Wall clock time and date at job start Tue Mar 31 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48505 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47359 * 299.99422 * 3 2 1 6 6 H 1.48499 * 109.47412 * 60.00158 * 3 2 1 7 7 C 1.37876 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99639 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.94916 * 309.66371 * 9 7 2 11 11 C 1.53944 * 113.74229 * 81.26087 * 9 7 2 12 12 N 1.47929 * 85.99882 * 138.00200 * 11 9 7 13 13 C 1.34771 * 134.50548 * 155.33590 * 12 11 9 14 14 O 1.21516 * 120.00277 * 176.94099 * 13 12 11 15 15 C 1.48156 * 120.00026 * 356.94530 * 13 12 11 16 16 C 1.39842 * 120.92046 * 7.36515 * 15 13 12 17 17 C 1.38121 * 119.00285 * 179.75648 * 16 15 13 18 18 N 1.31828 * 120.89474 * 0.53939 * 17 16 15 19 19 C 1.31792 * 122.05108 * 359.73606 * 18 17 16 20 20 C 1.50704 * 119.55583 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47398 * 179.97438 * 20 19 18 22 22 C 1.38173 * 120.89625 * 359.97438 * 19 18 17 23 23 C 1.47580 * 91.00565 * 335.35608 * 12 11 9 24 24 H 0.97004 * 120.00056 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99262 * 50.33267 * 10 9 7 26 26 H 1.09003 * 113.76622 * 252.35675 * 11 9 7 27 27 H 1.08998 * 113.77242 * 23.75591 * 11 9 7 28 28 H 1.07999 * 120.49580 * 0.02562 * 16 15 13 29 29 H 1.08001 * 119.55387 * 180.27253 * 17 16 15 30 30 H 1.09010 * 109.46767 * 299.97703 * 20 19 18 31 31 H 1.08996 * 109.47184 * 59.97262 * 20 19 18 32 32 H 0.96702 * 113.99963 * 179.97438 * 21 20 19 33 33 H 1.07999 * 120.50238 * 180.02562 * 22 19 18 34 34 H 1.08999 * 113.77316 * 270.33777 * 23 12 11 35 35 H 1.09003 * 113.87398 * 138.95203 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.2445 -2.5614 1.0132 11 6 0.7561 -2.9291 -1.3924 12 7 1.1904 -4.2911 -1.0121 13 6 0.8405 -5.5353 -1.3938 14 8 1.4227 -6.4981 -0.9348 15 6 -0.2541 -5.7294 -2.3732 16 6 -0.8339 -4.6384 -3.0283 17 6 -1.8485 -4.8653 -3.9378 18 7 -2.2772 -6.0876 -4.1826 19 6 -1.7623 -7.1425 -3.5834 20 6 -2.2952 -8.5147 -3.9063 21 8 -1.5881 -9.4926 -3.1409 22 6 -0.7399 -7.0076 -2.6638 23 6 2.1607 -3.7402 -0.0462 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3475 -1.7969 1.0267 26 1 -0.3213 -2.8308 -1.5255 27 1 1.3285 -2.4989 -2.2141 28 1 -0.4906 -3.6339 -2.8294 29 1 -2.2996 -4.0296 -4.4521 30 1 -3.3564 -8.5593 -3.6613 31 1 -2.1588 -8.7167 -4.9687 32 1 -1.8796 -10.4011 -3.2981 33 1 -0.3225 -7.8764 -2.1768 34 1 3.1449 -3.5476 -0.4733 35 1 2.2055 -4.2878 0.8952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556250025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:44 Heat of formation + Delta-G solvation = -48.653206 kcal Electronic energy + Delta-G solvation = -21322.855804 eV Core-core repulsion = 17901.868695 eV Total energy + Delta-G solvation = -3420.987108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53754 -39.26136 -37.36939 -36.91699 -34.09178 -32.67721 -32.28785 -31.60063 -28.74495 -26.88012 -25.76055 -25.45792 -23.55678 -22.46031 -20.12192 -18.85085 -17.74385 -17.57863 -16.78992 -16.32319 -15.67702 -15.41345 -15.25897 -14.90549 -14.75615 -14.57243 -14.16878 -13.90970 -13.46048 -13.07287 -12.71112 -12.56177 -12.06997 -12.02663 -11.64768 -11.58789 -11.14419 -10.99256 -10.56027 -10.54220 -10.36546 -9.99835 -9.68993 -9.48819 -9.29892 -8.90508 -8.84053 -8.45897 -7.96513 -6.46076 -4.56483 0.88875 1.15660 3.09922 3.19623 3.20957 3.23487 3.34057 3.62262 3.97716 4.13887 4.59157 4.70643 4.79226 4.81803 5.01974 5.20571 5.24450 5.31457 5.42587 5.56605 5.80291 5.85705 5.93404 6.09926 6.19307 6.31671 6.35581 6.51083 6.54183 6.71211 7.00228 7.38365 7.56572 7.74028 7.89741 8.29533 8.47578 8.59256 9.15027 9.34872 10.60812 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.004300 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.568492 B = 6509.617464 C = 7060.705250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.067 3.933 12 N -0.623 5.623 13 C 0.568 3.432 14 O -0.553 6.553 15 C -0.075 4.075 16 C -0.153 4.153 17 C 0.096 3.904 18 N -0.473 5.473 19 C 0.105 3.895 20 C 0.134 3.866 21 O -0.567 6.567 22 C -0.095 4.095 23 C 0.114 3.886 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.387 0.613 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 -8.520 -8.227 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.055 4.055 12 N -0.356 5.356 13 C 0.357 3.643 14 O -0.433 6.433 15 C -0.086 4.086 16 C -0.173 4.173 17 C -0.061 4.061 18 N -0.185 5.185 19 C -0.032 4.032 20 C 0.056 3.944 21 O -0.373 6.373 22 C -0.116 4.116 23 C -0.008 4.008 24 H 0.083 0.917 25 H 0.247 0.753 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.172 0.828 34 H 0.107 0.893 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.627 -9.245 -8.265 13.236 hybrid contribution 0.395 1.179 0.096 1.247 sum -4.232 -8.066 -8.169 12.235 Atomic orbital electron populations 1.69401 1.06168 1.28188 1.50001 1.25067 0.95034 0.99906 0.92969 0.86276 0.80118 0.82226 0.77901 1.19422 1.20645 1.20613 1.21532 0.94031 0.89802 1.52229 0.90877 1.19849 0.85654 0.91306 0.83381 1.86077 1.47046 1.49893 1.55295 1.24630 1.00225 0.77403 1.03238 1.50148 1.39804 1.04459 1.41164 1.17782 0.83017 0.82230 0.81264 1.90716 1.55687 1.39612 1.57260 1.20507 0.96763 0.94110 0.97180 1.23223 0.96711 1.01294 0.96023 1.22650 0.94155 0.93719 0.95576 1.67036 1.27851 0.99113 1.24466 1.20768 0.94111 0.94020 0.94311 1.20511 0.94769 0.84283 0.94864 1.86460 1.63803 1.19093 1.67918 1.22022 0.95406 0.97619 0.96503 1.23517 0.93319 0.92581 0.91348 0.91656 0.75279 0.90314 0.89350 0.82282 0.81878 0.91283 0.91320 0.76554 0.82838 0.89270 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.79 11.20 55.43 0.62 -21.17 16 2 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 3 Si 0.91 18.84 29.54 -169.99 -5.02 13.82 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -12.98 8.61 -34.44 -0.30 -13.28 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.54 1.40 -90.84 -0.13 5.42 16 10 O -0.57 -14.28 13.49 -35.23 -0.48 -14.76 16 11 C 0.07 1.37 6.04 -2.77 -0.02 1.35 16 12 N -0.62 -13.15 3.62 -179.00 -0.65 -13.79 16 13 C 0.57 12.13 8.01 -12.19 -0.10 12.04 16 14 O -0.55 -13.17 17.20 5.35 0.09 -13.08 16 15 C -0.07 -1.37 5.91 -104.64 -0.62 -1.99 16 16 C -0.15 -2.44 9.22 -39.02 -0.36 -2.80 16 17 C 0.10 1.35 11.17 -17.60 -0.20 1.15 16 18 N -0.47 -6.97 10.25 -9.52 -0.10 -7.07 16 19 C 0.11 1.55 6.78 -82.63 -0.56 0.99 16 20 C 0.13 1.42 7.59 36.01 0.27 1.70 16 21 O -0.57 -5.94 12.11 -35.23 -0.43 -6.36 16 22 C -0.09 -1.61 8.98 -39.02 -0.35 -1.97 16 23 C 0.11 2.44 8.23 -2.96 -0.02 2.41 16 24 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 25 H 0.39 9.84 6.60 45.56 0.30 10.14 16 26 H 0.08 1.57 6.23 -51.93 -0.32 1.25 16 27 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 28 H 0.16 2.50 3.93 -52.49 -0.21 2.30 16 29 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.39 1.86 9.12 45.56 0.42 2.28 16 33 H 0.15 2.72 6.70 -52.49 -0.35 2.36 16 34 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -30.03 303.41 -6.09 -36.13 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -2.24 Total: 15.04 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.47 Total: 6.67 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.12 Total: -42.03 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.81 Total: -34.20 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.03 -6.09 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556250025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.526 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds