Wall clock time and date at job start Tue Mar 31 2020 00:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86791 * 120.00085 * 2 1 4 4 H 1.48500 * 109.47403 * 274.82135 * 3 2 1 5 5 H 1.48504 * 109.47368 * 34.82351 * 3 2 1 6 6 H 1.48498 * 109.47407 * 154.82064 * 3 2 1 7 7 C 1.37881 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99881 * 354.78622 * 7 2 1 9 9 C 1.50694 * 120.00155 * 174.78853 * 7 2 1 10 10 O 1.42907 * 110.88851 * 68.73425 * 9 7 2 11 11 C 1.55161 * 111.00775 * 304.85673 * 9 7 2 12 12 C 1.54323 * 102.94490 * 206.38616 * 11 9 7 13 13 N 1.47029 * 107.26962 * 22.19001 * 12 11 9 14 14 C 1.34774 * 125.64603 * 181.02683 * 13 12 11 15 15 O 1.21538 * 120.00224 * 185.11398 * 14 13 12 16 16 C 1.47978 * 120.00087 * 5.10866 * 14 13 12 17 17 C 1.39426 * 119.74135 * 352.20635 * 16 14 13 18 18 C 1.38460 * 119.06701 * 179.70280 * 17 16 14 19 19 C 1.38731 * 118.52909 * 0.56200 * 18 17 16 20 20 C 1.38398 * 119.39589 * 359.71853 * 19 18 17 21 21 N 1.31723 * 120.90024 * 359.97438 * 20 19 18 22 22 O 1.41600 * 119.20897 * 179.97438 * 21 20 19 23 23 C 1.47418 * 108.70492 * 1.28703 * 13 12 11 24 24 H 0.97000 * 120.00346 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99862 * 56.12121 * 10 9 7 26 26 H 1.08992 * 110.72081 * 88.01867 * 11 9 7 27 27 H 1.09008 * 110.86551 * 324.81916 * 11 9 7 28 28 H 1.09001 * 109.87969 * 262.77417 * 12 11 9 29 29 H 1.08994 * 109.88095 * 141.60477 * 12 11 9 30 30 H 1.08001 * 120.46344 * 0.02562 * 17 16 14 31 31 H 1.08001 * 120.73382 * 180.26020 * 18 17 16 32 32 H 1.08003 * 120.29748 * 179.74755 * 19 18 17 33 33 H 1.07998 * 119.55239 * 180.02562 * 20 19 18 34 34 H 1.08999 * 110.36710 * 94.47923 * 23 13 12 35 35 H 1.09001 * 110.36912 * 216.80524 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3947 2.1052 -1.3951 5 1 1.5013 2.6211 0.7995 6 1 3.5939 1.4129 0.5956 7 6 2.0045 -1.1941 -0.0005 8 1 1.4679 -2.1275 0.0840 9 6 3.5068 -1.1967 -0.1191 10 8 4.1118 -0.6579 1.0582 11 6 3.9663 -0.4242 -1.3838 12 6 5.3252 -1.0773 -1.7131 13 7 5.3321 -2.4088 -1.0895 14 6 6.3515 -3.2894 -1.1292 15 8 6.2135 -4.4006 -0.6566 16 6 7.6390 -2.9035 -1.7483 17 6 7.7423 -1.6927 -2.4319 18 6 8.9553 -1.3426 -3.0005 19 6 10.0226 -2.2202 -2.8774 20 6 9.8489 -3.4089 -2.1902 21 7 8.6861 -3.7160 -1.6529 22 8 8.5482 -4.9421 -0.9581 23 6 4.0368 -2.6235 -0.4191 24 1 -0.4851 0.8400 0.0004 25 1 3.8545 -1.1087 1.8741 26 1 4.0912 0.6360 -1.1639 27 1 3.2615 -0.5663 -2.2030 28 1 6.1355 -0.4728 -1.3055 29 1 5.4384 -1.1731 -2.7929 30 1 6.8897 -1.0347 -2.5121 31 1 9.0666 -0.4093 -3.5324 32 1 10.9805 -1.9777 -3.3134 33 1 10.6782 -4.0938 -2.0925 34 1 3.3512 -3.1542 -1.0796 35 1 4.1772 -3.1785 0.5085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469406324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:27 Heat of formation + Delta-G solvation = -4.226583 kcal Electronic energy + Delta-G solvation = -22001.702013 eV Core-core repulsion = 18582.641387 eV Total energy + Delta-G solvation = -3419.060626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.66154 -40.87202 -39.06604 -36.62509 -35.38060 -34.52997 -33.41704 -31.90693 -31.00529 -30.11010 -27.68185 -26.13046 -24.93206 -24.02707 -21.88387 -21.40706 -19.46830 -18.93057 -18.34739 -18.08099 -17.32966 -16.98988 -16.65487 -16.43614 -16.18368 -15.79665 -15.66888 -15.05990 -14.89894 -14.72788 -14.23517 -14.02514 -13.70889 -13.11849 -13.08872 -12.86030 -12.62340 -12.38202 -12.16343 -12.00201 -11.78546 -11.27846 -10.89468 -10.78589 -10.72464 -10.43786 -10.42188 -9.95329 -9.67522 -8.34632 -6.52620 -0.80757 -0.32098 1.20452 1.39652 1.50478 1.52114 1.73901 1.85332 2.30939 2.41679 2.99500 3.03294 3.41504 3.46768 3.55361 3.66873 3.76583 3.87136 3.98074 4.13177 4.31879 4.36788 4.41297 4.71559 4.77945 4.84749 4.91785 5.00120 5.03350 5.06171 5.37683 5.50517 5.67114 5.81450 6.07320 6.30472 6.59296 6.91185 7.09016 7.27213 8.79857 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.005181 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.316285 B = 5403.310999 C = 5993.717527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.256 1.256 5 H -0.311 1.311 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.032 0.968 9 C 0.218 3.782 10 O -0.573 6.573 11 C -0.130 4.130 12 C 0.084 3.916 13 N -0.598 5.598 14 C 0.551 3.449 15 O -0.549 6.549 16 C 0.027 3.973 17 C -0.115 4.115 18 C -0.050 4.050 19 C -0.070 4.070 20 C 0.058 3.942 21 N -0.127 5.127 22 O -0.606 6.606 23 C 0.100 3.900 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.217 0.783 31 H 0.223 0.777 32 H 0.228 0.772 33 H 0.198 0.802 34 H 0.065 0.935 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.092 9.255 -12.603 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.164 4.164 3 Si 0.762 3.238 4 H -0.181 1.181 5 H -0.239 1.239 6 H -0.130 1.130 7 C -0.595 4.595 8 H 0.051 0.949 9 C 0.178 3.822 10 O -0.380 6.380 11 C -0.167 4.167 12 C -0.036 4.036 13 N -0.331 5.331 14 C 0.339 3.661 15 O -0.426 6.426 16 C -0.100 4.100 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.088 4.088 20 C -0.089 4.089 21 N 0.192 4.808 22 O -0.660 6.660 23 C -0.023 4.023 24 H 0.078 0.922 25 H 0.223 0.777 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.232 0.768 31 H 0.240 0.760 32 H 0.245 0.755 33 H 0.215 0.785 34 H 0.083 0.917 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.132 8.667 -12.554 26.880 hybrid contribution -1.123 -0.996 1.266 1.964 sum 21.009 7.671 -11.288 25.053 Atomic orbital electron populations 1.70075 1.08827 1.28725 1.49830 1.25862 0.95155 1.03535 0.91889 0.86114 0.81476 0.76910 0.79285 1.18119 1.23945 1.13035 1.21310 0.90827 0.93666 1.53690 0.94943 1.20011 0.89666 0.87820 0.84747 1.86394 1.72800 1.61500 1.17298 1.23015 0.96112 1.00255 0.97325 1.22988 0.99231 0.82040 0.99386 1.48330 1.14112 1.17314 1.53388 1.17853 0.83380 0.84130 0.80770 1.90881 1.82124 1.22155 1.47432 1.20790 0.89776 0.94639 1.04801 1.23916 1.04622 0.92203 0.92606 1.22694 0.89171 1.01691 0.93955 1.22841 1.03775 0.88917 0.93277 1.23549 0.88864 1.00997 0.95509 1.43336 1.05592 1.12655 1.19208 1.97695 1.96783 1.06697 1.64825 1.22888 0.82841 1.00101 0.96470 0.92173 0.77724 0.89172 0.88806 0.87254 0.85914 0.76756 0.75985 0.75521 0.78548 0.91712 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 13.96 21.45 0.30 -54.68 16 2 C 0.04 1.92 5.43 84.66 0.46 2.38 16 3 Si 0.94 39.32 24.09 68.60 1.65 40.97 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.31 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.21 -8.10 5.24 99.48 0.52 -7.58 16 7 C -0.56 -29.26 8.86 25.60 0.23 -29.04 16 8 H 0.03 1.95 8.04 -2.91 -0.02 1.93 16 9 C 0.22 9.12 0.71 -10.07 -0.01 9.11 16 10 O -0.57 -23.14 10.72 -148.98 -1.60 -24.74 16 11 C -0.13 -4.22 4.62 31.78 0.15 -4.07 16 12 C 0.08 2.02 4.86 86.73 0.42 2.44 16 13 N -0.60 -21.23 3.32 -830.14 -2.76 -23.99 16 14 C 0.55 22.57 7.80 86.83 0.68 23.24 16 15 O -0.55 -29.67 15.16 18.18 0.28 -29.39 16 16 C 0.03 0.81 6.70 41.86 0.28 1.09 16 17 C -0.12 -1.60 8.62 22.61 0.19 -1.40 16 18 C -0.05 -0.14 10.16 22.44 0.23 0.09 16 19 C -0.07 -0.25 10.11 22.43 0.23 -0.03 16 20 C 0.06 1.03 10.68 84.75 0.91 1.94 16 21 N -0.13 -4.30 3.60 -184.89 -0.67 -4.96 16 22 O -0.61 -31.95 17.80 -16.77 -0.30 -32.25 16 23 C 0.10 4.20 6.08 86.94 0.53 4.72 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.37 14.09 9.06 -74.05 -0.67 13.42 16 26 H 0.09 2.76 4.83 -2.39 -0.01 2.75 16 27 H 0.09 3.07 8.04 -2.38 -0.02 3.05 16 28 H 0.11 1.96 6.66 -2.39 -0.02 1.94 16 29 H 0.12 1.82 6.79 -2.39 -0.02 1.80 16 30 H 0.22 2.06 2.75 -8.88 -0.02 2.03 16 31 H 0.22 -1.89 8.06 -2.91 -0.02 -1.92 16 32 H 0.23 -1.82 8.06 -2.91 -0.02 -1.85 16 33 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.06 2.85 8.04 -2.39 -0.02 2.83 16 35 H 0.05 2.32 8.09 -2.39 -0.02 2.30 16 Total: -1.00 -104.55 287.51 1.47 -103.08 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.27 Total: 15.47 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.29 Total: 10.49 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.13 Total: -83.64 kcal Atomic # 8 Polarization: -84.76 SS G_CDS: -1.62 Total: -86.38 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.65 Total: 40.97 kcal Total: -104.55 1.47 -103.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.858 kcal (2) G-P(sol) polarization free energy of solvation -104.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds