Wall clock time and date at job start Tue Mar 31 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38142 * 119.96036 * 2 1 4 4 C 1.38854 * 119.92155 * 180.29339 * 3 2 1 5 5 N 1.39922 * 120.06549 * 179.69840 * 4 3 2 6 6 C 1.34778 * 120.00093 * 214.81524 * 5 4 3 7 7 O 1.21281 * 119.99700 * 355.37815 * 6 5 4 8 8 C 1.50703 * 120.00057 * 175.10703 * 6 5 4 9 9 C 1.52996 * 109.47045 * 180.27583 * 8 6 5 10 10 C 1.50703 * 109.47045 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99621 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99905 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99770 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00177 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47177 * 90.00054 * 14 12 10 16 16 H 1.48500 * 109.47446 * 209.99781 * 14 12 10 17 17 H 1.48500 * 109.47370 * 330.00042 * 14 12 10 18 18 C 1.38895 * 119.86106 * 359.43420 * 4 3 2 19 19 C 1.38086 * 119.92778 * 0.27034 * 18 4 3 20 20 N 1.48018 * 119.96229 * 179.97438 * 19 18 4 21 21 O 1.21799 * 120.00255 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99938 * 180.02562 * 20 19 18 23 23 C 1.38254 * 119.96488 * 179.70514 * 2 1 3 24 24 H 1.08995 * 109.47121 * 270.29268 * 1 2 3 25 25 H 1.09001 * 109.47147 * 30.29899 * 1 2 3 26 26 H 1.09003 * 109.46636 * 150.29349 * 1 2 3 27 27 H 1.07995 * 120.03780 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00061 * 34.81964 * 5 4 3 29 29 H 1.09004 * 109.46682 * 300.27599 * 8 6 5 30 30 H 1.08998 * 109.47203 * 60.27410 * 8 6 5 31 31 H 1.09004 * 109.47394 * 299.99580 * 9 8 6 32 32 H 1.08998 * 109.47261 * 59.99862 * 9 8 6 33 33 H 0.96999 * 120.00434 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.03452 * 180.25203 * 18 4 3 35 35 H 1.07997 * 119.93133 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5855 1.1959 -0.0062 5 7 4.2873 2.4064 -0.0126 6 6 5.4513 2.5069 -0.6844 7 8 5.9328 1.5274 -1.2131 8 6 6.1514 3.8378 -0.7839 9 6 7.4365 3.6784 -1.5987 10 6 8.1362 5.0093 -1.6986 11 1 7.7070 5.8817 -1.2284 12 6 9.3238 5.1135 -2.3913 13 7 9.9342 6.2751 -2.4790 14 14 10.0658 3.6048 -3.2052 15 1 9.5532 3.4891 -4.5941 16 1 11.5449 3.7340 -3.2327 17 1 9.6892 2.3916 -2.4359 18 6 4.2762 -0.0091 -0.0004 19 6 3.5806 -1.2019 0.0058 20 7 4.3160 -2.4865 0.0113 21 8 5.5340 -2.4910 0.0100 22 8 3.7031 -3.5391 0.0163 23 6 2.1976 -1.1977 0.0062 24 1 -0.3633 0.0052 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5093 27 1 1.6569 2.1321 0.0004 28 1 3.9360 3.1732 0.4666 29 1 5.4963 4.5570 -1.2755 30 1 6.3972 4.1947 0.2163 31 1 8.0916 2.9591 -1.1070 32 1 7.1907 3.3215 -2.5988 33 1 10.7695 6.3485 -2.9666 34 1 5.3563 -0.0131 -0.0011 35 1 1.6559 -2.1320 0.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519034892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:42 Heat of formation + Delta-G solvation = -23.726121 kcal Electronic energy + Delta-G solvation = -20633.058674 eV Core-core repulsion = 17213.152485 eV Total energy + Delta-G solvation = -3419.906189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25360 -40.77080 -38.99968 -36.60138 -35.26668 -33.72509 -33.36526 -31.65695 -30.46871 -27.65198 -26.77837 -26.38531 -23.11513 -22.35328 -21.05188 -20.05816 -19.17433 -18.66527 -17.59035 -17.47910 -16.83986 -16.64896 -16.30134 -15.87520 -15.03589 -14.36365 -14.17473 -13.95357 -13.61057 -13.19151 -12.83603 -12.67891 -12.61387 -12.50725 -12.34142 -11.61446 -11.55476 -11.26103 -11.16718 -11.07881 -10.80928 -10.33746 -10.19746 -9.89558 -9.67021 -9.49118 -9.30074 -8.67124 -8.58417 -6.10933 -4.11146 -0.30562 0.63903 1.18821 1.29695 2.57665 2.80704 3.09179 3.33340 3.40924 3.50825 4.04736 4.41501 4.42873 4.44179 4.48863 4.60144 4.86818 5.03497 5.08541 5.15762 5.24391 5.39382 5.50905 5.69751 5.74565 5.77953 5.84294 5.87008 6.23256 6.43403 6.45966 7.18772 7.21561 7.27991 7.58852 7.67238 8.11511 8.41840 8.90405 9.51414 11.01580 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.003962 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.161718 B = 7065.797695 C = 8127.123885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 C -0.103 4.103 4 C 0.166 3.834 5 N -0.682 5.682 6 C 0.509 3.491 7 O -0.511 6.511 8 C -0.119 4.119 9 C 0.000 4.000 10 C -0.529 4.529 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.260 1.260 18 C -0.071 4.071 19 C -0.019 4.019 20 N 0.028 4.972 21 O -0.150 6.150 22 O -0.165 6.165 23 C -0.083 4.083 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.417 0.583 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.265 0.735 34 H 0.171 0.829 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.388 -10.301 7.710 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.124 4.124 4 C 0.070 3.930 5 N -0.329 5.329 6 C 0.299 3.701 7 O -0.384 6.384 8 C -0.158 4.158 9 C -0.038 4.038 10 C -0.567 4.567 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.185 1.185 18 C -0.093 4.093 19 C -0.103 4.103 20 N 0.548 4.452 21 O -0.368 6.368 22 O -0.379 6.379 23 C -0.103 4.103 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.254 0.746 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.188 0.812 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.157 -10.225 7.211 24.580 hybrid contribution 0.541 -0.585 -0.272 0.842 sum -20.616 -10.811 6.939 24.291 Atomic orbital electron populations 1.20825 0.89042 1.03849 1.03225 1.19634 0.96985 0.90997 0.99024 1.21273 0.92079 0.99306 0.99768 1.17505 0.90569 0.86209 0.98742 1.43949 1.24140 1.11557 1.53234 1.22054 0.78979 0.93254 0.75775 1.90701 1.63800 1.39320 1.44626 1.21740 0.99491 0.90727 1.03889 1.19414 0.91081 0.98171 0.95132 1.21038 1.06816 0.94041 1.34786 0.90853 1.24959 0.96631 0.95866 0.95625 1.69898 1.17783 1.23941 1.42299 0.86813 0.78223 0.84222 0.80418 1.20204 1.21282 1.18458 1.21208 1.03635 0.88744 0.95692 1.20871 0.92215 0.83643 1.13549 1.43584 1.01365 1.02677 0.97534 1.94605 0.95215 1.94201 1.52789 1.94500 1.69773 1.20062 1.53603 1.20834 0.90825 1.00245 0.98423 0.90251 0.90584 0.90665 0.83685 0.74584 0.88886 0.88833 0.95547 0.96126 0.92577 0.81160 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.01 36.01 0.36 -0.13 16 2 C -0.06 -0.50 5.88 -104.65 -0.62 -1.11 16 3 C -0.10 -0.83 9.62 -39.39 -0.38 -1.21 16 4 C 0.17 1.90 6.30 -83.69 -0.53 1.37 16 5 N -0.68 -7.64 5.34 -9.86 -0.05 -7.69 16 6 C 0.51 8.15 7.67 -10.98 -0.08 8.06 16 7 O -0.51 -10.30 13.42 5.56 0.07 -10.22 16 8 C -0.12 -2.03 5.64 -27.88 -0.16 -2.19 16 9 C 0.00 0.00 3.33 -27.88 -0.09 -0.09 16 10 C -0.53 -14.53 9.66 -34.44 -0.33 -14.86 16 11 H 0.07 2.09 7.99 -52.49 -0.42 1.68 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 14 Si 0.88 22.15 27.47 -169.99 -4.67 17.49 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 18 C -0.07 -1.00 8.20 -39.39 -0.32 -1.32 16 19 C -0.02 -0.26 6.85 -79.98 -0.55 -0.80 16 20 N 0.03 0.43 4.45 33.95 0.15 0.59 16 21 O -0.15 -2.59 18.45 -29.46 -0.54 -3.13 16 22 O -0.16 -2.45 18.44 -29.46 -0.54 -2.99 16 23 C -0.08 -0.82 9.21 -39.55 -0.36 -1.18 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 26 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 28 H 0.42 3.02 8.82 -40.82 -0.36 2.66 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 32 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.17 2.85 5.77 -52.48 -0.30 2.54 16 35 H 0.15 1.23 7.60 -52.49 -0.40 0.83 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -34.40 311.96 -7.21 -41.61 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.94 Total: -2.26 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.16 Total: -11.53 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.87 Total: -33.66 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.01 Total: -16.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.40 -7.21 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519034892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.882 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds