Wall clock time and date at job start Tue Mar 31 2020 00:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48506 * 109.47447 * 266.07316 * 3 2 1 5 5 H 1.48500 * 109.47287 * 26.06919 * 3 2 1 6 6 H 1.48504 * 109.47386 * 146.07243 * 3 2 1 7 7 C 1.37878 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99586 * 353.91969 * 7 2 1 9 9 C 1.50700 * 120.00032 * 173.91575 * 7 2 1 10 10 O 1.42901 * 110.64093 * 325.51681 * 9 7 2 11 11 C 1.55160 * 110.72074 * 88.65735 * 9 7 2 12 12 C 1.54914 * 101.57932 * 154.04056 * 11 9 7 13 13 N 1.47419 * 104.83268 * 322.99146 * 12 11 9 14 14 C 1.34779 * 125.65059 * 204.08784 * 13 12 11 15 15 O 1.21547 * 120.00408 * 180.02562 * 14 13 12 16 16 C 1.47923 * 119.99464 * 0.03020 * 14 13 12 17 17 C 1.39476 * 119.65490 * 179.97438 * 16 14 13 18 18 C 1.38322 * 119.13124 * 179.97438 * 17 16 14 19 19 C 1.39232 * 118.44515 * 359.97438 * 18 17 16 20 20 O 1.35732 * 120.38071 * 180.02562 * 19 18 17 21 21 C 1.39236 * 119.23705 * 0.03787 * 19 18 17 22 22 N 1.31378 * 120.80410 * 359.95982 * 21 19 18 23 23 C 1.47021 * 108.70325 * 24.35938 * 13 12 11 24 24 H 0.96994 * 120.00322 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00069 * 297.55810 * 10 9 7 26 26 H 1.09000 * 110.99825 * 35.96971 * 11 9 7 27 27 H 1.08998 * 111.00499 * 272.12065 * 11 9 7 28 28 H 1.08999 * 110.36331 * 204.15252 * 12 11 9 29 29 H 1.08997 * 110.45814 * 81.87898 * 12 11 9 30 30 H 1.07998 * 120.43600 * 359.70839 * 17 16 14 31 31 H 1.08001 * 120.78171 * 179.97438 * 18 17 16 32 32 H 0.96700 * 113.99707 * 269.99626 * 20 19 18 33 33 H 1.07995 * 119.59476 * 179.97438 * 21 19 18 34 34 H 1.09000 * 109.88718 * 118.13250 * 23 13 12 35 35 H 1.09001 * 109.87960 * 239.29274 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5796 1.9986 -1.3968 5 1 1.4074 2.6753 0.6153 6 1 3.5027 1.4658 0.7814 7 6 2.0046 -1.1940 0.0005 8 1 1.4692 -2.1266 0.1000 9 6 3.5053 -1.1976 -0.1378 10 8 3.9346 -0.1386 -0.9958 11 6 4.1850 -1.0874 1.2526 12 6 5.5509 -1.7679 0.9858 13 7 5.2464 -2.8764 0.0630 14 6 5.9835 -3.9940 -0.0926 15 8 5.6357 -4.8458 -0.8868 16 6 7.2158 -4.1838 0.7033 17 6 7.9730 -5.3433 0.5370 18 6 9.1237 -5.5094 1.2864 19 6 9.4824 -4.5056 2.1822 20 8 10.6039 -4.6277 2.9369 21 6 8.6772 -3.3753 2.2950 22 7 7.5902 -3.2483 1.5682 23 6 4.0089 -2.5581 -0.6643 24 1 -0.4850 0.8400 0.0004 25 1 3.6060 -0.2092 -1.9025 26 1 3.6186 -1.6314 2.0085 27 1 4.3176 -0.0447 1.5412 28 1 5.9710 -2.1524 1.9151 29 1 6.2419 -1.0654 0.5199 30 1 7.6627 -6.1034 -0.1646 31 1 9.7297 -6.3969 1.1794 32 1 10.4591 -5.0607 3.7893 33 1 8.9498 -2.5934 2.9883 34 1 4.2135 -2.4916 -1.7328 35 1 3.2597 -3.3270 -0.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557188805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:43 Heat of formation + Delta-G solvation = -69.425880 kcal Electronic energy + Delta-G solvation = -21553.703420 eV Core-core repulsion = 18131.815541 eV Total energy + Delta-G solvation = -3421.887879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91462 -39.38639 -37.81768 -37.21546 -34.80403 -32.59833 -32.35383 -30.99796 -29.93522 -28.25765 -25.71583 -24.25939 -23.64502 -22.30544 -20.16096 -19.59780 -18.89277 -17.71768 -17.33972 -16.98297 -15.94674 -15.47214 -15.36822 -15.15555 -14.76129 -14.54221 -13.83599 -13.64309 -13.46850 -13.30761 -12.94045 -12.66789 -12.34597 -12.12595 -12.00101 -11.46737 -11.40917 -10.98150 -10.49413 -10.32157 -10.20504 -10.10650 -10.04975 -9.32455 -9.20403 -9.17459 -8.64084 -8.50618 -8.13129 -6.18997 -4.30922 0.35616 0.90829 2.71932 3.21920 3.45742 3.52166 3.56372 3.67782 3.77152 4.08756 4.47269 4.48846 4.57782 4.76418 4.96864 5.06167 5.21393 5.43979 5.47872 5.61275 5.66710 5.86544 5.91760 6.05959 6.11526 6.33074 6.50809 6.65006 6.75985 6.84118 7.08059 7.12287 7.45132 7.50870 7.89820 8.12960 8.37886 8.64662 8.82483 9.42077 10.90061 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.004466 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.927796 B = 6267.584481 C = 6764.872464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.945 3.055 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.218 3.782 10 O -0.563 6.563 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.585 5.585 14 C 0.572 3.428 15 O -0.547 6.547 16 C 0.082 3.918 17 C -0.096 4.096 18 C -0.110 4.110 19 C 0.071 3.929 20 O -0.491 6.491 21 C 0.075 3.925 22 N -0.431 5.431 23 C 0.090 3.910 24 H 0.267 0.733 25 H 0.372 0.628 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.395 0.605 33 H 0.167 0.833 34 H 0.062 0.938 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.392 -7.772 5.896 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.780 3.220 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.098 0.902 9 C 0.178 3.822 10 O -0.371 6.371 11 C -0.165 4.165 12 C -0.021 4.021 13 N -0.315 5.315 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.056 4.056 17 C -0.117 4.117 18 C -0.136 4.136 19 C 0.024 3.976 20 O -0.301 6.301 21 C -0.085 4.085 22 N -0.144 5.144 23 C -0.032 4.032 24 H 0.076 0.924 25 H 0.220 0.780 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.252 0.748 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.103 -6.995 5.603 20.200 hybrid contribution 0.462 -0.332 -0.161 0.591 sum 18.564 -7.327 5.442 20.687 Atomic orbital electron populations 1.69962 1.06839 1.27812 1.47711 1.25100 0.94859 1.00419 0.92584 0.85799 0.77984 0.80090 0.78175 1.21813 1.25564 1.19218 1.21188 0.88412 0.95449 1.53997 0.90169 1.20137 0.93971 0.81198 0.86912 1.86137 1.76582 1.49872 1.24531 1.23199 0.93771 1.01219 0.98288 1.22748 0.97909 0.87624 0.93793 1.48439 1.24901 1.18019 1.40177 1.17393 0.82393 0.81614 0.82709 1.90773 1.71078 1.42958 1.37749 1.21324 0.96440 0.91835 0.96009 1.22066 0.93293 0.97810 0.98525 1.21924 0.96263 0.99257 0.96188 1.19785 0.87751 0.94947 0.95108 1.84782 1.29245 1.82458 1.33625 1.23317 0.89652 0.97186 0.98355 1.67990 1.14099 1.28150 1.04132 1.22978 0.84318 1.00248 0.95614 0.92383 0.77992 0.89881 0.89884 0.88748 0.91806 0.82961 0.83598 0.74766 0.81556 0.92008 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.94 22.97 24.83 -169.99 -4.22 18.75 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.32 -8.11 7.11 56.52 0.40 -7.71 16 6 H -0.27 -6.28 5.19 56.52 0.29 -5.99 16 7 C -0.55 -14.67 8.82 -34.44 -0.30 -14.97 16 8 H 0.08 2.33 7.81 -52.49 -0.41 1.92 16 9 C 0.22 4.84 0.68 -89.93 -0.06 4.78 16 10 O -0.56 -12.17 8.74 -35.23 -0.31 -12.47 16 11 C -0.13 -2.55 5.88 -24.58 -0.14 -2.69 16 12 C 0.10 1.79 5.92 -2.53 -0.01 1.78 16 13 N -0.59 -11.17 3.33 -171.60 -0.57 -11.74 16 14 C 0.57 10.56 7.83 -12.29 -0.10 10.46 16 15 O -0.55 -11.29 16.64 5.32 0.09 -11.20 16 16 C 0.08 1.22 6.72 -83.02 -0.56 0.66 16 17 C -0.10 -1.14 9.62 -39.09 -0.38 -1.52 16 18 C -0.11 -1.01 10.12 -39.18 -0.40 -1.41 16 19 C 0.07 0.65 6.75 -38.84 -0.26 0.39 16 20 O -0.49 -3.48 13.52 -18.90 -0.26 -3.73 16 21 C 0.08 0.78 11.14 -17.37 -0.19 0.59 16 22 N -0.43 -5.86 6.57 -9.68 -0.06 -5.92 16 23 C 0.09 1.88 6.22 -3.06 -0.02 1.86 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.37 7.15 8.97 45.56 0.41 7.56 16 26 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 27 H 0.08 1.70 6.23 -51.93 -0.32 1.37 16 28 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.15 1.72 7.63 -52.49 -0.40 1.32 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.40 0.82 9.06 45.56 0.41 1.23 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 35 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -33.51 294.05 -5.01 -38.52 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -2.36 Total: 6.93 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.52 Total: 1.90 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.14 Total: -43.13 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.47 Total: -27.41 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.22 Total: 18.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.51 -5.01 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557188805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.906 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds