Wall clock time and date at job start Tue Mar 31 2020 00:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48505 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47359 * 299.99422 * 3 2 1 6 6 H 1.48499 * 109.47412 * 60.00158 * 3 2 1 7 7 C 1.37876 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99639 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.94916 * 309.66371 * 9 7 2 11 11 C 1.53944 * 113.74229 * 81.26087 * 9 7 2 12 12 N 1.47929 * 85.99882 * 138.00200 * 11 9 7 13 13 C 1.34771 * 134.50548 * 155.33590 * 12 11 9 14 14 O 1.21516 * 120.00277 * 176.94099 * 13 12 11 15 15 C 1.48156 * 120.00026 * 356.94530 * 13 12 11 16 16 C 1.39842 * 120.92046 * 7.36515 * 15 13 12 17 17 C 1.38121 * 119.00285 * 179.75648 * 16 15 13 18 18 N 1.31828 * 120.89474 * 0.53939 * 17 16 15 19 19 C 1.31792 * 122.05108 * 359.73606 * 18 17 16 20 20 C 1.50704 * 119.55583 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47398 * 179.97438 * 20 19 18 22 22 C 1.38173 * 120.89625 * 359.97438 * 19 18 17 23 23 C 1.47580 * 91.00565 * 335.35608 * 12 11 9 24 24 H 0.97004 * 120.00056 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99262 * 50.33267 * 10 9 7 26 26 H 1.09003 * 113.76622 * 252.35675 * 11 9 7 27 27 H 1.08998 * 113.77242 * 23.75591 * 11 9 7 28 28 H 1.07999 * 120.49580 * 0.02562 * 16 15 13 29 29 H 1.08001 * 119.55387 * 180.27253 * 17 16 15 30 30 H 1.09010 * 109.46767 * 299.97703 * 20 19 18 31 31 H 1.08996 * 109.47184 * 59.97262 * 20 19 18 32 32 H 0.96702 * 113.99963 * 179.97438 * 21 20 19 33 33 H 1.07999 * 120.50238 * 180.02562 * 22 19 18 34 34 H 1.08999 * 113.77316 * 270.33777 * 23 12 11 35 35 H 1.09003 * 113.87398 * 138.95203 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.2445 -2.5614 1.0132 11 6 0.7561 -2.9291 -1.3924 12 7 1.1904 -4.2911 -1.0121 13 6 0.8405 -5.5353 -1.3938 14 8 1.4227 -6.4981 -0.9348 15 6 -0.2541 -5.7294 -2.3732 16 6 -0.8339 -4.6384 -3.0283 17 6 -1.8485 -4.8653 -3.9378 18 7 -2.2772 -6.0876 -4.1826 19 6 -1.7623 -7.1425 -3.5834 20 6 -2.2952 -8.5147 -3.9063 21 8 -1.5881 -9.4926 -3.1409 22 6 -0.7399 -7.0076 -2.6638 23 6 2.1607 -3.7402 -0.0462 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3475 -1.7969 1.0267 26 1 -0.3213 -2.8308 -1.5255 27 1 1.3285 -2.4989 -2.2141 28 1 -0.4906 -3.6339 -2.8294 29 1 -2.2996 -4.0296 -4.4521 30 1 -3.3564 -8.5593 -3.6613 31 1 -2.1588 -8.7167 -4.9687 32 1 -1.8796 -10.4011 -3.2981 33 1 -0.3225 -7.8764 -2.1768 34 1 3.1449 -3.5476 -0.4733 35 1 2.2055 -4.2878 0.8952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556250025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:43 Heat of formation + Delta-G solvation = -73.437260 kcal Electronic energy + Delta-G solvation = -21323.930521 eV Core-core repulsion = 17901.868695 eV Total energy + Delta-G solvation = -3422.061826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91351 -40.76783 -39.07476 -37.75205 -35.92113 -34.16408 -33.98397 -32.73011 -30.45366 -27.97319 -27.48094 -27.04134 -24.96074 -23.64501 -21.76639 -20.42828 -19.36450 -18.67569 -18.26728 -17.78578 -17.01958 -16.93874 -16.55525 -16.26731 -16.13132 -15.96669 -15.76964 -15.09449 -14.90419 -14.52650 -14.34215 -14.16516 -13.79496 -13.44005 -13.17334 -12.82593 -12.77640 -12.51838 -12.25256 -12.19149 -11.64896 -11.37614 -11.14776 -10.97320 -10.75323 -10.64955 -10.20112 -10.01016 -9.69667 -8.27208 -6.43809 -0.44050 -0.02876 1.46567 1.52179 1.61345 1.70806 1.72275 2.41295 2.68878 2.76503 2.94673 3.17297 3.62735 3.71144 3.75224 3.91381 4.07997 4.13345 4.21597 4.33147 4.47946 4.50923 4.53216 4.65081 4.72293 4.76223 4.86020 4.91203 5.04744 5.20142 5.49524 5.72658 5.90774 6.61953 6.62826 6.73173 6.90786 6.92170 7.29442 7.42611 8.79326 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.004300 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.568492 B = 6509.617464 C = 7060.705250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.038 3.962 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.083 3.917 12 N -0.625 5.625 13 C 0.561 3.439 14 O -0.588 6.588 15 C -0.096 4.096 16 C -0.157 4.157 17 C 0.107 3.893 18 N -0.472 5.472 19 C 0.108 3.892 20 C 0.136 3.864 21 O -0.589 6.589 22 C -0.111 4.111 23 C 0.111 3.889 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.202 0.798 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.410 0.590 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 -8.110 -9.990 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.164 4.164 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.180 3.820 10 O -0.398 6.398 11 C -0.038 4.038 12 N -0.357 5.357 13 C 0.352 3.648 14 O -0.471 6.471 15 C -0.107 4.107 16 C -0.177 4.177 17 C -0.050 4.050 18 N -0.183 5.183 19 C -0.029 4.029 20 C 0.058 3.942 21 O -0.399 6.399 22 C -0.132 4.132 23 C -0.010 4.010 24 H 0.086 0.914 25 H 0.243 0.757 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.178 0.822 29 H 0.219 0.781 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.262 0.738 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.579 -8.855 -10.041 14.504 hybrid contribution 0.653 1.005 0.655 1.366 sum -4.926 -7.851 -9.386 13.191 Atomic orbital electron populations 1.69453 1.06985 1.28949 1.49967 1.25685 0.95747 1.02373 0.92560 0.85362 0.78932 0.78769 0.77678 1.19364 1.20058 1.20982 1.21714 0.94182 0.90541 1.52974 0.90920 1.20103 0.85810 0.91723 0.84362 1.86066 1.47495 1.49784 1.56469 1.24500 1.00699 0.76587 1.02035 1.50181 1.39675 1.04809 1.40987 1.18330 0.83396 0.81654 0.81400 1.90678 1.57089 1.40512 1.58792 1.20395 0.96869 0.95691 0.97724 1.23237 0.97401 1.00493 0.96557 1.23250 0.92783 0.94677 0.94287 1.67225 1.27594 0.99297 1.24232 1.21411 0.92742 0.96074 0.92701 1.20632 0.95354 0.82180 0.96015 1.86417 1.64399 1.20803 1.68273 1.22008 0.96745 0.96625 0.97811 1.23573 0.94172 0.91906 0.91389 0.91359 0.75685 0.89831 0.87873 0.82204 0.78123 0.89202 0.88986 0.73824 0.84254 0.87414 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.74 11.20 21.45 0.24 -43.50 16 2 C 0.04 1.76 5.39 84.65 0.46 2.22 16 3 Si 0.97 37.87 29.54 68.60 2.03 39.90 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.56 -26.63 8.61 25.60 0.22 -26.40 16 8 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.22 10.25 1.40 -10.88 -0.02 10.24 16 10 O -0.59 -29.74 13.49 -148.98 -2.01 -31.75 16 11 C 0.08 3.36 6.04 86.42 0.52 3.88 16 12 N -0.62 -26.58 3.62 -842.34 -3.05 -29.63 16 13 C 0.56 24.48 8.01 86.88 0.70 25.18 16 14 O -0.59 -28.97 17.20 -3.76 -0.06 -29.04 16 15 C -0.10 -3.53 5.91 -19.88 -0.12 -3.65 16 16 C -0.16 -4.82 9.22 22.63 0.21 -4.62 16 17 C 0.11 2.71 11.17 84.67 0.95 3.66 16 18 N -0.47 -12.62 10.25 -184.04 -1.89 -14.50 16 19 C 0.11 2.99 6.78 42.55 0.29 3.27 16 20 C 0.14 2.53 7.59 71.24 0.54 3.07 16 21 O -0.59 -11.37 12.11 -148.98 -1.80 -13.17 16 22 C -0.11 -3.77 8.98 22.63 0.20 -3.57 16 23 C 0.11 4.82 8.23 86.49 0.71 5.53 16 24 H 0.28 12.52 8.31 -92.71 -0.77 11.75 16 25 H 0.39 19.77 6.60 -74.05 -0.49 19.28 16 26 H 0.08 3.28 6.23 -2.39 -0.01 3.27 16 27 H 0.10 3.84 8.09 -2.39 -0.02 3.82 16 28 H 0.16 4.81 3.93 -2.91 -0.01 4.80 16 29 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.41 3.10 9.12 -74.06 -0.68 2.42 16 33 H 0.14 5.07 6.70 -2.91 -0.02 5.05 16 34 H 0.11 4.19 8.09 -2.39 -0.02 4.17 16 35 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -64.21 303.41 -1.88 -66.09 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.00 Total: 36.78 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 4.66 Total: 18.82 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -4.69 Total: -87.63 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -3.88 Total: -73.96 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -64.21 -1.88 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556250025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds