Wall clock time and date at job start Tue Mar 31 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47095 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47221 * 30.00365 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21516 * 120.00144 * 179.97438 * 14 13 12 16 16 C 1.48153 * 120.00045 * 359.97438 * 14 13 12 17 17 C 1.39169 * 119.69125 * 179.72480 * 16 14 13 18 18 C 1.38738 * 119.18569 * 179.73703 * 17 16 14 19 19 C 1.38378 * 118.55742 * 0.52541 * 18 17 16 20 20 C 1.39244 * 119.30582 * 359.74086 * 19 18 17 21 21 O 1.35666 * 119.61086 * 180.02562 * 20 19 18 22 22 N 1.31927 * 120.76423 * 359.97438 * 20 19 18 23 23 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 24 24 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 26 26 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 27 27 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 28 28 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 29 29 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 30 30 H 1.08004 * 120.40876 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.72278 * 180.27079 * 18 17 16 32 32 H 1.07994 * 120.34410 * 179.75534 * 19 18 17 33 33 H 0.96699 * 113.99566 * 269.96631 * 21 20 19 34 34 H 1.09003 * 109.87825 * 241.63649 * 23 13 12 35 35 H 1.09001 * 109.88209 * 120.47703 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6965 -3.9113 -3.5542 16 6 0.1454 -6.0462 -3.1013 17 6 -0.4460 -6.5982 -4.2337 18 6 -0.2638 -7.9470 -4.5028 19 6 0.4949 -8.7002 -3.6243 20 6 1.0538 -8.0858 -2.5066 21 8 1.7991 -8.8183 -1.6415 22 7 0.8677 -6.7995 -2.2799 23 6 0.4282 -2.6578 -1.2974 24 1 -0.4850 0.8400 0.0004 25 1 -0.2247 -1.8680 1.2334 26 1 3.0948 -3.4670 -0.6886 27 1 2.5461 -3.9997 0.9358 28 1 1.9712 -5.5343 -1.2166 29 1 0.7139 -5.2644 0.0276 30 1 -1.0365 -5.9834 -4.8969 31 1 -0.7078 -8.4001 -5.3769 32 1 0.6521 -9.7535 -3.8037 33 1 1.2889 -9.2182 -0.9239 34 1 -0.6140 -2.4001 -1.1087 35 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570694968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:51 Heat of formation + Delta-G solvation = -72.517065 kcal Electronic energy + Delta-G solvation = -21726.693673 eV Core-core repulsion = 18304.671750 eV Total energy + Delta-G solvation = -3422.021923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76718 -39.07704 -37.43727 -36.77264 -34.35364 -32.75526 -32.16774 -30.57321 -29.88495 -27.76140 -25.72465 -24.21172 -23.28420 -22.30913 -20.02428 -19.43543 -18.40466 -17.30737 -17.03393 -16.49788 -16.05007 -15.58605 -15.29721 -14.81719 -14.71054 -14.31312 -13.68745 -13.23432 -12.95214 -12.89762 -12.71731 -12.41144 -12.03378 -11.89930 -11.59817 -11.42491 -11.03979 -10.75559 -10.55187 -10.49447 -10.22123 -10.12199 -9.96006 -9.30856 -9.12166 -9.03664 -8.63094 -8.29356 -7.83727 -6.27015 -4.35621 0.56068 0.98025 2.88098 3.22415 3.29900 3.31183 3.33594 3.59813 3.87947 4.28458 4.41583 4.72316 4.79982 4.88680 5.01059 5.24330 5.33293 5.62325 5.74595 5.88084 5.93411 6.03336 6.16042 6.25639 6.49562 6.62796 6.84606 6.92426 7.01463 7.28182 7.29425 7.39658 7.64381 7.75348 8.02985 8.19188 8.61605 8.69327 9.33029 9.43537 10.80639 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.004675 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.477801 B = 5988.304838 C = 6487.033533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.123 4.123 12 C 0.106 3.894 13 N -0.584 5.584 14 C 0.565 3.435 15 O -0.546 6.546 16 C 0.120 3.880 17 C -0.127 4.127 18 C -0.067 4.067 19 C -0.173 4.173 20 C 0.305 3.695 21 O -0.480 6.480 22 N -0.469 5.469 23 C 0.100 3.900 24 H 0.270 0.730 25 H 0.384 0.616 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -16.406 -5.264 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.161 4.161 12 C -0.017 4.017 13 N -0.314 5.314 14 C 0.351 3.649 15 O -0.424 6.424 16 C -0.018 4.018 17 C -0.147 4.147 18 C -0.093 4.093 19 C -0.194 4.194 20 C 0.124 3.876 21 O -0.287 6.287 22 N -0.191 5.191 23 C -0.021 4.021 24 H 0.080 0.920 25 H 0.235 0.765 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.342 -15.949 -5.199 16.779 hybrid contribution -0.606 0.829 -0.487 1.137 sum -0.263 -15.120 -5.686 16.156 Atomic orbital electron populations 1.69646 1.06002 1.27934 1.49947 1.25085 0.95055 0.99775 0.93394 0.86394 0.79814 0.82373 0.78290 1.20419 1.20984 1.19667 1.21545 0.93763 0.90113 1.52094 0.91465 1.19495 0.86171 0.92289 0.81312 1.86096 1.53576 1.52643 1.47106 1.22832 0.97623 0.95290 1.00317 1.22623 0.93413 0.95017 0.90611 1.48673 1.48054 1.12688 1.21968 1.17479 0.80889 0.85114 0.81435 1.90764 1.41698 1.61180 1.48802 1.21165 0.94295 0.94426 0.91914 1.22160 0.99575 0.95717 0.97296 1.21516 0.95867 0.93211 0.98669 1.22283 0.98779 1.01919 0.96448 1.19242 0.90786 0.87205 0.90393 1.84797 1.35831 1.66122 1.41970 1.67466 1.14036 1.06259 1.31318 1.23124 1.01941 0.77620 0.99414 0.91963 0.76537 0.90748 0.90613 0.88932 0.92043 0.83002 0.83688 0.83959 0.74128 0.91406 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 10.97 55.43 0.61 -23.43 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.25 8.12 -34.44 -0.28 -14.53 16 8 H 0.07 1.76 7.77 -52.49 -0.41 1.35 16 9 C 0.25 6.15 0.86 -89.94 -0.08 6.08 16 10 O -0.58 -15.04 13.09 -35.23 -0.46 -15.50 16 11 C -0.12 -2.59 6.22 -24.59 -0.15 -2.75 16 12 C 0.11 2.08 5.93 -2.53 -0.02 2.06 16 13 N -0.58 -12.77 3.33 -171.52 -0.57 -13.34 16 14 C 0.57 11.78 7.84 -12.19 -0.10 11.68 16 15 O -0.55 -12.67 16.64 5.35 0.09 -12.58 16 16 C 0.12 2.00 6.72 -83.03 -0.56 1.44 16 17 C -0.13 -1.65 9.63 -39.05 -0.38 -2.03 16 18 C -0.07 -0.63 10.16 -39.35 -0.40 -1.03 16 19 C -0.17 -1.64 10.05 -39.16 -0.39 -2.03 16 20 C 0.30 3.72 7.74 -17.14 -0.13 3.59 16 21 O -0.48 -4.95 13.56 -18.70 -0.25 -5.21 16 22 N -0.47 -7.27 6.62 -9.88 -0.07 -7.33 16 23 C 0.10 2.49 5.39 -3.07 -0.02 2.48 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.38 10.08 7.17 45.56 0.33 10.41 16 26 H 0.07 1.52 8.04 -51.93 -0.42 1.11 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.09 1.69 5.88 -51.93 -0.31 1.39 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.15 1.90 7.63 -52.48 -0.40 1.50 16 31 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.40 2.14 9.06 45.56 0.41 2.55 16 34 H 0.07 1.82 8.01 -51.93 -0.42 1.40 16 35 H 0.07 1.84 7.82 -51.93 -0.41 1.43 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -31.58 301.08 -6.17 -37.75 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -2.44 Total: 12.81 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.59 Total: 6.70 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.03 Total: -44.09 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.63 Total: -33.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.58 -6.17 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.768 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds