Wall clock time and date at job start Tue Mar 31 2020 00:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37981 * 120.04960 * 2 1 4 4 C 1.38302 * 120.17765 * 180.30029 * 3 2 1 5 5 C 1.38609 * 120.27746 * 359.71416 * 4 3 2 6 6 F 1.35097 * 119.94650 * 180.02562 * 5 4 3 7 7 C 1.38150 * 120.09750 * 359.97438 * 5 4 3 8 8 C 1.39600 * 120.05141 * 179.71731 * 2 1 3 9 9 C 1.47734 * 120.13696 * 359.97438 * 8 2 1 10 10 O 1.21463 * 120.00121 * 353.50477 * 9 8 2 11 11 O 1.34710 * 119.99792 * 173.50424 * 9 8 2 12 12 C 1.45206 * 117.00113 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46767 * 329.99917 * 12 11 9 14 14 C 1.50695 * 109.47131 * 210.00120 * 12 11 9 15 15 H 1.08002 * 120.00363 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 12 11 17 17 N 1.31520 * 119.99831 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00237 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.46760 * 89.99990 * 18 16 14 20 20 H 1.48496 * 109.47526 * 210.00364 * 18 16 14 21 21 H 1.48502 * 109.46945 * 330.00515 * 18 16 14 22 22 C 1.52991 * 109.47279 * 89.99726 * 12 11 9 23 23 C 1.52998 * 117.50193 * 8.74752 * 22 12 11 24 24 C 1.53007 * 117.50060 * 300.09043 * 22 12 11 25 25 H 1.09001 * 109.46888 * 263.69601 * 1 2 3 26 26 H 1.09001 * 109.47043 * 23.69889 * 1 2 3 27 27 H 1.09002 * 109.46895 * 143.70001 * 1 2 3 28 28 H 1.07998 * 119.90741 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.85997 * 179.69490 * 4 3 2 30 30 H 1.07997 * 120.09140 * 180.02562 * 7 5 4 31 31 H 0.96997 * 119.99467 * 179.97438 * 17 16 14 32 32 H 1.08999 * 115.55176 * 154.42344 * 22 12 11 33 33 H 1.09006 * 117.49786 * 0.02562 * 23 22 12 34 34 H 1.08999 * 117.50258 * 145.01716 * 23 22 12 35 35 H 1.08997 * 117.49839 * 214.98169 * 24 22 12 36 36 H 1.09004 * 117.49712 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1944 0.0000 4 6 3.5810 1.1975 -0.0063 5 6 4.2825 0.0020 -0.0066 6 9 5.6334 0.0128 -0.0122 7 6 3.6023 -1.2004 -0.0002 8 6 2.2061 -1.2083 0.0060 9 6 1.4716 -2.4902 0.0129 10 8 0.2629 -2.4969 0.1324 11 8 2.1425 -3.6515 -0.1134 12 6 1.3561 -4.8721 -0.0988 13 1 0.4668 -4.7239 0.5138 14 6 2.1811 -5.9943 0.4766 15 1 3.1949 -5.8087 0.7994 16 6 1.6412 -7.2577 0.5918 17 7 2.3611 -8.2370 1.0944 18 14 -0.1129 -7.5783 0.0354 19 1 -0.1132 -7.9787 -1.3946 20 1 -0.7008 -8.6683 0.8548 21 1 -0.9192 -6.3426 0.2036 22 6 0.9383 -5.2267 -1.5272 23 6 1.5586 -4.4158 -2.6667 24 6 0.0901 -4.2063 -2.2891 25 1 -0.3633 -0.1128 1.0215 26 1 -0.3633 0.9410 -0.4131 27 1 -0.3633 -0.8282 -0.6084 28 1 1.6573 2.1292 -0.0004 29 1 4.1166 2.1353 -0.0112 30 1 4.1490 -2.1318 0.0000 31 1 1.9811 -9.1257 1.1758 32 1 0.7404 -6.2827 -1.7107 33 1 2.2648 -3.6298 -2.3987 34 1 1.7687 -4.9382 -3.5999 35 1 -0.6654 -4.5912 -2.9740 36 1 -0.1706 -3.2826 -1.7725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:30 Heat of formation + Delta-G solvation = -74.229566 kcal Electronic energy + Delta-G solvation = -21712.612556 eV Core-core repulsion = 18270.596412 eV Total energy + Delta-G solvation = -3442.016144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.93467 -40.45108 -38.81042 -36.75811 -35.13718 -32.80863 -32.34518 -31.62795 -28.77408 -26.87909 -24.43842 -22.94663 -22.10209 -21.74948 -20.90807 -19.62096 -18.04997 -16.99124 -16.80828 -16.21030 -15.96910 -15.74330 -15.63814 -15.32599 -14.66609 -14.00105 -13.88363 -13.64360 -13.56726 -13.03786 -12.81421 -12.19514 -12.13692 -11.89307 -11.79847 -11.70654 -11.52917 -11.39072 -10.98617 -10.80133 -10.25623 -9.99771 -9.77031 -9.65466 -9.36471 -9.27895 -8.86068 -8.71704 -8.65833 -6.26385 -4.29269 0.58695 1.03155 2.73209 3.15039 3.24382 3.29895 3.33940 3.60748 4.10962 4.23724 4.48393 4.52899 4.73637 4.78722 5.01625 5.02474 5.23114 5.49711 5.54614 5.63217 5.63929 5.69795 5.75828 5.81067 5.86852 5.99173 6.14472 6.16801 6.19300 6.41881 6.48914 6.66646 6.70975 6.72549 6.81882 7.22350 7.43518 8.13584 8.47899 8.80255 9.29882 10.85252 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.005505 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.481890 B = 5085.152589 C = 5650.654292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.109 4.109 4 C -0.122 4.122 5 C 0.077 3.923 6 F -0.137 7.137 7 C -0.091 4.091 8 C -0.093 4.093 9 C 0.497 3.503 10 O -0.503 6.503 11 O -0.332 6.332 12 C 0.227 3.773 13 H 0.054 0.946 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.082 3.918 17 N -0.886 5.886 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.256 1.256 22 C -0.165 4.165 23 C -0.170 4.170 24 C -0.206 4.206 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.270 0.730 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 17.561 -4.159 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.141 4.141 5 C 0.058 3.942 6 F -0.116 7.116 7 C -0.110 4.110 8 C -0.094 4.094 9 C 0.342 3.658 10 O -0.394 6.394 11 O -0.247 6.247 12 C 0.173 3.827 13 H 0.072 0.928 14 C -0.559 4.559 15 H 0.106 0.894 16 C -0.122 4.122 17 N -0.522 5.522 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.180 1.180 22 C -0.183 4.183 23 C -0.207 4.207 24 C -0.243 4.243 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.173 0.827 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.524 17.285 -4.065 17.822 hybrid contribution -0.581 -0.489 -0.367 0.843 sum -2.105 16.796 -4.433 17.499 Atomic orbital electron populations 1.21127 0.89430 1.03275 1.04054 1.20135 0.97404 0.91098 0.94658 1.20837 0.92956 0.97769 1.01162 1.21339 0.94952 0.97258 1.00560 1.17525 0.77199 0.94238 1.05240 1.91517 1.28592 1.97362 1.94115 1.21574 0.93891 0.98436 0.97128 1.19019 0.92532 0.91458 1.06391 1.20923 0.85963 0.85378 0.73513 1.90711 1.14955 1.87872 1.45884 1.86582 1.42249 1.14889 1.80977 1.20513 0.92328 0.78794 0.91034 0.92839 1.20694 1.02055 0.91277 1.41846 0.89352 1.24708 0.97624 0.95392 0.94450 1.69838 1.36830 1.01598 1.43941 0.87062 0.85389 0.79020 0.78511 1.20004 1.21454 1.17984 1.23432 1.02764 0.97081 0.95013 1.22760 0.95487 1.03573 0.98919 1.23258 0.93734 1.02705 1.04591 0.90237 0.92143 0.88452 0.84281 0.84343 0.82702 0.92008 0.87345 0.88941 0.89593 0.89890 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.72 36.01 0.31 -1.16 16 2 C -0.03 -0.42 5.91 -104.21 -0.62 -1.03 16 3 C -0.11 -1.09 9.66 -39.65 -0.38 -1.48 16 4 C -0.12 -1.25 10.02 -39.42 -0.39 -1.64 16 5 C 0.08 0.98 7.29 -39.48 -0.29 0.69 16 6 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 7 C -0.09 -1.33 9.59 -39.10 -0.38 -1.71 16 8 C -0.09 -1.44 5.87 -104.99 -0.62 -2.06 16 9 C 0.50 9.53 6.77 34.61 0.23 9.76 16 10 O -0.50 -10.08 10.44 -19.24 -0.20 -10.28 16 11 O -0.33 -7.27 7.65 -40.52 -0.31 -7.58 16 12 C 0.23 5.54 2.00 -27.89 -0.06 5.48 16 13 H 0.05 1.38 6.21 -51.93 -0.32 1.06 16 14 C -0.52 -14.60 9.48 -34.44 -0.33 -14.93 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 16 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 17 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 18 Si 0.87 21.15 24.48 -169.99 -4.16 16.99 16 19 H -0.27 -6.39 6.72 56.52 0.38 -6.01 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 22 C -0.16 -3.67 4.45 -90.62 -0.40 -4.07 16 23 C -0.17 -3.24 9.80 -26.70 -0.26 -3.50 16 24 C -0.21 -3.93 9.85 -26.69 -0.26 -4.19 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 27 H 0.10 1.39 5.86 -51.93 -0.30 1.08 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.16 2.34 7.63 -52.49 -0.40 1.94 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.11 2.54 4.40 -51.93 -0.23 2.31 16 33 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.10 1.95 5.36 -51.93 -0.28 1.67 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -29.91 300.36 -6.90 -36.82 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.04 Total: 4.41 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.53 Total: -17.64 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.51 Total: -17.85 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.16 Total: 16.99 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.91 -6.90 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.414 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds