.82064 * 3 2 1 7 7 C 1.37881 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 354.78622 * 7 2 1 9 9 C 1.50694 * 120.00155 * 174.78853 * 7 2 1 10 10 O 1.42907 * 110.88851 * 68.73425 * 9 7 2 11 11 C 1.55161 * 111.00775 * 304.85673 * 9 7 2 12 12 C 1.54323 * 102.94490 * 206.38616 * 11 9 7 13 13 N 1.47029 * 107.26962 * 22.19001 * 12 11 9 14 14 C 1.34774 * 125.64603 * 181.02683 * 13 12 11 15 15 O 1.21538 * 120.00224 * 185.11398 * 14 13 12 16 16 C 1.47978 * 120.00087 * 5.10866 * 14 13 12 17 17 C 1.39426 * 119.74135 * 352.20635 * 16 14 13 18 18 C 1.38460 * 119.06701 * 179.70280 * 17 16 14 19 19 C 1.38731 * 118.52909 * 0.56200 * 18 17 16 20 20 C 1.38398 * 119.39589 * 359.71853 * 19 18 17 21 21 N 1.31723 * 120.90024 * 359.97438 * 20 19 18 22 22 O 1.41600 * 119.20897 * 179.97438 * 21 20 19 23 23 C 1.47418 * 108.70492 * 1.28703 * 13 12 11 24 24 H 0.97000 * 120.00346 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99862 * 56.12121 * 10 9 7 26 26 H 1.08992 * 110.72081 * 88.01867 * 11 9 7 27 27 H 1.09008 * 110.86551 * 324.81916 * 11 9 7 28 28 H 1.09001 * 109.87969 * 262.77417 * 12 11 9 29 29 H 1.08994 * 109.88095 * 141.60477 * 12 11 9 30 30 H 1.08001 * 120.46344 * 0.02562 * 17 16 14 31 31 H 1.08001 * 120.73382 * 180.26020 * 18 17 16 32 32 H 1.08003 * 120.29748 * 179.74755 * 19 18 17 33 33 H 1.07998 * 119.55239 * 180.02562 * 20 19 18 34 34 H 1.08999 * 110.36710 * 94.47923 * 23 13 12 35 35 H 1.09001 * 110.36912 * 216.80524 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3947 2.1052 -1.3951 5 1 1.5013 2.6211 0.7995 6 1 3.5939 1.4129 0.5956 7 6 2.0045 -1.1941 -0.0005 8 1 1.4679 -2.1275 0.0840 9 6 3.5068 -1.1967 -0.1191 10 8 4.1118 -0.6579 1.0582 11 6 3.9663 -0.4242 -1.3838 12 6 5.3252 -1.0773 -1.7131 13 7 5.3321 -2.4088 -1.0895 14 6 6.3515 -3.2894 -1.1292 15 8 6.2135 -4.4006 -0.6566 16 6 7.6390 -2.9035 -1.7483 17 6 7.7423 -1.6927 -2.4319 18 6 8.9553 -1.3426 -3.0005 19 6 10.0226 -2.2202 -2.8774 20 6 9.8489 -3.4089 -2.1902 21 7 8.6861 -3.7160 -1.6529 22 8 8.5482 -4.9421 -0.9581 23 6 4.0368 -2.6235 -0.4191 24 1 -0.4851 0.8400 0.0004 25 1 3.8545 -1.1087 1.8741 26 1 4.0912 0.6360 -1.1639 27 1 3.2615 -0.5663 -2.2030 28 1 6.1355 -0.4728 -1.3055 29 1 5.4384 -1.1731 -2.7929 30 1 6.8897 -1.0347 -2.5121 31 1 9.0666 -0.4093 -3.5324 32 1 10.9805 -1.9777 -3.3134 33 1 10.6782 -4.0938 -2.0925 34 1 3.3512 -3.1542 -1.0796 35 1 4.1772 -3.1785 0.5085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469406324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:27 Heat of formation + Delta-G solvation = 29.852598 kcal Electronic energy + Delta-G solvation = -22000.224229 eV Core-core repulsion = 18582.641387 eV Total energy + Delta-G solvation = -3417.582841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67532 -39.50172 -37.51199 -35.26276 -34.31742 -32.58075 -32.36266 -30.46007 -29.77285 -28.64125 -26.13441 -24.96279 -23.92305 -22.74829 -20.54306 -19.85832 -17.96032 -17.57193 -17.30912 -17.15978 -16.07168 -15.59237 -15.29898 -15.05883 -14.88776 -14.67124 -14.54262 -13.58398 -13.34187 -13.22626 -12.86543 -12.70461 -12.26113 -12.14219 -11.48934 -11.39641 -11.33320 -11.19848 -10.67298 -10.46023 -10.16355 -9.90537 -9.80909 -9.10124 -9.00982 -8.79809 -8.75198 -8.52055 -8.19672 -6.31207 -4.43909 0.03515 0.39034 2.21395 2.53938 3.13708 3.18268 3.32948 3.37093 3.50248 4.10364 4.17809 4.23761 4.27184 4.30278 4.46630 4.87341 4.96103 4.96436 5.23421 5.28759 5.30744 5.43274 5.46442 5.54659 5.64711 5.97053 6.31109 6.39980 6.42524 6.49681 6.61469 6.96995 6.98585 7.34886 7.66877 8.10941 8.32482 8.66305 8.81479 9.30430 10.79201 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.005181 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.316285 B = 5403.310999 C = 5993.717527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.090 3.910 3 Si 0.870 3.130 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.225 1.225 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.218 3.782 10 O -0.574 6.574 11 C -0.128 4.128 12 C 0.086 3.914 13 N -0.601 5.601 14 C 0.562 3.438 15 O -0.477 6.477 16 C 0.061 3.939 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.107 4.107 20 C 0.060 3.940 21 N -0.091 5.091 22 O -0.498 6.498 23 C 0.097 3.903 24 H 0.268 0.732 25 H 0.368 0.632 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.199 0.801 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.079 0.921 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.671 4.300 -9.160 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.116 4.116 3 Si 0.697 3.303 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.148 1.148 7 C -0.591 4.591 8 H 0.099 0.901 9 C 0.177 3.823 10 O -0.381 6.381 11 C -0.166 4.166 12 C -0.036 4.036 13 N -0.337 5.337 14 C 0.347 3.653 15 O -0.348 6.348 16 C -0.068 4.068 17 C -0.146 4.146 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.087 4.087 21 N 0.232 4.768 22 O -0.558 6.558 23 C -0.024 4.024 24 H 0.078 0.922 25 H 0.216 0.784 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.215 0.785 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.202 0.798 34 H 0.098 0.902 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.707 3.735 -9.113 20.261 hybrid contribution 0.185 0.427 0.315 0.561 sum 17.892 4.162 -8.798 20.368 Atomic orbital electron populations 1.69922 1.06677 1.27694 1.47571 1.24954 0.94567 0.99568 0.92518 0.87165 0.82684 0.82424 0.78017 1.21052 1.22407 1.14792 1.21111 0.88178 0.95425 1.54351 0.90125 1.20149 0.92393 0.86537 0.83188 1.86448 1.73150 1.61455 1.17005 1.23040 0.94012 0.99897 0.99635 1.22584 1.00410 0.84266 0.96387 1.48343 1.15475 1.15940 1.53893 1.17034 0.81752 0.84959 0.81598 1.90929 1.80671 1.19071 1.44131 1.21018 0.91716 0.92091 1.01946 1.23668 1.01964 0.95045 0.93969 1.21848 0.91838 1.00407 0.97551 1.22020 1.01275 0.92270 0.97058 1.22719 0.90423 0.98799 0.96739 1.43300 1.03378 1.13385 1.16750 1.97743 1.95807 1.02347 1.59916 1.23180 0.81327 1.00628 0.97266 0.92226 0.78430 0.90358 0.88719 0.90769 0.90934 0.78522 0.82435 0.81780 0.79804 0.90239 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.96 55.43 0.77 -24.26 16 2 C 0.09 2.35 5.43 -17.82 -0.10 2.26 16 3 Si 0.87 19.55 24.09 -169.99 -4.10 15.46 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.23 -4.90 5.24 56.52 0.30 -4.60 16 7 C -0.55 -13.94 8.86 -34.44 -0.31 -14.25 16 8 H 0.08 2.24 8.04 -52.48 -0.42 1.81 16 9 C 0.22 4.55 0.71 -89.50 -0.06 4.48 16 10 O -0.57 -11.87 10.72 -35.23 -0.38 -12.25 16 11 C -0.13 -2.29 4.62 -24.89 -0.11 -2.41 16 12 C 0.09 1.22 4.86 -3.06 -0.01 1.21 16 13 N -0.60 -10.73 3.32 -176.35 -0.59 -11.31 16 14 C 0.56 11.03 7.80 -12.27 -0.10 10.94 16 15 O -0.48 -11.66 15.16 -17.69 -0.27 -11.93 16 16 C 0.06 0.95 6.70 -82.98 -0.56 0.39 16 17 C -0.13 -1.28 8.62 -39.06 -0.34 -1.62 16 18 C -0.09 -0.56 10.16 -39.32 -0.40 -0.96 16 19 C -0.11 -0.63 10.11 -39.34 -0.40 -1.03 16 20 C 0.06 0.62 10.68 -17.54 -0.19 0.43 16 21 N -0.09 -1.54 3.60 -9.79 -0.04 -1.57 16 22 O -0.50 -11.94 17.80 -34.49 -0.61 -12.55 16 23 C 0.10 1.93 6.08 -2.41 -0.01 1.92 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.37 6.82 9.06 45.56 0.41 7.24 16 26 H 0.08 1.41 4.83 -51.93 -0.25 1.16 16 27 H 0.09 1.68 8.04 -51.92 -0.42 1.26 16 28 H 0.07 0.91 6.66 -51.93 -0.35 0.57 16 29 H 0.07 0.77 6.79 -51.93 -0.35 0.42 16 30 H 0.20 1.70 2.75 -58.84 -0.16 1.53 16 31 H 0.16 0.36 8.06 -52.49 -0.42 -0.07 16 32 H 0.16 0.25 8.06 -52.48 -0.42 -0.18 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 35 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 287.51 15.07 4.33 4.33 Total: -1.00 -39.35 287.51 -6.34 -45.69 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.88 Total: 7.03 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.58 Total: 1.37 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.15 Total: -37.14 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.26 Total: -36.73 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.10 Total: 15.46 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -39.35 -6.34 -45.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.543 kcal (2) G-P(sol) polarization free energy of solvation -39.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds