Wall clock time and date at job start Tue Mar 31 2020 00:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37981 * 120.04960 * 2 1 4 4 C 1.38302 * 120.17765 * 180.30029 * 3 2 1 5 5 C 1.38609 * 120.27746 * 359.71416 * 4 3 2 6 6 F 1.35097 * 119.94650 * 180.02562 * 5 4 3 7 7 C 1.38150 * 120.09750 * 359.97438 * 5 4 3 8 8 C 1.39600 * 120.05141 * 179.71731 * 2 1 3 9 9 C 1.47734 * 120.13696 * 359.97438 * 8 2 1 10 10 O 1.21463 * 120.00121 * 353.50477 * 9 8 2 11 11 O 1.34710 * 119.99792 * 173.50424 * 9 8 2 12 12 C 1.45206 * 117.00113 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46767 * 329.99917 * 12 11 9 14 14 C 1.50695 * 109.47131 * 210.00120 * 12 11 9 15 15 H 1.08002 * 120.00363 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 12 11 17 17 N 1.31520 * 119.99831 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00237 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.46760 * 89.99990 * 18 16 14 20 20 H 1.48496 * 109.47526 * 210.00364 * 18 16 14 21 21 H 1.48502 * 109.46945 * 330.00515 * 18 16 14 22 22 C 1.52991 * 109.47279 * 89.99726 * 12 11 9 23 23 C 1.52998 * 117.50193 * 8.74752 * 22 12 11 24 24 C 1.53007 * 117.50060 * 300.09043 * 22 12 11 25 25 H 1.09001 * 109.46888 * 263.69601 * 1 2 3 26 26 H 1.09001 * 109.47043 * 23.69889 * 1 2 3 27 27 H 1.09002 * 109.46895 * 143.70001 * 1 2 3 28 28 H 1.07998 * 119.90741 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.85997 * 179.69490 * 4 3 2 30 30 H 1.07997 * 120.09140 * 180.02562 * 7 5 4 31 31 H 0.96997 * 119.99467 * 179.97438 * 17 16 14 32 32 H 1.08999 * 115.55176 * 154.42344 * 22 12 11 33 33 H 1.09006 * 117.49786 * 0.02562 * 23 22 12 34 34 H 1.08999 * 117.50258 * 145.01716 * 23 22 12 35 35 H 1.08997 * 117.49839 * 214.98169 * 24 22 12 36 36 H 1.09004 * 117.49712 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1944 0.0000 4 6 3.5810 1.1975 -0.0063 5 6 4.2825 0.0020 -0.0066 6 9 5.6334 0.0128 -0.0122 7 6 3.6023 -1.2004 -0.0002 8 6 2.2061 -1.2083 0.0060 9 6 1.4716 -2.4902 0.0129 10 8 0.2629 -2.4969 0.1324 11 8 2.1425 -3.6515 -0.1134 12 6 1.3561 -4.8721 -0.0988 13 1 0.4668 -4.7239 0.5138 14 6 2.1811 -5.9943 0.4766 15 1 3.1949 -5.8087 0.7994 16 6 1.6412 -7.2577 0.5918 17 7 2.3611 -8.2370 1.0944 18 14 -0.1129 -7.5783 0.0354 19 1 -0.1132 -7.9787 -1.3946 20 1 -0.7008 -8.6683 0.8548 21 1 -0.9192 -6.3426 0.2036 22 6 0.9383 -5.2267 -1.5272 23 6 1.5586 -4.4158 -2.6667 24 6 0.0901 -4.2063 -2.2891 25 1 -0.3633 -0.1128 1.0215 26 1 -0.3633 0.9410 -0.4131 27 1 -0.3633 -0.8282 -0.6084 28 1 1.6573 2.1292 -0.0004 29 1 4.1166 2.1353 -0.0112 30 1 4.1490 -2.1318 0.0000 31 1 1.9811 -9.1257 1.1758 32 1 0.7404 -6.2827 -1.7107 33 1 2.2648 -3.6298 -2.3987 34 1 1.7687 -4.9382 -3.5999 35 1 -0.6654 -4.5912 -2.9740 36 1 -0.1706 -3.2826 -1.7725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:29 Heat of formation + Delta-G solvation = -90.757856 kcal Electronic energy + Delta-G solvation = -21713.329276 eV Core-core repulsion = 18270.596412 eV Total energy + Delta-G solvation = -3442.732865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94987 -41.89500 -40.02176 -38.30263 -36.74997 -34.93738 -33.34718 -32.70697 -30.70440 -27.90943 -25.72847 -24.72025 -23.45064 -23.15146 -22.18243 -21.25966 -19.47579 -18.71509 -18.27282 -17.87662 -17.34500 -16.93515 -16.68675 -16.57549 -16.14249 -15.63156 -15.09906 -14.84735 -14.79962 -14.54458 -14.28983 -13.85545 -13.49823 -13.43900 -13.10450 -12.83628 -12.79239 -12.69408 -12.48545 -12.45646 -12.16220 -11.89978 -11.49018 -11.22799 -10.99147 -10.79789 -10.68318 -10.26829 -9.65465 -8.45978 -6.54777 -0.48882 0.05499 1.21949 1.29841 1.41840 1.44653 1.78556 2.19422 2.50710 2.80982 2.95453 3.09815 3.54183 3.71882 3.83344 3.85370 3.97871 3.99127 4.08081 4.14433 4.42986 4.56049 4.69256 4.72455 4.78888 4.82765 4.90475 4.91535 4.97399 5.05886 5.08134 5.19568 5.25269 5.34294 5.40030 5.62786 5.77050 6.11231 6.48536 6.80795 7.09809 8.69812 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.005505 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.481890 B = 5085.152589 C = 5650.654292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.091 4.091 4 C -0.099 4.099 5 C 0.068 3.932 6 F -0.143 7.143 7 C -0.109 4.109 8 C -0.119 4.119 9 C 0.492 3.508 10 O -0.516 6.516 11 O -0.348 6.348 12 C 0.235 3.765 13 H 0.035 0.965 14 C -0.536 4.536 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.253 1.253 20 H -0.282 1.282 21 H -0.251 1.251 22 C -0.199 4.199 23 C -0.157 4.157 24 C -0.183 4.183 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.187 0.813 29 H 0.179 0.821 30 H 0.132 0.868 31 H 0.275 0.725 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 20.860 -5.749 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.108 4.108 4 C -0.118 4.118 5 C 0.049 3.951 6 F -0.121 7.121 7 C -0.128 4.128 8 C -0.120 4.120 9 C 0.339 3.661 10 O -0.408 6.408 11 O -0.264 6.264 12 C 0.181 3.819 13 H 0.053 0.947 14 C -0.573 4.573 15 H 0.062 0.938 16 C -0.167 4.167 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.178 1.178 20 H -0.209 1.209 21 H -0.175 1.175 22 C -0.218 4.218 23 C -0.193 4.193 24 C -0.219 4.219 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.204 0.796 29 H 0.196 0.804 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.095 20.606 -5.662 21.593 hybrid contribution 0.029 -1.360 0.192 1.373 sum -3.066 19.247 -5.470 20.243 Atomic orbital electron populations 1.21106 0.88830 1.04270 1.03496 1.20404 0.97969 0.90954 0.93969 1.21319 0.92871 0.98164 0.98476 1.21798 0.95179 0.97473 0.97300 1.17673 0.77074 0.94558 1.05807 1.91505 1.29003 1.97385 1.94227 1.21429 0.93800 0.98789 0.98761 1.18912 0.92725 0.90526 1.09884 1.21596 0.86202 0.85528 0.72782 1.90693 1.15461 1.87998 1.46625 1.86565 1.42612 1.15366 1.81825 1.20047 0.90781 0.78799 0.92305 0.94695 1.20881 1.00738 0.93273 1.42415 0.93767 1.25534 1.02101 0.94863 0.94209 1.69968 1.39120 1.02311 1.45414 0.86014 0.79744 0.78973 0.79125 1.17822 1.20885 1.17468 1.23171 1.06749 0.97414 0.94426 1.22865 0.95707 1.02454 0.98318 1.23306 0.94291 1.00998 1.03338 0.90708 0.88292 0.91049 0.79626 0.80370 0.84970 0.91562 0.88270 0.89332 0.87096 0.87036 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.72 71.24 0.62 -1.99 16 2 C -0.03 -0.75 5.91 -19.60 -0.12 -0.87 16 3 C -0.09 -1.38 9.66 22.22 0.21 -1.16 16 4 C -0.10 -1.59 10.02 22.37 0.22 -1.37 16 5 C 0.07 1.63 7.29 22.34 0.16 1.79 16 6 F -0.14 -3.62 17.26 44.97 0.78 -2.85 16 7 C -0.11 -3.25 9.59 22.58 0.22 -3.04 16 8 C -0.12 -3.73 5.87 -20.10 -0.12 -3.84 16 9 C 0.49 19.52 6.77 70.33 0.48 19.99 16 10 O -0.52 -21.10 10.44 19.95 0.21 -20.89 16 11 O -0.35 -16.13 7.65 -56.20 -0.43 -16.56 16 12 C 0.23 11.94 2.00 29.84 0.06 11.99 16 13 H 0.04 1.88 6.21 -2.39 -0.01 1.87 16 14 C -0.54 -31.87 9.48 25.60 0.24 -31.63 16 15 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 16 C 0.03 1.92 5.44 84.65 0.46 2.38 16 17 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 18 Si 0.94 44.46 24.48 68.60 1.68 46.14 16 19 H -0.25 -11.12 6.72 99.48 0.67 -10.45 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 22 C -0.20 -8.87 4.45 -10.80 -0.05 -8.91 16 23 C -0.16 -5.79 9.80 30.62 0.30 -5.49 16 24 C -0.18 -6.64 9.85 30.62 0.30 -6.33 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.10 1.34 8.04 -2.39 -0.02 1.32 16 27 H 0.07 1.95 5.86 -2.39 -0.01 1.94 16 28 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.13 4.42 7.63 -2.91 -0.02 4.40 16 31 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.10 4.57 4.40 -2.39 -0.01 4.56 16 33 H 0.09 3.33 6.91 -2.38 -0.02 3.31 16 34 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.10 3.63 5.36 -2.39 -0.01 3.61 16 Total: -1.00 -70.00 300.36 6.55 -63.45 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.02 Total: 16.36 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.00 Total: -28.47 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.30 Total: -57.18 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.22 Total: -37.45 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.68 Total: 46.14 kcal Total: -70.00 6.55 -63.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.308 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds