Wall clock time and date at job start Tue Mar 31 2020 00:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48505 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47073 * 299.99922 * 3 2 1 6 6 H 1.48502 * 109.46904 * 59.99700 * 3 2 1 7 7 C 1.37873 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99831 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47463 * 60.00085 * 9 7 2 11 11 O 1.45204 * 109.47064 * 179.97438 * 9 7 2 12 12 C 1.34728 * 117.00029 * 210.00167 * 11 9 7 13 13 O 1.21492 * 119.99888 * 359.97438 * 12 11 9 14 14 C 1.47596 * 120.00167 * 180.02562 * 12 11 9 15 15 C 1.40985 * 125.98152 * 179.71612 * 14 12 11 16 16 C 1.36151 * 107.95046 * 179.77382 * 15 14 12 17 17 N 1.35813 * 107.32385 * 0.73494 * 16 15 14 18 18 N 1.31885 * 125.97854 * 0.02562 * 14 12 11 19 19 C 1.47425 * 108.06957 * 178.99988 * 17 16 15 20 20 C 1.54650 * 102.35345 * 344.72981 * 19 17 16 21 21 O 1.36132 * 140.87354 * 180.73965 * 16 15 14 22 22 C 1.52996 * 109.47245 * 299.99632 * 9 7 2 23 23 C 1.53002 * 117.49888 * 111.25511 * 22 9 7 24 24 C 1.53000 * 117.50107 * 179.91273 * 22 9 7 25 25 H 0.96991 * 120.00328 * 0.02562 * 1 2 3 26 26 H 1.08010 * 126.02406 * 359.89910 * 15 14 12 27 27 H 1.09006 * 110.82883 * 102.96495 * 19 17 16 28 28 H 1.09007 * 110.83396 * 226.52783 * 19 17 16 29 29 H 1.08993 * 110.86456 * 266.66498 * 20 19 17 30 30 H 1.09000 * 111.02331 * 143.10824 * 20 19 17 31 31 H 1.09002 * 115.54951 * 325.58484 * 22 9 7 32 32 H 1.09000 * 117.49996 * 215.00804 * 23 22 9 33 33 H 1.08999 * 117.49664 * 0.02562 * 23 22 9 34 34 H 1.09008 * 117.49673 * 359.97438 * 24 22 9 35 35 H 1.08999 * 117.49959 * 144.99502 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 2.1947 -3.6027 0.0005 12 6 1.8021 -4.7432 -0.5997 13 8 0.7012 -4.8139 -1.1088 14 6 2.7088 -5.9072 -0.6379 15 6 2.4270 -7.1579 -1.2243 16 6 3.5164 -7.9565 -1.0535 17 7 4.4423 -7.2365 -0.3688 18 7 3.9224 -5.9611 -0.1243 19 6 5.6213 -8.0949 -0.1533 20 6 5.0658 -9.5042 -0.4647 21 8 3.9623 -9.2101 -1.3411 22 6 0.3711 -2.5800 1.2495 23 6 -1.1445 -2.5125 1.0513 24 6 -0.4805 -3.8377 1.4334 25 1 -0.4850 0.8399 -0.0004 26 1 1.5094 -7.4333 -1.7230 27 1 6.4230 -7.8327 -0.8437 28 1 5.9625 -8.0327 0.8801 29 1 4.7188 -9.9944 0.4448 30 1 5.8121 -10.1153 -0.9723 31 1 0.7827 -2.1154 2.1455 32 1 -1.7301 -2.0035 1.8169 33 1 -1.5147 -2.4110 0.0311 34 1 -0.4141 -4.6074 0.6644 35 1 -0.6291 -4.2005 2.4505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526991734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:33 Heat of formation + Delta-G solvation = 17.192537 kcal Electronic energy + Delta-G solvation = -21336.713463 eV Core-core repulsion = 17918.581641 eV Total energy + Delta-G solvation = -3418.131823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.37487 -39.66588 -38.48221 -36.30580 -34.86856 -33.43861 -32.60569 -30.19729 -28.95953 -27.85084 -24.94720 -23.34919 -22.62130 -21.48230 -21.19194 -20.04845 -19.13456 -17.90220 -17.24046 -16.56784 -16.46157 -15.95675 -15.45300 -15.24863 -14.98284 -14.51267 -14.31871 -13.86231 -13.69553 -12.97924 -12.82916 -12.60951 -12.52703 -11.58211 -11.56402 -11.29496 -11.03096 -10.93560 -10.83458 -10.39025 -10.25037 -9.93022 -9.77575 -9.36279 -9.27367 -8.98602 -8.60765 -8.59533 -8.39248 -6.11152 -4.18426 1.34527 1.73440 2.05855 2.58358 3.27929 3.34772 3.38978 3.53317 3.60609 3.72787 4.23763 4.35304 4.42512 4.68472 4.87314 4.93104 5.10522 5.15027 5.21357 5.48324 5.65833 5.85558 6.00222 6.20145 6.32914 6.44517 6.61011 6.68212 6.75437 7.04539 7.20186 7.26183 7.40389 7.44903 7.65213 7.87406 8.12501 8.60693 8.92244 9.45702 10.95790 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.004342 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.977022 B = 6447.163151 C = 7120.730498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.247 3.753 10 H 0.052 0.948 11 O -0.332 6.332 12 C 0.543 3.457 13 O -0.497 6.497 14 C 0.079 3.921 15 C -0.211 4.211 16 C 0.226 3.774 17 N -0.417 5.417 18 N -0.185 5.185 19 C 0.098 3.902 20 C 0.042 3.958 21 O -0.279 6.279 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.230 4.230 25 H 0.263 0.737 26 H 0.167 0.833 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -17.402 0.483 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.195 3.805 10 H 0.069 0.931 11 O -0.246 6.246 12 C 0.384 3.616 13 O -0.384 6.384 14 C -0.087 4.087 15 C -0.240 4.240 16 C 0.059 3.941 17 N -0.215 5.215 18 N -0.015 5.015 19 C -0.023 4.023 20 C -0.035 4.035 21 O -0.187 6.187 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.267 4.267 25 H 0.073 0.927 26 H 0.185 0.815 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.320 -16.733 0.877 19.174 hybrid contribution -0.099 0.448 -0.221 0.509 sum 9.221 -16.285 0.656 18.726 Atomic orbital electron populations 1.70053 1.05718 1.26879 1.48255 1.24863 0.95027 0.99009 0.94575 0.86300 0.80069 0.82615 0.77626 1.19522 1.20826 1.20836 1.20947 0.93971 0.88188 1.53245 0.91109 1.20352 0.86103 0.80178 0.93853 0.93068 1.86647 1.48829 1.21157 1.68014 1.19352 0.83670 0.82531 0.76087 1.90797 1.20672 1.83044 1.43905 1.21161 0.92682 0.94026 1.00842 1.20015 0.98728 0.91450 1.13843 1.20679 0.92231 0.83892 0.97261 1.50852 1.14177 1.10280 1.46155 1.78053 1.09752 0.92667 1.21061 1.23228 0.86856 0.86591 1.05580 1.24442 0.87920 0.95738 0.95365 1.87129 1.48758 1.26993 1.55785 1.22602 0.92922 0.97559 1.00435 1.22371 0.95409 0.96672 1.01465 1.23290 1.09412 0.93014 1.00946 0.92688 0.81501 0.87651 0.86886 0.88842 0.85274 0.89208 0.90746 0.89233 0.88824 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.31 11.43 55.43 0.63 -23.68 16 2 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.86 8.88 -34.44 -0.31 -15.17 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.25 6.66 2.25 -27.88 -0.06 6.59 16 10 H 0.05 1.50 6.92 -51.93 -0.36 1.14 16 11 O -0.33 -8.33 9.85 -40.57 -0.40 -8.73 16 12 C 0.54 12.22 7.19 34.55 0.25 12.47 16 13 O -0.50 -11.74 13.98 -19.26 -0.27 -12.01 16 14 C 0.08 1.51 7.11 -82.99 -0.59 0.92 16 15 C -0.21 -3.40 10.60 -39.29 -0.42 -3.82 16 16 C 0.23 3.14 8.32 -16.54 -0.14 3.00 16 17 N -0.42 -5.78 5.01 -59.63 -0.30 -6.08 16 18 N -0.19 -3.40 12.73 33.30 0.42 -2.98 16 19 C 0.10 0.71 8.10 -2.67 -0.02 0.69 16 20 C 0.04 0.22 8.08 38.03 0.31 0.53 16 21 O -0.28 -2.99 11.19 -20.16 -0.23 -3.21 16 22 C -0.12 -2.91 4.47 -90.62 -0.41 -3.31 16 23 C -0.12 -2.84 9.04 -26.69 -0.24 -3.08 16 24 C -0.23 -5.07 9.80 -26.70 -0.26 -5.33 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.17 2.44 8.06 -52.48 -0.42 2.01 16 27 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 2.31 8.11 -51.93 -0.42 1.89 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.09 2.21 8.05 -51.93 -0.42 1.79 16 34 H 0.09 2.13 5.37 -51.92 -0.28 1.85 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -33.05 305.68 -6.51 -39.57 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.98 Total: 1.04 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.98 Total: -4.71 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.76 Total: -32.73 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.89 Total: -23.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.05 -6.51 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.758 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds