Wall clock time and date at job start Tue Mar 31 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.91036 * 2 1 4 4 C 1.38565 * 120.27876 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.94995 * 180.02562 * 4 3 2 6 6 C 1.38198 * 120.09834 * 359.97438 * 4 3 2 7 7 C 1.39588 * 119.81651 * 0.02562 * 6 4 3 8 8 C 1.47729 * 120.13191 * 179.97438 * 7 6 4 9 9 O 1.21476 * 119.99885 * 180.02562 * 8 7 6 10 10 O 1.34713 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45204 * 116.99734 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47352 * 29.99817 * 11 10 8 13 13 C 1.50699 * 109.46763 * 149.99990 * 11 10 8 14 14 H 1.07999 * 120.00347 * 34.94592 * 13 11 10 15 15 C 1.37879 * 119.99811 * 214.94531 * 13 11 10 16 16 N 1.31516 * 119.99960 * 184.80643 * 15 13 11 17 17 Si 1.86800 * 119.99678 * 4.80452 * 15 13 11 18 18 H 1.48500 * 109.47063 * 84.69113 * 17 15 13 19 19 H 1.48509 * 109.47014 * 204.68230 * 17 15 13 20 20 H 1.48492 * 109.47455 * 324.68325 * 17 15 13 21 21 C 1.53005 * 109.46649 * 269.99578 * 11 10 8 22 22 C 1.52996 * 117.50184 * 351.85826 * 21 11 10 23 23 C 1.52992 * 117.49937 * 60.52071 * 21 11 10 24 24 C 1.37932 * 119.91336 * 180.27695 * 2 1 3 25 25 H 1.08999 * 109.46871 * 89.99978 * 1 2 3 26 26 H 1.08999 * 109.47207 * 209.99832 * 1 2 3 27 27 H 1.08998 * 109.47156 * 330.00335 * 1 2 3 28 28 H 1.07997 * 119.86338 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.09269 * 180.02562 * 6 4 3 30 30 H 0.97003 * 119.99404 * 180.02562 * 16 15 13 31 31 H 1.09003 * 115.54413 * 206.18689 * 21 11 10 32 32 H 1.09003 * 117.50192 * 215.00558 * 22 21 11 33 33 H 1.09009 * 117.49828 * 0.02562 * 22 21 11 34 34 H 1.09000 * 117.50025 * 359.97438 * 23 21 11 35 35 H 1.09000 * 117.50110 * 144.97566 * 23 21 11 36 36 H 1.07997 * 120.04749 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1993 0.0000 4 6 3.5825 1.2082 0.0005 5 9 4.2494 2.3830 0.0011 6 6 4.2832 0.0170 0.0016 7 6 3.5912 -1.1953 0.0016 8 6 4.3333 -2.4727 0.0022 9 8 3.7286 -3.5263 0.0017 10 8 5.6804 -2.4692 0.0032 11 6 6.3429 -3.7613 0.0032 12 1 5.7172 -4.4904 -0.5114 13 6 7.6675 -3.6465 -0.7062 14 1 8.2474 -2.7392 -0.6237 15 6 8.1391 -4.6999 -1.4605 16 7 9.3361 -4.6371 -2.0018 17 14 7.0779 -6.2162 -1.7135 18 1 6.1548 -5.9896 -2.8545 19 1 7.9463 -7.3853 -2.0043 20 1 6.2891 -6.4794 -0.4833 21 6 6.5745 -4.2156 1.4457 22 6 6.2743 -3.2109 2.5597 23 6 5.3428 -4.4042 2.3334 24 6 2.1948 -1.1956 -0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6532 2.1324 0.0004 29 1 5.3631 0.0241 0.0024 30 1 9.6677 -5.3781 -2.5328 31 1 7.4117 -4.8975 1.5951 32 1 6.9139 -3.2316 3.4421 33 1 5.9113 -2.2261 2.2650 34 1 4.3674 -4.2042 1.8898 35 1 5.3694 -5.2103 3.0666 36 1 1.6542 -2.1305 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518002916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:00 Heat of formation + Delta-G solvation = -86.597519 kcal Electronic energy + Delta-G solvation = -21372.232460 eV Core-core repulsion = 17929.680001 eV Total energy + Delta-G solvation = -3442.552459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.95422 -40.25667 -38.85629 -36.65679 -34.97555 -33.10839 -32.77296 -30.88421 -28.78410 -27.24702 -24.67260 -22.87635 -21.99456 -21.77224 -20.72093 -19.20551 -17.86248 -16.93175 -16.87457 -16.27782 -16.22200 -15.88614 -15.65698 -15.48678 -14.45358 -13.99517 -13.82485 -13.59326 -13.49277 -13.19698 -12.81087 -12.36463 -12.11646 -11.90667 -11.79791 -11.64331 -11.55492 -11.37338 -11.02331 -10.82204 -10.25867 -10.11032 -9.84541 -9.81827 -9.29256 -9.11022 -8.84316 -8.80171 -8.73587 -6.31840 -4.36604 0.59863 1.03249 2.74177 3.16765 3.27310 3.30648 3.34458 3.66510 4.05885 4.23241 4.47919 4.54548 4.70418 4.93860 4.99034 5.03970 5.17321 5.30046 5.35703 5.53039 5.57680 5.69883 5.72330 5.73481 5.89051 5.91232 6.14308 6.18485 6.21864 6.36071 6.45104 6.68448 6.73656 6.76575 6.93206 7.22598 7.43491 8.15219 8.49912 8.79009 9.26424 10.79025 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.005119 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.412399 B = 5468.517156 C = 5701.060082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.131 4.131 4 C 0.090 3.910 5 F -0.136 7.136 6 C -0.102 4.102 7 C -0.081 4.081 8 C 0.495 3.505 9 O -0.512 6.512 10 O -0.336 6.336 11 C 0.216 3.784 12 H 0.055 0.945 13 C -0.515 4.515 14 H 0.087 0.913 15 C 0.085 3.915 16 N -0.879 5.879 17 Si 0.865 3.135 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.256 1.256 21 C -0.142 4.142 22 C -0.178 4.178 23 C -0.209 4.209 24 C -0.072 4.072 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 8.837 5.205 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.149 4.149 4 C 0.071 3.929 5 F -0.115 7.115 6 C -0.121 4.121 7 C -0.083 4.083 8 C 0.340 3.660 9 O -0.404 6.404 10 O -0.252 6.252 11 C 0.163 3.837 12 H 0.072 0.928 13 C -0.552 4.552 14 H 0.105 0.895 15 C -0.120 4.120 16 N -0.515 5.515 17 Si 0.690 3.310 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.181 1.181 21 C -0.161 4.161 22 C -0.215 4.215 23 C -0.246 4.246 24 C -0.091 4.091 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.173 0.827 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.177 8.444 5.086 18.097 hybrid contribution -0.175 -0.731 -0.185 0.774 sum -15.352 7.714 4.900 17.866 Atomic orbital electron populations 1.20800 0.89883 1.03325 1.02908 1.19641 0.96667 0.91647 0.99388 1.21202 0.92240 0.99387 1.02116 1.17512 0.90087 0.81238 1.04038 1.91520 1.80729 1.45217 1.94007 1.21577 1.02304 0.90078 0.98156 1.19223 0.93232 0.91417 1.04402 1.21018 0.83391 0.88399 0.73234 1.90745 1.70201 1.33036 1.46381 1.86742 1.17265 1.39963 1.81210 1.20529 0.92503 0.78747 0.91900 0.92751 1.20685 1.00234 1.03978 1.30306 0.89474 1.24885 0.95031 0.98209 0.93889 1.69851 1.16612 1.32562 1.32435 0.87007 0.80928 0.82798 0.80226 1.19518 1.20642 1.18059 1.23248 0.98198 1.01828 0.92791 1.22791 1.03484 0.94819 1.00368 1.23262 0.96659 1.00409 1.04277 1.21242 0.92301 0.98850 0.96676 0.90604 0.90862 0.91131 0.84397 0.82695 0.91881 0.86955 0.89679 0.89196 0.88308 0.89897 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.00 36.00 0.36 -0.45 16 2 C -0.07 -0.77 5.87 -104.69 -0.61 -1.39 16 3 C -0.13 -1.39 9.67 -39.42 -0.38 -1.77 16 4 C 0.09 1.17 7.29 -39.48 -0.29 0.88 16 5 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 6 C -0.10 -1.52 9.60 -39.09 -0.38 -1.89 16 7 C -0.08 -1.30 5.87 -104.99 -0.62 -1.92 16 8 C 0.50 9.91 6.84 34.61 0.24 10.15 16 9 O -0.51 -11.05 13.42 -19.25 -0.26 -11.31 16 10 O -0.34 -7.54 7.64 -40.53 -0.31 -7.85 16 11 C 0.22 5.30 2.07 -27.88 -0.06 5.25 16 12 H 0.05 1.40 4.32 -51.93 -0.22 1.18 16 13 C -0.52 -14.33 9.22 -34.44 -0.32 -14.65 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 16 N -0.88 -25.76 13.96 55.43 0.77 -24.99 16 17 Si 0.86 21.08 26.98 -169.99 -4.59 16.49 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -6.12 6.83 56.52 0.39 -5.73 16 21 C -0.14 -3.12 5.69 -90.62 -0.52 -3.64 16 22 C -0.18 -3.35 9.79 -26.70 -0.26 -3.61 16 23 C -0.21 -4.02 9.86 -26.70 -0.26 -4.29 16 24 C -0.07 -0.96 9.24 -39.17 -0.36 -1.32 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.16 2.37 7.61 -52.49 -0.40 1.97 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.11 2.50 8.10 -51.93 -0.42 2.08 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.70 6.88 -51.92 -0.36 1.34 16 34 H 0.10 1.99 5.38 -51.93 -0.28 1.71 16 35 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.14 1.81 7.65 -52.49 -0.40 1.41 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -30.14 311.77 -7.38 -37.52 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.19 Total: 3.57 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -3.55 Total: -16.36 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.77 Total: -24.99 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.57 Total: -19.16 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.14 -7.38 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518002916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.078 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds