Wall clock time and date at job start Tue Mar 31 2020 00:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47095 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47221 * 30.00365 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21516 * 120.00144 * 179.97438 * 14 13 12 16 16 C 1.48153 * 120.00045 * 359.97438 * 14 13 12 17 17 C 1.39169 * 119.69125 * 179.72480 * 16 14 13 18 18 C 1.38738 * 119.18569 * 179.73703 * 17 16 14 19 19 C 1.38378 * 118.55742 * 0.52541 * 18 17 16 20 20 C 1.39244 * 119.30582 * 359.74086 * 19 18 17 21 21 O 1.35666 * 119.61086 * 180.02562 * 20 19 18 22 22 N 1.31927 * 120.76423 * 359.97438 * 20 19 18 23 23 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 24 24 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 25 25 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 26 26 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 27 27 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 28 28 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 29 29 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 30 30 H 1.08004 * 120.40876 * 359.97438 * 17 16 14 31 31 H 1.08004 * 120.72278 * 180.27079 * 18 17 16 32 32 H 1.07994 * 120.34410 * 179.75534 * 19 18 17 33 33 H 0.96699 * 113.99566 * 269.96631 * 21 20 19 34 34 H 1.09003 * 109.87825 * 241.63649 * 23 13 12 35 35 H 1.09001 * 109.88209 * 120.47703 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6965 -3.9113 -3.5542 16 6 0.1454 -6.0462 -3.1013 17 6 -0.4460 -6.5982 -4.2337 18 6 -0.2638 -7.9470 -4.5028 19 6 0.4949 -8.7002 -3.6243 20 6 1.0538 -8.0858 -2.5066 21 8 1.7991 -8.8183 -1.6415 22 7 0.8677 -6.7995 -2.2799 23 6 0.4282 -2.6578 -1.2974 24 1 -0.4850 0.8400 0.0004 25 1 -0.2247 -1.8680 1.2334 26 1 3.0948 -3.4670 -0.6886 27 1 2.5461 -3.9997 0.9358 28 1 1.9712 -5.5343 -1.2166 29 1 0.7139 -5.2644 0.0276 30 1 -1.0365 -5.9834 -4.8969 31 1 -0.7078 -8.4001 -5.3769 32 1 0.6521 -9.7535 -3.8037 33 1 1.2889 -9.2182 -0.9239 34 1 -0.6140 -2.4001 -1.1087 35 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570694968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:50 Heat of formation + Delta-G solvation = -99.365357 kcal Electronic energy + Delta-G solvation = -21727.857902 eV Core-core repulsion = 18304.671750 eV Total energy + Delta-G solvation = -3423.186152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89287 -40.57530 -39.04718 -37.83104 -36.19891 -34.22366 -33.75814 -31.90815 -31.32300 -29.61482 -27.46634 -25.62591 -24.22883 -23.86556 -21.56877 -21.12336 -19.41885 -19.17653 -18.59367 -17.49292 -17.29710 -16.98208 -16.84382 -16.54327 -16.14878 -15.92502 -15.00715 -14.79243 -14.77463 -14.32786 -14.07339 -13.80386 -13.51452 -13.38085 -13.10126 -12.89593 -12.78047 -12.49320 -12.32442 -12.30097 -12.10265 -11.60152 -11.18317 -11.00979 -10.70765 -10.34615 -10.25937 -10.07142 -9.58998 -8.28672 -6.45375 -0.45911 0.12007 1.40820 1.42390 1.52853 1.60527 1.91774 2.36647 2.49256 2.73131 2.97480 3.31002 3.77232 3.82819 3.91952 4.03598 4.09162 4.20464 4.31625 4.45374 4.54568 4.64266 4.86217 4.96088 4.97810 5.06059 5.11648 5.26928 5.33775 5.44665 5.49320 5.71683 6.01540 6.46924 6.55067 6.63025 6.76029 7.02629 7.26054 7.33943 8.77791 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.004675 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.477801 B = 5988.304838 C = 6487.033533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.235 3.765 10 O -0.588 6.588 11 C -0.118 4.118 12 C 0.122 3.878 13 N -0.595 5.595 14 C 0.559 3.441 15 O -0.583 6.583 16 C 0.086 3.914 17 C -0.127 4.127 18 C -0.050 4.050 19 C -0.146 4.146 20 C 0.298 3.702 21 O -0.486 6.486 22 N -0.499 5.499 23 C 0.118 3.882 24 H 0.272 0.728 25 H 0.377 0.623 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.186 0.814 33 H 0.422 0.578 34 H 0.036 0.964 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -19.268 -6.129 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.792 3.208 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.085 0.915 9 C 0.195 3.805 10 O -0.396 6.396 11 C -0.156 4.156 12 C 0.000 4.000 13 N -0.325 5.325 14 C 0.348 3.652 15 O -0.464 6.464 16 C -0.050 4.050 17 C -0.148 4.148 18 C -0.075 4.075 19 C -0.167 4.167 20 C 0.116 3.884 21 O -0.296 6.296 22 N -0.221 5.221 23 C -0.005 4.005 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.209 0.791 32 H 0.203 0.797 33 H 0.283 0.717 34 H 0.054 0.946 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.204 -18.852 -6.045 19.834 hybrid contribution -0.892 1.550 -0.252 1.806 sum 0.311 -17.302 -6.297 18.415 Atomic orbital electron populations 1.69751 1.07148 1.28646 1.50091 1.25842 0.95840 1.02876 0.92896 0.85422 0.78795 0.78472 0.78160 1.20385 1.20448 1.18947 1.21840 0.93987 0.91293 1.52690 0.91459 1.19679 0.86592 0.93548 0.80707 1.86082 1.53595 1.52335 1.47635 1.22841 0.97187 0.94137 1.01391 1.22587 0.92937 0.94413 0.90076 1.48732 1.49178 1.11487 1.23141 1.18314 0.79442 0.87276 0.80197 1.90713 1.43054 1.62911 1.49744 1.20479 0.98046 0.92004 0.94471 1.22284 0.98960 0.97616 0.95938 1.21999 0.94713 0.91156 0.99632 1.22740 0.96042 1.03713 0.94187 1.19555 0.90847 0.86341 0.91655 1.84768 1.36410 1.65668 1.42757 1.67147 1.14885 1.08128 1.31966 1.22633 0.99654 0.79479 0.98769 0.91881 0.77267 0.90228 0.89317 0.87057 0.92055 0.83274 0.79061 0.79698 0.71689 0.94581 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.86 10.97 21.45 0.24 -50.63 16 2 C 0.03 1.41 5.27 84.65 0.45 1.85 16 3 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.56 -30.46 8.12 25.60 0.21 -30.25 16 8 H 0.07 3.56 7.77 -2.91 -0.02 3.54 16 9 C 0.24 12.06 0.86 -10.36 -0.01 12.05 16 10 O -0.59 -31.23 13.09 -148.98 -1.95 -33.18 16 11 C -0.12 -5.01 6.22 31.98 0.20 -4.81 16 12 C 0.12 4.80 5.93 86.86 0.51 5.32 16 13 N -0.60 -27.11 3.33 -814.86 -2.71 -29.82 16 14 C 0.56 24.26 7.84 86.88 0.68 24.94 16 15 O -0.58 -28.58 16.64 -3.77 -0.06 -28.65 16 16 C 0.09 2.84 6.72 41.85 0.28 3.12 16 17 C -0.13 -3.09 9.63 22.61 0.22 -2.87 16 18 C -0.05 -0.71 10.16 22.42 0.23 -0.48 16 19 C -0.15 -2.01 10.05 22.55 0.23 -1.79 16 20 C 0.30 6.31 7.74 84.92 0.66 6.97 16 21 O -0.49 -8.35 13.56 -89.82 -1.22 -9.56 16 22 N -0.50 -14.77 6.62 -298.20 -1.97 -16.75 16 23 C 0.12 6.19 5.39 86.72 0.47 6.66 16 24 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.38 20.74 7.17 -74.06 -0.53 20.20 16 26 H 0.08 3.27 8.04 -2.38 -0.02 3.25 16 27 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.11 4.01 5.88 -2.39 -0.01 3.99 16 29 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.15 3.64 7.63 -2.91 -0.02 3.62 16 31 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.42 3.06 9.06 -74.06 -0.67 2.39 16 34 H 0.04 2.07 8.01 -2.39 -0.02 2.05 16 35 H 0.04 2.20 7.82 -2.39 -0.02 2.18 16 Total: -1.00 -72.30 301.08 -1.59 -73.89 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.05 Total: 29.15 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 4.12 Total: 20.72 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.45 Total: -97.20 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -3.23 Total: -71.39 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.30 -1.59 -73.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.475 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds