Wall clock time and date at job start Tue Mar 31 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.91036 * 2 1 4 4 C 1.38565 * 120.27876 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.94995 * 180.02562 * 4 3 2 6 6 C 1.38198 * 120.09834 * 359.97438 * 4 3 2 7 7 C 1.39588 * 119.81651 * 0.02562 * 6 4 3 8 8 C 1.47729 * 120.13191 * 179.97438 * 7 6 4 9 9 O 1.21476 * 119.99885 * 180.02562 * 8 7 6 10 10 O 1.34713 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45204 * 116.99734 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47352 * 29.99817 * 11 10 8 13 13 C 1.50699 * 109.46763 * 149.99990 * 11 10 8 14 14 H 1.07999 * 120.00347 * 34.94592 * 13 11 10 15 15 C 1.37879 * 119.99811 * 214.94531 * 13 11 10 16 16 N 1.31516 * 119.99960 * 184.80643 * 15 13 11 17 17 Si 1.86800 * 119.99678 * 4.80452 * 15 13 11 18 18 H 1.48500 * 109.47063 * 84.69113 * 17 15 13 19 19 H 1.48509 * 109.47014 * 204.68230 * 17 15 13 20 20 H 1.48492 * 109.47455 * 324.68325 * 17 15 13 21 21 C 1.53005 * 109.46649 * 269.99578 * 11 10 8 22 22 C 1.52996 * 117.50184 * 351.85826 * 21 11 10 23 23 C 1.52992 * 117.49937 * 60.52071 * 21 11 10 24 24 C 1.37932 * 119.91336 * 180.27695 * 2 1 3 25 25 H 1.08999 * 109.46871 * 89.99978 * 1 2 3 26 26 H 1.08999 * 109.47207 * 209.99832 * 1 2 3 27 27 H 1.08998 * 109.47156 * 330.00335 * 1 2 3 28 28 H 1.07997 * 119.86338 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.09269 * 180.02562 * 6 4 3 30 30 H 0.97003 * 119.99404 * 180.02562 * 16 15 13 31 31 H 1.09003 * 115.54413 * 206.18689 * 21 11 10 32 32 H 1.09003 * 117.50192 * 215.00558 * 22 21 11 33 33 H 1.09009 * 117.49828 * 0.02562 * 22 21 11 34 34 H 1.09000 * 117.50025 * 359.97438 * 23 21 11 35 35 H 1.09000 * 117.50110 * 144.97566 * 23 21 11 36 36 H 1.07997 * 120.04749 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1993 0.0000 4 6 3.5825 1.2082 0.0005 5 9 4.2494 2.3830 0.0011 6 6 4.2832 0.0170 0.0016 7 6 3.5912 -1.1953 0.0016 8 6 4.3333 -2.4727 0.0022 9 8 3.7286 -3.5263 0.0017 10 8 5.6804 -2.4692 0.0032 11 6 6.3429 -3.7613 0.0032 12 1 5.7172 -4.4904 -0.5114 13 6 7.6675 -3.6465 -0.7062 14 1 8.2474 -2.7392 -0.6237 15 6 8.1391 -4.6999 -1.4605 16 7 9.3361 -4.6371 -2.0018 17 14 7.0779 -6.2162 -1.7135 18 1 6.1548 -5.9896 -2.8545 19 1 7.9463 -7.3853 -2.0043 20 1 6.2891 -6.4794 -0.4833 21 6 6.5745 -4.2156 1.4457 22 6 6.2743 -3.2109 2.5597 23 6 5.3428 -4.4042 2.3334 24 6 2.1948 -1.1956 -0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6532 2.1324 0.0004 29 1 5.3631 0.0241 0.0024 30 1 9.6677 -5.3781 -2.5328 31 1 7.4117 -4.8975 1.5951 32 1 6.9139 -3.2316 3.4421 33 1 5.9113 -2.2261 2.2650 34 1 4.3674 -4.2042 1.8898 35 1 5.3694 -5.2103 3.0666 36 1 1.6542 -2.1305 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518002916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:59 Heat of formation + Delta-G solvation = -102.211983 kcal Electronic energy + Delta-G solvation = -21372.909554 eV Core-core repulsion = 17929.680001 eV Total energy + Delta-G solvation = -3443.229553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99196 -41.78509 -40.04515 -38.27686 -36.65087 -34.97225 -33.99750 -31.96103 -30.71712 -28.04972 -26.09358 -24.72166 -23.31255 -22.99593 -22.15796 -20.88896 -19.50211 -18.63517 -18.28103 -17.88842 -17.29138 -17.15269 -16.96166 -16.71031 -16.12917 -15.71626 -14.96930 -14.84540 -14.50976 -14.43467 -14.32994 -13.87548 -13.47320 -13.32809 -13.08293 -12.97909 -12.76834 -12.70697 -12.57205 -12.37089 -12.09702 -11.96569 -11.63136 -11.49852 -11.09812 -10.81647 -10.63818 -10.12588 -9.80291 -8.49083 -6.58881 -0.53218 0.02105 1.23752 1.27335 1.39241 1.40379 1.76374 2.18460 2.49145 2.81956 2.96395 3.06334 3.51649 3.68813 3.92660 3.96663 3.97841 4.05619 4.08464 4.11033 4.34776 4.54005 4.63905 4.71819 4.78608 4.80821 4.88278 4.92342 5.01541 5.10933 5.15789 5.23348 5.26806 5.32781 5.41253 5.54967 5.71693 6.10664 6.49530 6.78495 7.08452 8.66167 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.005119 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.412399 B = 5468.517156 C = 5701.060082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.109 4.109 4 C 0.085 3.915 5 F -0.139 7.139 6 C -0.117 4.117 7 C -0.105 4.105 8 C 0.493 3.507 9 O -0.532 6.532 10 O -0.349 6.349 11 C 0.222 3.778 12 H 0.041 0.959 13 C -0.527 4.527 14 H 0.047 0.953 15 C 0.039 3.961 16 N -0.921 5.921 17 Si 0.925 3.075 18 H -0.269 1.269 19 H -0.266 1.266 20 H -0.248 1.248 21 C -0.176 4.176 22 C -0.162 4.162 23 C -0.189 4.189 24 C -0.072 4.072 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.137 0.863 30 H 0.276 0.724 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.617 9.436 6.270 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.128 4.128 4 C 0.066 3.934 5 F -0.118 7.118 6 C -0.136 4.136 7 C -0.107 4.107 8 C 0.339 3.661 9 O -0.425 6.425 10 O -0.265 6.265 11 C 0.168 3.832 12 H 0.059 0.941 13 C -0.564 4.564 14 H 0.065 0.935 15 C -0.163 4.163 16 N -0.559 5.559 17 Si 0.747 3.253 18 H -0.194 1.194 19 H -0.191 1.191 20 H -0.172 1.172 21 C -0.195 4.195 22 C -0.199 4.199 23 C -0.226 4.226 24 C -0.090 4.090 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.194 0.806 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.557 9.059 6.160 21.550 hybrid contribution 0.800 -0.736 -0.506 1.199 sum -17.758 8.323 5.654 20.410 Atomic orbital electron populations 1.20928 0.86704 1.04928 1.04258 1.20043 0.98631 0.90311 0.96993 1.21629 0.91020 1.01063 0.99060 1.17592 0.91077 0.80342 1.04427 1.91515 1.81065 1.45102 1.94082 1.21440 1.01673 0.90921 0.99563 1.19024 0.94155 0.89516 1.07960 1.21663 0.82274 0.89907 0.72215 1.90711 1.70081 1.34130 1.47528 1.86686 1.19213 1.38686 1.81959 1.20226 0.90609 0.79143 0.93210 0.94107 1.20806 1.01791 1.02682 1.31106 0.93486 1.25607 0.96034 1.01115 0.93498 1.69958 1.18269 1.33972 1.33713 0.86064 0.79428 0.79505 0.80302 1.19408 1.19054 1.17184 1.23031 1.00081 1.04196 0.92199 1.22880 1.03111 0.94250 0.99610 1.23278 0.94947 1.01176 1.03153 1.21417 0.90932 1.00410 0.96223 0.89185 0.90171 0.88745 0.80600 0.84545 0.91399 0.87634 0.87002 0.89684 0.89230 0.87047 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.00 71.23 0.71 -0.35 16 2 C -0.06 -1.04 5.87 -19.91 -0.12 -1.16 16 3 C -0.11 -1.92 9.67 22.38 0.22 -1.70 16 4 C 0.08 2.07 7.29 22.34 0.16 2.23 16 5 F -0.14 -3.52 17.26 44.97 0.78 -2.74 16 6 C -0.12 -3.52 9.60 22.59 0.22 -3.30 16 7 C -0.11 -3.38 5.87 -20.10 -0.12 -3.49 16 8 C 0.49 20.19 6.84 70.33 0.48 20.67 16 9 O -0.53 -23.18 13.42 19.91 0.27 -22.91 16 10 O -0.35 -16.37 7.64 -56.22 -0.43 -16.80 16 11 C 0.22 11.23 2.07 29.85 0.06 11.29 16 12 H 0.04 2.16 4.32 -2.39 -0.01 2.15 16 13 C -0.53 -30.84 9.22 25.60 0.24 -30.60 16 14 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 15 C 0.04 2.24 5.47 84.65 0.46 2.71 16 16 N -0.92 -56.04 13.96 21.45 0.30 -55.74 16 17 Si 0.92 44.32 26.98 68.60 1.85 46.17 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.25 -11.48 6.83 99.48 0.68 -10.80 16 21 C -0.18 -7.80 5.69 -10.80 -0.06 -7.87 16 22 C -0.16 -5.96 9.79 30.62 0.30 -5.66 16 23 C -0.19 -6.98 9.86 30.62 0.30 -6.68 16 24 C -0.07 -1.77 9.24 22.54 0.21 -1.56 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 28 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.14 4.50 7.61 -2.91 -0.02 4.48 16 30 H 0.28 15.52 8.31 -92.71 -0.77 14.74 16 31 H 0.11 4.75 8.10 -2.39 -0.02 4.73 16 32 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.08 3.21 6.88 -2.38 -0.02 3.20 16 34 H 0.09 3.52 5.38 -2.39 -0.01 3.51 16 35 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.15 3.47 7.65 -2.91 -0.02 3.45 16 Total: -1.00 -68.65 311.77 6.90 -61.74 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.08 Total: 15.76 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.06 Total: -25.49 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.16 Total: -39.71 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.85 Total: 46.17 kcal Total: -68.65 6.90 -61.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518002916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.468 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds