Wall clock time and date at job start Tue Mar 31 2020 00:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 O 1.45199 * 109.46941 * 180.02562 * 9 7 2 12 12 C 1.34731 * 117.00433 * 150.00094 * 11 9 7 13 13 O 1.21487 * 119.99700 * 0.02562 * 12 11 9 14 14 C 1.47589 * 120.00329 * 179.97438 * 12 11 9 15 15 C 1.40989 * 125.98346 * 179.97438 * 14 12 11 16 16 C 1.36144 * 107.95623 * 180.08199 * 15 14 12 17 17 N 1.35824 * 107.32579 * 359.61242 * 16 15 14 18 18 N 1.31883 * 125.98303 * 359.69185 * 14 12 11 19 19 C 1.47420 * 108.07368 * 180.76899 * 17 16 15 20 20 C 1.54651 * 102.35730 * 15.19936 * 19 17 16 21 21 O 1.36124 * 140.87845 * 179.12918 * 16 15 14 22 22 C 1.53006 * 109.47303 * 60.00618 * 9 7 2 23 23 C 1.52997 * 117.49372 * 248.74448 * 22 9 7 24 24 C 1.52997 * 117.49914 * 180.08414 * 22 9 7 25 25 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08003 * 126.01998 * 0.06484 * 15 14 12 27 27 H 1.09003 * 110.82860 * 133.41355 * 19 17 16 28 28 H 1.09000 * 110.83080 * 256.98023 * 19 17 16 29 29 H 1.09001 * 110.85215 * 93.36528 * 20 19 17 30 30 H 1.09005 * 110.85068 * 216.78715 * 20 19 17 31 31 H 1.09000 * 115.55084 * 34.40880 * 22 9 7 32 32 H 1.09001 * 117.50514 * 359.97438 * 23 22 9 33 33 H 1.09006 * 117.49799 * 145.01869 * 23 22 9 34 34 H 1.09000 * 117.49627 * 214.97448 * 24 22 9 35 35 H 1.08996 * 117.50177 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 8 2.1945 -3.6028 0.0041 12 6 1.8041 -4.7420 0.6083 13 8 0.7053 -4.8115 1.1217 14 6 2.7110 -5.9059 0.6455 15 6 2.4337 -7.1534 1.2410 16 6 3.5202 -7.9542 1.0630 17 7 4.4430 -7.2362 0.3720 18 7 3.9205 -5.9627 0.1230 19 6 5.6210 -8.0952 0.1536 20 6 5.0675 -9.5034 0.4734 21 8 3.9683 -9.2062 1.3540 22 6 0.3662 -2.5827 -1.2402 23 6 -1.1486 -2.5147 -1.0363 24 6 -0.4861 -3.8408 -1.4182 25 1 -0.4850 0.8401 0.0004 26 1 1.5203 -7.4256 1.7491 27 1 5.9568 -8.0367 -0.8818 28 1 6.4262 -7.8304 0.8389 29 1 4.7164 -9.9973 -0.4326 30 1 5.8195 -10.1105 0.9776 31 1 0.7744 -2.1201 -2.1388 32 1 -1.5149 -2.4108 -0.0150 33 1 -1.7371 -2.0076 -1.8011 34 1 -0.6390 -4.2056 -2.4339 35 1 -0.4163 -4.6091 -0.6482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526991733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:29 Heat of formation + Delta-G solvation = -5.671742 kcal Electronic energy + Delta-G solvation = -21337.683352 eV Core-core repulsion = 17918.560059 eV Total energy + Delta-G solvation = -3419.123292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.42052 -41.38769 -39.62508 -38.17730 -36.76622 -34.70990 -34.34488 -31.30789 -30.14396 -29.72833 -26.32356 -24.96549 -23.83390 -23.05365 -22.56791 -21.71430 -20.99249 -19.18861 -18.57250 -18.32819 -17.63835 -17.35649 -17.10376 -16.60437 -16.40584 -16.05627 -15.70283 -15.27748 -14.79182 -14.52080 -14.29484 -14.01459 -13.57541 -13.31040 -13.13171 -12.97995 -12.79952 -12.33844 -12.21425 -12.18579 -12.12164 -11.77739 -11.76934 -11.33356 -10.94894 -10.61031 -10.44294 -10.34567 -9.74496 -8.20895 -6.37798 -0.03815 0.72377 0.83895 1.41902 1.44805 1.49362 1.58456 1.98764 2.18292 2.44429 3.02384 3.06564 3.23933 3.43911 3.83545 3.86064 4.06706 4.13374 4.22181 4.31136 4.40856 4.44458 4.46567 4.62157 4.67373 4.71608 4.82326 5.10750 5.13304 5.24418 5.37202 5.47468 5.52992 5.74344 5.79520 6.05996 6.24733 6.62245 6.88378 7.30746 8.85641 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.004342 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.271565 B = 6447.188646 C = 7120.348061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.029 3.971 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.559 4.559 8 H 0.060 0.940 9 C 0.253 3.747 10 H 0.015 0.985 11 O -0.346 6.346 12 C 0.541 3.459 13 O -0.518 6.518 14 C 0.053 3.947 15 C -0.229 4.229 16 C 0.246 3.754 17 N -0.406 5.406 18 N -0.218 5.218 19 C 0.082 3.918 20 C 0.042 3.958 21 O -0.283 6.283 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.203 4.203 25 H 0.269 0.731 26 H 0.173 0.827 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.175 0.825 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -19.116 -1.167 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.596 4.596 8 H 0.078 0.922 9 C 0.200 3.800 10 H 0.033 0.967 11 O -0.261 6.261 12 C 0.384 3.616 13 O -0.406 6.406 14 C -0.110 4.110 15 C -0.258 4.258 16 C 0.077 3.923 17 N -0.206 5.206 18 N -0.050 5.050 19 C -0.036 4.036 20 C -0.032 4.032 21 O -0.190 6.190 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.240 4.240 25 H 0.078 0.922 26 H 0.190 0.810 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.132 0.868 30 H 0.193 0.807 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.050 -18.488 -1.567 21.596 hybrid contribution -0.472 0.765 0.458 1.009 sum 10.579 -17.723 -1.108 20.670 Atomic orbital electron populations 1.70150 1.06876 1.28058 1.47653 1.25679 0.95990 1.02090 0.93585 0.85306 0.78349 0.77816 0.78626 1.19451 1.20078 1.19569 1.21134 0.93698 0.89642 1.55137 0.92172 1.20040 0.86077 0.80676 0.93221 0.96690 1.86626 1.48829 1.21957 1.68734 1.19854 0.84129 0.82552 0.75111 1.90757 1.21891 1.83362 1.44588 1.20685 0.93233 0.93729 1.03358 1.20035 1.00361 0.90938 1.14478 1.20558 0.91347 0.85057 0.95365 1.51277 1.15940 1.09045 1.44304 1.77879 1.09613 0.95609 1.21903 1.23952 0.85541 0.86136 1.07930 1.24989 0.87288 0.94967 0.95964 1.87163 1.50390 1.24957 1.56481 1.22416 0.93529 1.00260 0.99298 1.22304 0.94339 0.97788 1.00888 1.23284 1.06539 0.91797 1.02344 0.92226 0.80981 0.84483 0.85423 0.86820 0.80744 0.90134 0.91277 0.88984 0.87835 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.55 11.42 21.45 0.24 -50.31 16 2 C 0.03 1.62 5.31 84.66 0.45 2.07 16 3 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.56 -32.85 8.88 25.60 0.23 -32.63 16 8 H 0.06 3.55 7.81 -2.92 -0.02 3.53 16 9 C 0.25 14.31 2.26 29.85 0.07 14.38 16 10 H 0.02 0.96 6.92 -2.39 -0.02 0.94 16 11 O -0.35 -18.37 9.85 -56.41 -0.56 -18.92 16 12 C 0.54 25.71 7.19 70.29 0.51 26.22 16 13 O -0.52 -25.90 13.99 19.88 0.28 -25.62 16 14 C 0.05 2.10 7.11 42.28 0.30 2.40 16 15 C -0.23 -7.44 10.60 22.46 0.24 -7.20 16 16 C 0.25 6.43 8.32 83.59 0.70 7.13 16 17 N -0.41 -10.55 5.01 -453.34 -2.27 -12.82 16 18 N -0.22 -8.05 12.73 -48.56 -0.62 -8.67 16 19 C 0.08 0.87 8.10 86.77 0.70 1.58 16 20 C 0.04 0.25 8.08 72.54 0.59 0.84 16 21 O -0.28 -5.10 11.19 -94.96 -1.06 -6.17 16 22 C -0.14 -7.02 4.47 -10.79 -0.05 -7.07 16 23 C -0.12 -5.49 9.04 30.62 0.28 -5.22 16 24 C -0.20 -9.00 9.81 30.62 0.30 -8.70 16 25 H 0.27 14.29 8.31 -92.71 -0.77 13.51 16 26 H 0.17 5.17 8.06 -2.91 -0.02 5.14 16 27 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.18 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H 0.08 4.26 8.11 -2.39 -0.02 4.24 16 32 H 0.07 3.54 8.05 -2.39 -0.02 3.52 16 33 H 0.09 3.98 8.14 -2.38 -0.02 3.96 16 34 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.08 3.96 5.36 -2.39 -0.01 3.94 16 Total: -1.00 -75.62 305.66 3.46 -72.16 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.12 Total: 10.70 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 4.30 Total: -6.22 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.64 Total: -71.80 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.34 Total: -50.71 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -75.62 3.46 -72.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.484 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds