Wall clock time and date at job start Tue Mar 31 2020 00:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48506 * 109.47447 * 266.07316 * 3 2 1 5 5 H 1.48500 * 109.47287 * 26.06919 * 3 2 1 6 6 H 1.48504 * 109.47386 * 146.07243 * 3 2 1 7 7 C 1.37878 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99586 * 353.91969 * 7 2 1 9 9 C 1.50700 * 120.00032 * 173.91575 * 7 2 1 10 10 O 1.42901 * 110.64093 * 325.51681 * 9 7 2 11 11 C 1.55160 * 110.72074 * 88.65735 * 9 7 2 12 12 C 1.54914 * 101.57932 * 154.04056 * 11 9 7 13 13 N 1.47419 * 104.83268 * 322.99146 * 12 11 9 14 14 C 1.34779 * 125.65059 * 204.08784 * 13 12 11 15 15 O 1.21547 * 120.00408 * 180.02562 * 14 13 12 16 16 C 1.47923 * 119.99464 * 0.03020 * 14 13 12 17 17 C 1.39476 * 119.65490 * 179.97438 * 16 14 13 18 18 C 1.38322 * 119.13124 * 179.97438 * 17 16 14 19 19 C 1.39232 * 118.44515 * 359.97438 * 18 17 16 20 20 O 1.35732 * 120.38071 * 180.02562 * 19 18 17 21 21 C 1.39236 * 119.23705 * 0.03787 * 19 18 17 22 22 N 1.31378 * 120.80410 * 359.95982 * 21 19 18 23 23 C 1.47021 * 108.70325 * 24.35938 * 13 12 11 24 24 H 0.96994 * 120.00322 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00069 * 297.55810 * 10 9 7 26 26 H 1.09000 * 110.99825 * 35.96971 * 11 9 7 27 27 H 1.08998 * 111.00499 * 272.12065 * 11 9 7 28 28 H 1.08999 * 110.36331 * 204.15252 * 12 11 9 29 29 H 1.08997 * 110.45814 * 81.87898 * 12 11 9 30 30 H 1.07998 * 120.43600 * 359.70839 * 17 16 14 31 31 H 1.08001 * 120.78171 * 179.97438 * 18 17 16 32 32 H 0.96700 * 113.99707 * 269.99626 * 20 19 18 33 33 H 1.07995 * 119.59476 * 179.97438 * 21 19 18 34 34 H 1.09000 * 109.88718 * 118.13250 * 23 13 12 35 35 H 1.09001 * 109.87960 * 239.29274 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5796 1.9986 -1.3968 5 1 1.4074 2.6753 0.6153 6 1 3.5027 1.4658 0.7814 7 6 2.0046 -1.1940 0.0005 8 1 1.4692 -2.1266 0.1000 9 6 3.5053 -1.1976 -0.1378 10 8 3.9346 -0.1386 -0.9958 11 6 4.1850 -1.0874 1.2526 12 6 5.5509 -1.7679 0.9858 13 7 5.2464 -2.8764 0.0630 14 6 5.9835 -3.9940 -0.0926 15 8 5.6357 -4.8458 -0.8868 16 6 7.2158 -4.1838 0.7033 17 6 7.9730 -5.3433 0.5370 18 6 9.1237 -5.5094 1.2864 19 6 9.4824 -4.5056 2.1822 20 8 10.6039 -4.6277 2.9369 21 6 8.6772 -3.3753 2.2950 22 7 7.5902 -3.2483 1.5682 23 6 4.0089 -2.5581 -0.6643 24 1 -0.4850 0.8400 0.0004 25 1 3.6060 -0.2092 -1.9025 26 1 3.6186 -1.6314 2.0085 27 1 4.3176 -0.0447 1.5412 28 1 5.9710 -2.1524 1.9151 29 1 6.2419 -1.0654 0.5199 30 1 7.6627 -6.1034 -0.1646 31 1 9.7297 -6.3969 1.1794 32 1 10.4591 -5.0607 3.7893 33 1 8.9498 -2.5934 2.9883 34 1 4.2135 -2.4916 -1.7328 35 1 3.2597 -3.3270 -0.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557188805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:42 Heat of formation + Delta-G solvation = -97.789784 kcal Electronic energy + Delta-G solvation = -21554.933371 eV Core-core repulsion = 18131.815541 eV Total energy + Delta-G solvation = -3423.117830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91970 -40.68876 -39.23328 -38.11533 -36.43188 -34.46366 -33.44325 -32.26429 -31.23883 -29.90567 -27.42855 -25.40141 -24.59146 -23.72281 -21.67336 -21.12579 -19.58105 -19.51944 -18.66518 -18.00250 -17.12829 -16.90219 -16.81828 -16.58495 -16.37091 -15.61043 -15.25693 -14.99552 -14.65291 -14.48685 -14.27098 -14.05542 -13.98730 -13.74273 -13.27228 -13.23048 -12.80122 -12.46773 -12.27265 -12.19645 -11.82988 -11.40712 -11.20529 -10.99064 -10.65315 -10.43700 -10.28500 -10.08242 -9.61642 -8.34693 -6.49434 -0.54256 0.13211 1.51923 1.53879 1.56756 1.73583 1.87821 2.45418 2.66308 2.89459 2.97857 3.14767 3.47538 3.63065 3.82946 3.89455 3.93612 4.05589 4.16898 4.37160 4.44162 4.67224 4.74532 4.83070 4.84426 4.95426 5.08489 5.17450 5.23960 5.38056 5.47239 5.53112 6.03868 6.42512 6.56191 6.57454 6.75110 6.93012 6.99667 7.28632 8.78565 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.004466 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.927796 B = 6267.584481 C = 6764.872464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.028 3.972 3 Si 1.005 2.995 4 H -0.281 1.281 5 H -0.333 1.333 6 H -0.250 1.250 7 C -0.552 4.552 8 H 0.039 0.961 9 C 0.219 3.781 10 O -0.561 6.561 11 C -0.125 4.125 12 C 0.117 3.883 13 N -0.593 5.593 14 C 0.569 3.431 15 O -0.580 6.580 16 C 0.048 3.952 17 C -0.094 4.094 18 C -0.104 4.104 19 C 0.098 3.902 20 O -0.492 6.492 21 C 0.071 3.929 22 N -0.450 5.450 23 C 0.098 3.902 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.178 0.822 32 H 0.422 0.578 33 H 0.194 0.806 34 H 0.064 0.936 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.296 -7.612 7.216 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.172 4.172 3 Si 0.837 3.163 4 H -0.208 1.208 5 H -0.265 1.265 6 H -0.175 1.175 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.179 3.821 10 O -0.370 6.370 11 C -0.163 4.163 12 C -0.004 4.004 13 N -0.324 5.324 14 C 0.358 3.642 15 O -0.461 6.461 16 C -0.088 4.088 17 C -0.115 4.115 18 C -0.129 4.129 19 C 0.050 3.950 20 O -0.306 6.306 21 C -0.090 4.090 22 N -0.163 5.163 23 C -0.025 4.025 24 H 0.077 0.923 25 H 0.232 0.768 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.196 0.804 32 H 0.284 0.716 33 H 0.211 0.789 34 H 0.082 0.918 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.034 -6.864 6.939 24.099 hybrid contribution -0.635 -0.525 -0.491 0.960 sum 21.398 -7.389 6.448 23.539 Atomic orbital electron populations 1.70082 1.08631 1.28671 1.50070 1.25876 0.95323 1.03733 0.92311 0.84824 0.76991 0.75776 0.78735 1.20762 1.26545 1.17520 1.21389 0.90942 0.93755 1.52925 0.94274 1.19959 0.91492 0.82197 0.88476 1.86091 1.76243 1.49382 1.25260 1.23128 0.95026 1.01712 0.96461 1.22699 0.96196 0.87039 0.94486 1.48479 1.24411 1.18973 1.40504 1.18041 0.83186 0.80524 0.82431 1.90735 1.72269 1.43816 1.39305 1.20799 0.96056 0.93973 0.97975 1.22104 0.93910 0.96711 0.98764 1.22206 0.95285 1.00358 0.95084 1.19756 0.87071 0.93893 0.94244 1.84728 1.27951 1.82836 1.35048 1.23750 0.88849 0.98421 0.98013 1.67773 1.15755 1.28205 1.04532 1.22642 0.85073 0.98777 0.96042 0.92288 0.76831 0.90477 0.89549 0.86649 0.91185 0.83131 0.80432 0.71638 0.78932 0.91761 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.03 1.55 5.46 84.66 0.46 2.01 16 3 Si 1.00 47.07 24.83 68.60 1.70 48.77 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.33 -16.07 7.11 99.48 0.71 -15.37 16 6 H -0.25 -10.98 5.19 99.48 0.52 -10.47 16 7 C -0.55 -30.24 8.82 25.60 0.23 -30.01 16 8 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 9 C 0.22 9.76 0.68 -10.35 -0.01 9.75 16 10 O -0.56 -23.42 8.74 -148.98 -1.30 -24.72 16 11 C -0.13 -4.92 5.88 31.99 0.19 -4.73 16 12 C 0.12 3.97 5.92 86.86 0.51 4.48 16 13 N -0.59 -22.62 3.33 -815.10 -2.71 -25.33 16 14 C 0.57 21.07 7.83 86.81 0.68 21.75 16 15 O -0.58 -24.55 16.64 -3.86 -0.06 -24.62 16 16 C 0.05 1.37 6.72 41.86 0.28 1.65 16 17 C -0.09 -2.06 9.62 22.59 0.22 -1.84 16 18 C -0.10 -1.51 10.12 22.53 0.23 -1.28 16 19 C 0.10 1.35 6.75 22.75 0.15 1.50 16 20 O -0.49 -4.38 13.52 -90.55 -1.22 -5.61 16 21 C 0.07 1.21 11.14 85.00 0.95 2.15 16 22 N -0.45 -11.15 6.57 -184.53 -1.21 -12.36 16 23 C 0.10 4.16 6.22 86.73 0.54 4.70 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.38 14.23 8.97 -74.06 -0.66 13.57 16 26 H 0.08 3.09 8.04 -2.39 -0.02 3.08 16 27 H 0.09 3.34 6.23 -2.39 -0.01 3.33 16 28 H 0.12 3.45 5.88 -2.39 -0.01 3.44 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.15 3.27 7.63 -2.91 -0.02 3.25 16 31 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.42 -0.56 9.06 -74.06 -0.67 -1.23 16 33 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 35 H 0.05 2.47 7.66 -2.39 -0.02 2.45 16 Total: -1.00 -74.51 294.05 -0.45 -74.96 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.37 Total: 15.57 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.43 Total: 10.14 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -3.62 Total: -94.49 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.59 Total: -54.95 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.70 Total: 48.77 kcal Total: -74.51 -0.45 -74.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557188805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.826 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds