Wall clock time and date at job start Mon Mar 30 2020 23:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48493 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47034 * 299.99986 * 3 2 1 6 6 H 1.48500 * 109.46979 * 59.99523 * 3 2 1 7 7 C 1.38692 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00140 * 359.72636 * 7 2 1 10 10 C 1.35520 * 117.00133 * 174.91244 * 9 7 2 11 11 C 1.38836 * 120.15850 * 5.58578 * 10 9 7 12 12 C 1.38031 * 120.06873 * 179.69730 * 11 10 9 13 13 C 1.38574 * 120.40172 * 0.60586 * 12 11 10 14 14 C 1.37829 * 120.32243 * 359.67653 * 13 12 11 15 15 C 1.39668 * 119.92103 * 0.02562 * 14 13 12 16 16 C 1.47537 * 120.19969 * 179.97438 * 15 14 13 17 17 O 1.21586 * 120.00079 * 180.02562 * 16 15 14 18 18 N 1.34774 * 119.99648 * 0.02562 * 16 15 14 19 19 C 1.46508 * 119.99781 * 180.02562 * 18 16 15 20 20 H 1.08994 * 110.39368 * 34.29773 * 19 18 16 21 21 C 1.54302 * 110.44260 * 156.73641 * 19 18 16 22 22 N 1.48219 * 105.06045 * 117.94567 * 21 19 18 23 23 O 1.47744 * 105.37946 * 24.30178 * 22 21 19 24 24 C 1.44814 * 104.71591 * 319.64316 * 23 22 21 25 25 H 0.96998 * 120.00611 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.96431 * 0.02562 * 11 10 9 27 27 H 1.07996 * 119.79955 * 180.29865 * 12 11 10 28 28 H 1.07999 * 119.84004 * 179.69700 * 13 12 11 29 29 H 1.08003 * 120.04368 * 180.02562 * 14 13 12 30 30 H 0.96999 * 120.00529 * 0.02562 * 18 16 15 31 31 H 1.09005 * 110.32353 * 236.83671 * 21 19 18 32 32 H 1.08993 * 110.32919 * 359.04868 * 21 19 18 33 33 H 1.00898 * 111.00298 * 264.05836 * 22 21 19 34 34 H 1.08997 * 110.50304 * 280.33265 * 24 23 22 35 35 H 1.08999 * 110.65365 * 157.50783 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0066 10 6 2.0683 -3.5031 -0.1003 11 6 3.4552 -3.4402 -0.0930 12 6 4.2005 -4.5975 -0.1957 13 6 3.5733 -5.8270 -0.3192 14 6 2.1974 -5.9078 -0.3341 15 6 1.4300 -4.7460 -0.2248 16 6 -0.0431 -4.8254 -0.2406 17 8 -0.7076 -3.8116 -0.1457 18 7 -0.6522 -6.0217 -0.3602 19 6 -2.1150 -6.1005 -0.3765 20 1 -2.5370 -5.2266 -0.8726 21 6 -2.5773 -7.3946 -1.0784 22 7 -3.3120 -8.1549 -0.0397 23 8 -3.7752 -7.1431 0.9323 24 6 -2.6649 -6.2225 1.0622 25 1 -0.4851 0.8400 -0.0004 26 1 3.9514 -2.4854 -0.0016 27 1 5.2791 -4.5440 -0.1847 28 1 4.1653 -6.7262 -0.4038 29 1 1.7133 -6.8685 -0.4301 30 1 -0.1221 -6.8305 -0.4355 31 1 -3.2379 -7.1576 -1.9124 32 1 -1.7161 -7.9647 -1.4268 33 1 -2.7119 -8.8340 0.4037 34 1 -1.9055 -6.6318 1.7284 35 1 -3.0093 -5.2534 1.4233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:39 Heat of formation + Delta-G solvation = -17.081647 kcal Electronic energy + Delta-G solvation = -21367.229944 eV Core-core repulsion = 17947.611881 eV Total energy + Delta-G solvation = -3419.618063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97236 -39.02451 -37.69225 -36.42353 -34.16687 -32.41390 -31.80866 -30.78865 -29.03735 -28.62697 -25.45959 -24.41859 -23.37156 -21.82316 -20.99685 -20.16573 -18.14893 -17.79811 -17.15266 -16.42108 -15.79782 -15.49599 -15.22239 -14.70710 -14.51407 -14.26338 -14.23111 -13.85213 -13.57913 -13.16342 -12.92001 -12.60227 -12.40964 -12.03057 -11.78614 -11.57783 -11.40106 -11.20169 -10.97986 -10.86183 -10.49323 -10.48906 -9.67890 -9.57545 -9.00034 -8.94994 -8.82615 -8.37625 -7.40069 -6.51492 -4.11598 1.60490 2.23037 2.92999 3.07765 3.08521 3.14514 3.34781 3.58044 3.87833 4.26465 4.41305 4.55841 4.73475 4.87479 4.98258 5.09362 5.16119 5.32854 5.42046 5.50758 5.62506 5.72554 5.83275 6.00773 6.02889 6.26094 6.46403 6.52078 6.60149 6.79957 6.82511 6.97342 7.14977 7.21709 7.60387 7.81509 7.92314 8.87199 8.91765 9.58968 10.62217 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.005187 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.180443 B = 5396.698436 C = 6745.226870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.404 4.404 8 H 0.095 0.905 9 O -0.123 6.123 10 C 0.189 3.811 11 C -0.236 4.236 12 C -0.049 4.049 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.230 4.230 16 C 0.556 3.444 17 O -0.495 6.495 18 N -0.739 5.739 19 C 0.107 3.893 20 H 0.110 0.890 21 C 0.005 3.995 22 N -0.482 5.482 23 O -0.214 6.214 24 C -0.001 4.001 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.393 0.607 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -13.050 -1.132 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.480 4.480 8 H 0.113 0.887 9 O -0.021 6.021 10 C 0.129 3.871 11 C -0.255 4.255 12 C -0.068 4.068 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.235 4.235 16 C 0.346 3.654 17 O -0.369 6.369 18 N -0.396 5.396 19 C -0.001 4.001 20 H 0.128 0.872 21 C -0.126 4.126 22 N -0.146 5.146 23 O -0.225 6.225 24 C -0.081 4.081 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.228 0.772 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.237 -12.103 -1.292 12.174 hybrid contribution 2.036 0.596 0.342 2.149 sum 2.273 -11.506 -0.950 11.767 Atomic orbital electron populations 1.70129 1.06007 1.27779 1.42331 1.25403 0.95822 0.99026 0.96066 0.85645 0.79185 0.80147 0.78429 1.18932 1.19942 1.19958 1.21561 0.91959 0.81034 1.53419 0.88744 1.84163 1.33688 1.11025 1.73220 1.19265 0.89889 0.87369 0.90581 1.21175 0.93361 0.99376 1.11629 1.20915 0.98719 0.92283 0.94892 1.20463 0.94024 0.97182 1.13298 1.20728 0.93902 0.95356 0.95690 1.18765 0.91569 0.92257 1.20939 1.18315 0.87988 0.82659 0.76488 1.90963 1.65756 1.33697 1.46440 1.46017 1.05120 1.09627 1.78860 1.22811 0.82258 1.00029 0.95024 0.87170 1.23800 0.98722 0.93845 0.96186 1.68981 1.40583 1.03591 1.01472 1.92218 1.32735 1.36574 1.60968 1.24485 0.90601 0.96231 0.96783 0.91802 0.84993 0.87097 0.87222 0.87208 0.77192 0.87437 0.89516 0.84730 0.91485 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.69 13.67 55.48 0.76 -23.93 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.40 -11.21 9.49 30.90 0.29 -10.92 16 8 H 0.10 2.38 5.21 -52.49 -0.27 2.10 16 9 O -0.12 -3.55 7.84 -21.07 -0.17 -3.71 16 10 C 0.19 4.55 6.66 -38.60 -0.26 4.29 16 11 C -0.24 -4.91 9.16 -39.44 -0.36 -5.28 16 12 C -0.05 -0.84 10.03 -39.53 -0.40 -1.23 16 13 C -0.23 -3.58 10.03 -39.61 -0.40 -3.98 16 14 C -0.04 -0.61 9.54 -39.20 -0.37 -0.98 16 15 C -0.23 -4.77 5.89 -104.81 -0.62 -5.39 16 16 C 0.56 11.50 7.76 -12.47 -0.10 11.40 16 17 O -0.50 -12.95 14.84 -16.56 -0.25 -13.20 16 18 N -0.74 -10.79 5.04 -53.42 -0.27 -11.06 16 19 C 0.11 1.46 3.42 -66.46 -0.23 1.23 16 20 H 0.11 1.78 7.61 -51.93 -0.40 1.39 16 21 C 0.01 0.05 7.59 -2.41 -0.02 0.04 16 22 N -0.48 -5.35 8.43 -8.95 -0.08 -5.43 16 23 O -0.21 -3.06 12.76 -14.76 -0.19 -3.24 16 24 C 0.00 -0.01 7.65 37.95 0.29 0.28 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.30 6.40 -52.48 -0.34 0.97 16 30 H 0.39 4.38 6.37 -40.82 -0.26 4.12 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 33 H 0.34 2.91 9.09 -39.29 -0.36 2.55 16 34 H 0.07 0.88 8.06 -51.93 -0.42 0.47 16 35 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -34.23 302.90 -6.46 -40.69 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.56 Total: 9.56 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.26 Total: -9.40 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.41 Total: -40.42 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.60 Total: -20.15 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.23 -6.46 -40.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.609 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds