Wall clock time and date at job start Tue Mar 31 2020 00:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48505 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47073 * 299.99922 * 3 2 1 6 6 H 1.48502 * 109.46904 * 59.99700 * 3 2 1 7 7 C 1.37873 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99831 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47463 * 60.00085 * 9 7 2 11 11 O 1.45204 * 109.47064 * 179.97438 * 9 7 2 12 12 C 1.34728 * 117.00029 * 210.00167 * 11 9 7 13 13 O 1.21492 * 119.99888 * 359.97438 * 12 11 9 14 14 C 1.47596 * 120.00167 * 180.02562 * 12 11 9 15 15 C 1.40985 * 125.98152 * 179.71612 * 14 12 11 16 16 C 1.36151 * 107.95046 * 179.77382 * 15 14 12 17 17 N 1.35813 * 107.32385 * 0.73494 * 16 15 14 18 18 N 1.31885 * 125.97854 * 0.02562 * 14 12 11 19 19 C 1.47425 * 108.06957 * 178.99988 * 17 16 15 20 20 C 1.54650 * 102.35345 * 344.72981 * 19 17 16 21 21 O 1.36132 * 140.87354 * 180.73965 * 16 15 14 22 22 C 1.52996 * 109.47245 * 299.99632 * 9 7 2 23 23 C 1.53002 * 117.49888 * 111.25511 * 22 9 7 24 24 C 1.53000 * 117.50107 * 179.91273 * 22 9 7 25 25 H 0.96991 * 120.00328 * 0.02562 * 1 2 3 26 26 H 1.08010 * 126.02406 * 359.89910 * 15 14 12 27 27 H 1.09006 * 110.82883 * 102.96495 * 19 17 16 28 28 H 1.09007 * 110.83396 * 226.52783 * 19 17 16 29 29 H 1.08993 * 110.86456 * 266.66498 * 20 19 17 30 30 H 1.09000 * 111.02331 * 143.10824 * 20 19 17 31 31 H 1.09002 * 115.54951 * 325.58484 * 22 9 7 32 32 H 1.09000 * 117.49996 * 215.00804 * 23 22 9 33 33 H 1.08999 * 117.49664 * 0.02562 * 23 22 9 34 34 H 1.09008 * 117.49673 * 359.97438 * 24 22 9 35 35 H 1.08999 * 117.49959 * 144.99502 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 2.1947 -3.6027 0.0005 12 6 1.8021 -4.7432 -0.5997 13 8 0.7012 -4.8139 -1.1088 14 6 2.7088 -5.9072 -0.6379 15 6 2.4270 -7.1579 -1.2243 16 6 3.5164 -7.9565 -1.0535 17 7 4.4423 -7.2365 -0.3688 18 7 3.9224 -5.9611 -0.1243 19 6 5.6213 -8.0949 -0.1533 20 6 5.0658 -9.5042 -0.4647 21 8 3.9623 -9.2101 -1.3411 22 6 0.3711 -2.5800 1.2495 23 6 -1.1445 -2.5125 1.0513 24 6 -0.4805 -3.8377 1.4334 25 1 -0.4850 0.8399 -0.0004 26 1 1.5094 -7.4333 -1.7230 27 1 6.4230 -7.8327 -0.8437 28 1 5.9625 -8.0327 0.8801 29 1 4.7188 -9.9944 0.4448 30 1 5.8121 -10.1153 -0.9723 31 1 0.7827 -2.1154 2.1455 32 1 -1.7301 -2.0035 1.8169 33 1 -1.5147 -2.4110 0.0311 34 1 -0.4141 -4.6074 0.6644 35 1 -0.6291 -4.2005 2.4505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526991734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:32 Heat of formation + Delta-G solvation = -5.760015 kcal Electronic energy + Delta-G solvation = -21337.708761 eV Core-core repulsion = 17918.581641 eV Total energy + Delta-G solvation = -3419.127120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.42058 -41.38703 -39.62480 -38.17724 -36.76630 -34.71188 -34.34352 -31.30734 -30.14379 -29.72892 -26.32466 -24.96765 -23.83502 -23.05379 -22.56707 -21.71433 -20.99271 -19.18782 -18.57316 -18.33052 -17.63844 -17.35617 -17.10395 -16.60417 -16.40648 -16.05413 -15.70238 -15.27667 -14.79175 -14.52365 -14.29454 -14.01519 -13.57863 -13.31063 -13.13441 -12.97690 -12.80510 -12.33809 -12.21529 -12.18769 -12.12209 -11.77154 -11.76793 -11.33412 -10.94598 -10.60634 -10.44924 -10.34633 -9.74482 -8.21118 -6.37901 -0.03829 0.72288 0.83886 1.41920 1.43337 1.49742 1.59521 1.98798 2.18475 2.44343 3.02353 3.06442 3.23849 3.43924 3.83432 3.86053 4.06723 4.13370 4.22219 4.31072 4.40804 4.44393 4.46479 4.62145 4.67352 4.71661 4.82278 5.10747 5.13284 5.24420 5.37158 5.47414 5.53046 5.74389 5.79550 6.05906 6.24700 6.62364 6.88452 7.30752 8.85687 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.004342 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.977022 B = 6447.163151 C = 7120.730498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.029 3.971 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.060 0.940 9 C 0.252 3.748 10 H 0.016 0.984 11 O -0.346 6.346 12 C 0.541 3.459 13 O -0.518 6.518 14 C 0.053 3.947 15 C -0.228 4.228 16 C 0.246 3.754 17 N -0.406 5.406 18 N -0.218 5.218 19 C 0.082 3.918 20 C 0.043 3.957 21 O -0.283 6.283 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.203 4.203 25 H 0.269 0.731 26 H 0.173 0.827 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.175 0.825 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 -19.124 1.185 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.078 0.922 9 C 0.200 3.800 10 H 0.033 0.967 11 O -0.261 6.261 12 C 0.384 3.616 13 O -0.406 6.406 14 C -0.110 4.110 15 C -0.258 4.258 16 C 0.077 3.923 17 N -0.206 5.206 18 N -0.050 5.050 19 C -0.035 4.035 20 C -0.032 4.032 21 O -0.190 6.190 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.239 4.239 25 H 0.078 0.922 26 H 0.190 0.810 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.192 0.808 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.055 -18.495 1.582 21.605 hybrid contribution -0.484 0.768 -0.463 1.019 sum 10.571 -17.727 1.120 20.670 Atomic orbital electron populations 1.70149 1.06873 1.28001 1.47742 1.25675 0.95986 1.02091 0.93597 0.85257 0.78637 0.78108 0.78091 1.19424 1.20034 1.19691 1.21163 0.93694 0.89636 1.55010 0.92185 1.20045 0.86098 0.80690 0.93215 0.96676 1.86627 1.48734 1.21873 1.68910 1.19857 0.84159 0.82560 0.75072 1.90758 1.21784 1.83404 1.44655 1.20687 0.93133 0.93686 1.03498 1.20040 1.00196 0.90927 1.14645 1.20560 0.91307 0.85033 0.95433 1.51274 1.15843 1.08905 1.44535 1.77883 1.09646 0.95512 1.21967 1.23946 0.85508 0.86128 1.07959 1.24991 0.87096 0.94975 0.96134 1.87168 1.50202 1.24783 1.56856 1.22417 0.93546 1.00277 0.99285 1.22304 0.94321 0.97815 1.00900 1.23285 1.06526 0.91803 1.02331 0.92231 0.80977 0.85430 0.84472 0.86824 0.80760 0.90113 0.88987 0.91274 0.89679 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.55 11.43 21.45 0.25 -50.30 16 2 C 0.03 1.61 5.30 84.65 0.45 2.06 16 3 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -32.79 8.88 25.60 0.23 -32.56 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.25 14.29 2.25 29.85 0.07 14.35 16 10 H 0.02 0.97 6.92 -2.39 -0.02 0.95 16 11 O -0.35 -18.36 9.85 -56.38 -0.56 -18.92 16 12 C 0.54 25.70 7.19 70.29 0.51 26.21 16 13 O -0.52 -25.89 13.98 19.86 0.28 -25.61 16 14 C 0.05 2.10 7.11 42.28 0.30 2.40 16 15 C -0.23 -7.43 10.60 22.46 0.24 -7.20 16 16 C 0.25 6.43 8.32 83.59 0.70 7.12 16 17 N -0.41 -10.55 5.01 -453.32 -2.27 -12.82 16 18 N -0.22 -8.05 12.73 -48.55 -0.62 -8.67 16 19 C 0.08 0.88 8.10 86.76 0.70 1.58 16 20 C 0.04 0.25 8.08 72.54 0.59 0.84 16 21 O -0.28 -5.11 11.19 -95.05 -1.06 -6.17 16 22 C -0.14 -7.03 4.47 -10.79 -0.05 -7.08 16 23 C -0.12 -5.50 9.04 30.62 0.28 -5.23 16 24 C -0.20 -8.99 9.80 30.62 0.30 -8.69 16 25 H 0.27 14.24 8.31 -92.72 -0.77 13.47 16 26 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 27 H 0.13 0.86 8.14 -2.38 -0.02 0.85 16 28 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.18 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.08 4.26 8.11 -2.39 -0.02 4.24 16 32 H 0.09 3.98 8.14 -2.39 -0.02 3.96 16 33 H 0.07 3.54 8.05 -2.39 -0.02 3.52 16 34 H 0.08 3.96 5.37 -2.38 -0.01 3.94 16 35 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 Total: -1.00 -75.66 305.68 3.46 -72.19 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.12 Total: 10.61 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.30 Total: -6.19 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -2.64 Total: -71.79 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -1.34 Total: -50.70 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -75.66 3.46 -72.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.434 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds