Wall clock time and date at job start Tue Mar 31 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38142 * 119.96036 * 2 1 4 4 C 1.38854 * 119.92155 * 180.29339 * 3 2 1 5 5 N 1.39922 * 120.06549 * 179.69840 * 4 3 2 6 6 C 1.34778 * 120.00093 * 214.81524 * 5 4 3 7 7 O 1.21281 * 119.99700 * 355.37815 * 6 5 4 8 8 C 1.50703 * 120.00057 * 175.10703 * 6 5 4 9 9 C 1.52996 * 109.47045 * 180.27583 * 8 6 5 10 10 C 1.50703 * 109.47045 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99621 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99905 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99770 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 120.00177 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47177 * 90.00054 * 14 12 10 16 16 H 1.48500 * 109.47446 * 209.99781 * 14 12 10 17 17 H 1.48500 * 109.47370 * 330.00042 * 14 12 10 18 18 C 1.38895 * 119.86106 * 359.43420 * 4 3 2 19 19 C 1.38086 * 119.92778 * 0.27034 * 18 4 3 20 20 N 1.48018 * 119.96229 * 179.97438 * 19 18 4 21 21 O 1.21799 * 120.00255 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99938 * 180.02562 * 20 19 18 23 23 C 1.38254 * 119.96488 * 179.70514 * 2 1 3 24 24 H 1.08995 * 109.47121 * 270.29268 * 1 2 3 25 25 H 1.09001 * 109.47147 * 30.29899 * 1 2 3 26 26 H 1.09003 * 109.46636 * 150.29349 * 1 2 3 27 27 H 1.07995 * 120.03780 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00061 * 34.81964 * 5 4 3 29 29 H 1.09004 * 109.46682 * 300.27599 * 8 6 5 30 30 H 1.08998 * 109.47203 * 60.27410 * 8 6 5 31 31 H 1.09004 * 109.47394 * 299.99580 * 9 8 6 32 32 H 1.08998 * 109.47261 * 59.99862 * 9 8 6 33 33 H 0.96999 * 120.00434 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.03452 * 180.25203 * 18 4 3 35 35 H 1.07997 * 119.93133 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5855 1.1959 -0.0062 5 7 4.2873 2.4064 -0.0126 6 6 5.4513 2.5069 -0.6844 7 8 5.9328 1.5274 -1.2131 8 6 6.1514 3.8378 -0.7839 9 6 7.4365 3.6784 -1.5987 10 6 8.1362 5.0093 -1.6986 11 1 7.7070 5.8817 -1.2284 12 6 9.3238 5.1135 -2.3913 13 7 9.9342 6.2751 -2.4790 14 14 10.0658 3.6048 -3.2052 15 1 9.5532 3.4891 -4.5941 16 1 11.5449 3.7340 -3.2327 17 1 9.6892 2.3916 -2.4359 18 6 4.2762 -0.0091 -0.0004 19 6 3.5806 -1.2019 0.0058 20 7 4.3160 -2.4865 0.0113 21 8 5.5340 -2.4910 0.0100 22 8 3.7031 -3.5391 0.0163 23 6 2.1976 -1.1977 0.0062 24 1 -0.3633 0.0052 1.0276 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5093 27 1 1.6569 2.1321 0.0004 28 1 3.9360 3.1732 0.4666 29 1 5.4963 4.5570 -1.2755 30 1 6.3972 4.1947 0.2163 31 1 8.0916 2.9591 -1.1070 32 1 7.1907 3.3215 -2.5988 33 1 10.7695 6.3485 -2.9666 34 1 5.3563 -0.0131 -0.0011 35 1 1.6559 -2.1320 0.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519034892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:42 Heat of formation + Delta-G solvation = -46.484135 kcal Electronic energy + Delta-G solvation = -20634.045535 eV Core-core repulsion = 17213.152485 eV Total energy + Delta-G solvation = -3420.893050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.37484 -41.82588 -40.03928 -37.78061 -36.33725 -35.61020 -34.18612 -33.45211 -31.56565 -28.33011 -28.03293 -27.80075 -24.41060 -23.35214 -22.46577 -21.31894 -20.23168 -19.81924 -19.21603 -18.72342 -17.93133 -17.65573 -17.52784 -16.96877 -16.33534 -16.09195 -15.25426 -14.97330 -14.71990 -14.57122 -14.39586 -13.53227 -13.49892 -13.39118 -13.19490 -12.95474 -12.93799 -12.79733 -12.40942 -12.36229 -12.17664 -12.02616 -11.82776 -11.81254 -11.43303 -10.96878 -10.80582 -10.30892 -9.58755 -8.34273 -6.36705 -1.33289 -0.19887 0.19654 0.28280 1.29758 1.33619 1.40200 1.47167 1.80519 2.23420 2.31666 3.02039 3.30705 3.50736 3.65574 3.79532 3.86317 3.90286 4.22968 4.33074 4.43708 4.52431 4.70971 4.82133 4.84722 4.88940 4.94746 5.06974 5.22241 5.27201 5.33298 5.39341 5.55353 5.58323 6.18204 6.26581 6.38684 6.70080 6.99926 7.29041 8.81143 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.003962 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.161718 B = 7065.797695 C = 8127.123885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.075 4.075 4 C 0.150 3.850 5 N -0.657 5.657 6 C 0.514 3.486 7 O -0.561 6.561 8 C -0.111 4.111 9 C 0.000 4.000 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.017 3.983 13 N -0.941 5.941 14 Si 0.932 3.068 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.100 4.100 19 C -0.041 4.041 20 N 0.029 4.971 21 O -0.228 6.228 22 O -0.133 6.133 23 C -0.074 4.074 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.439 0.561 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.645 -10.235 8.205 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.095 4.095 4 C 0.054 3.946 5 N -0.306 5.306 6 C 0.305 3.695 7 O -0.438 6.438 8 C -0.150 4.150 9 C -0.038 4.038 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.181 4.181 13 N -0.582 5.582 14 Si 0.757 3.243 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.122 4.122 19 C -0.124 4.124 20 N 0.544 4.456 21 O -0.428 6.428 22 O -0.360 6.360 23 C -0.093 4.093 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.208 0.792 28 H 0.280 0.720 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -25.320 -10.088 7.741 28.333 hybrid contribution 1.568 -0.610 -0.362 1.721 sum -23.752 -10.698 7.379 27.075 Atomic orbital electron populations 1.20973 0.85669 1.05332 1.04816 1.20142 0.98954 0.89700 0.96473 1.21753 0.90203 1.01478 0.96056 1.17645 0.91907 0.84877 1.00157 1.43473 1.22535 1.12486 1.52061 1.21678 0.80049 0.91924 0.75867 1.90714 1.65444 1.40553 1.47129 1.21529 0.97209 0.92192 1.04113 1.19270 0.93675 0.95287 0.95536 1.21398 1.06605 0.95160 1.33291 0.92525 1.25725 0.97532 0.98152 0.96686 1.70001 1.18584 1.25727 1.43854 0.85931 0.77828 0.80906 0.79648 1.19458 1.20461 1.18928 1.21026 1.02209 0.90610 0.98335 1.21035 0.93273 0.81932 1.16167 1.43964 1.01222 1.03583 0.96784 1.94618 0.96456 1.94672 1.57035 1.94429 1.69353 1.21112 1.51143 1.21264 0.89068 1.02356 0.96643 0.88383 0.88670 0.89757 0.79223 0.71951 0.86510 0.86832 0.97323 0.97312 0.92365 0.85058 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.28 10.01 71.24 0.71 0.44 16 2 C -0.05 -0.54 5.88 -19.88 -0.12 -0.65 16 3 C -0.07 -0.84 9.62 22.39 0.22 -0.63 16 4 C 0.15 3.12 6.30 38.15 0.24 3.36 16 5 N -0.66 -13.28 5.34 -303.50 -1.62 -14.90 16 6 C 0.51 16.20 7.67 87.66 0.67 16.88 16 7 O -0.56 -23.47 13.42 -3.03 -0.04 -23.51 16 8 C -0.11 -3.68 5.64 29.85 0.17 -3.51 16 9 C 0.00 0.02 3.33 29.85 0.10 0.12 16 10 C -0.53 -29.25 9.66 25.60 0.25 -29.01 16 11 H 0.06 3.27 7.99 -2.91 -0.02 3.24 16 12 C 0.02 1.00 5.47 84.66 0.46 1.46 16 13 N -0.94 -57.99 13.96 21.45 0.30 -57.70 16 14 Si 0.93 46.62 27.47 68.60 1.88 48.50 16 15 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 17 H -0.26 -13.33 6.54 99.48 0.65 -12.68 16 18 C -0.10 -2.88 8.20 22.39 0.18 -2.70 16 19 C -0.04 -1.07 6.85 36.36 0.25 -0.82 16 20 N 0.03 0.95 4.45 -46.51 -0.21 0.74 16 21 O -0.23 -8.68 18.45 18.89 0.35 -8.33 16 22 O -0.13 -3.93 18.44 18.89 0.35 -3.58 16 23 C -0.07 -1.22 9.21 22.29 0.21 -1.02 16 24 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.09 -0.02 8.09 -2.39 -0.02 -0.04 16 26 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 27 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 28 H 0.44 4.70 8.82 -92.71 -0.82 3.89 16 29 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 30 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.01 0.43 7.16 -2.38 -0.02 0.41 16 32 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.13 4.86 5.77 -2.91 -0.02 4.84 16 35 H 0.17 2.13 7.60 -2.91 -0.02 2.11 16 Total: -1.00 -80.57 311.96 4.61 -75.96 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: 0.26 Total: -1.11 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 3.34 Total: -16.08 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -1.53 Total: -71.85 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: 0.66 Total: -35.42 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -80.57 4.61 -75.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519034892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.473 kcal (2) G-P(sol) polarization free energy of solvation -80.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds