Wall clock time and date at job start Mon Mar 30 2020 23:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48493 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47034 * 299.99986 * 3 2 1 6 6 H 1.48500 * 109.46979 * 59.99523 * 3 2 1 7 7 C 1.38692 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00140 * 359.72636 * 7 2 1 10 10 C 1.35520 * 117.00133 * 174.91244 * 9 7 2 11 11 C 1.38836 * 120.15850 * 5.58578 * 10 9 7 12 12 C 1.38031 * 120.06873 * 179.69730 * 11 10 9 13 13 C 1.38574 * 120.40172 * 0.60586 * 12 11 10 14 14 C 1.37829 * 120.32243 * 359.67653 * 13 12 11 15 15 C 1.39668 * 119.92103 * 0.02562 * 14 13 12 16 16 C 1.47537 * 120.19969 * 179.97438 * 15 14 13 17 17 O 1.21586 * 120.00079 * 180.02562 * 16 15 14 18 18 N 1.34774 * 119.99648 * 0.02562 * 16 15 14 19 19 C 1.46508 * 119.99781 * 180.02562 * 18 16 15 20 20 H 1.08994 * 110.39368 * 34.29773 * 19 18 16 21 21 C 1.54302 * 110.44260 * 156.73641 * 19 18 16 22 22 N 1.48219 * 105.06045 * 117.94567 * 21 19 18 23 23 O 1.47744 * 105.37946 * 24.30178 * 22 21 19 24 24 C 1.44814 * 104.71591 * 319.64316 * 23 22 21 25 25 H 0.96998 * 120.00611 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.96431 * 0.02562 * 11 10 9 27 27 H 1.07996 * 119.79955 * 180.29865 * 12 11 10 28 28 H 1.07999 * 119.84004 * 179.69700 * 13 12 11 29 29 H 1.08003 * 120.04368 * 180.02562 * 14 13 12 30 30 H 0.96999 * 120.00529 * 0.02562 * 18 16 15 31 31 H 1.09005 * 110.32353 * 236.83671 * 21 19 18 32 32 H 1.08993 * 110.32919 * 359.04868 * 21 19 18 33 33 H 1.00898 * 111.00298 * 264.05836 * 22 21 19 34 34 H 1.08997 * 110.50304 * 280.33265 * 24 23 22 35 35 H 1.08999 * 110.65365 * 157.50783 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0066 10 6 2.0683 -3.5031 -0.1003 11 6 3.4552 -3.4402 -0.0930 12 6 4.2005 -4.5975 -0.1957 13 6 3.5733 -5.8270 -0.3192 14 6 2.1974 -5.9078 -0.3341 15 6 1.4300 -4.7460 -0.2248 16 6 -0.0431 -4.8254 -0.2406 17 8 -0.7076 -3.8116 -0.1457 18 7 -0.6522 -6.0217 -0.3602 19 6 -2.1150 -6.1005 -0.3765 20 1 -2.5370 -5.2266 -0.8726 21 6 -2.5773 -7.3946 -1.0784 22 7 -3.3120 -8.1549 -0.0397 23 8 -3.7752 -7.1431 0.9323 24 6 -2.6649 -6.2225 1.0622 25 1 -0.4851 0.8400 -0.0004 26 1 3.9514 -2.4854 -0.0016 27 1 5.2791 -4.5440 -0.1847 28 1 4.1653 -6.7262 -0.4038 29 1 1.7133 -6.8685 -0.4301 30 1 -0.1221 -6.8305 -0.4355 31 1 -3.2379 -7.1576 -1.9124 32 1 -1.7161 -7.9647 -1.4268 33 1 -2.7119 -8.8340 0.4037 34 1 -1.9055 -6.6318 1.7284 35 1 -3.0093 -5.2534 1.4233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:38 Heat of formation + Delta-G solvation = -44.541358 kcal Electronic energy + Delta-G solvation = -21368.420686 eV Core-core repulsion = 17947.611881 eV Total energy + Delta-G solvation = -3420.808805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46799 -40.41494 -39.17941 -38.04053 -35.58027 -34.34188 -32.95253 -32.13411 -30.59229 -29.88598 -27.38541 -25.49344 -24.78245 -23.31638 -22.26758 -21.65809 -19.87379 -19.37276 -18.24498 -18.02348 -17.07522 -16.63397 -16.50373 -16.31316 -16.07187 -15.86041 -15.72195 -15.32672 -15.16756 -14.53816 -14.29089 -14.25340 -13.56790 -13.47502 -13.24100 -13.00701 -12.75545 -12.57954 -12.54886 -12.33488 -12.10868 -11.62018 -11.44787 -10.86187 -10.77539 -10.44470 -10.24731 -9.83090 -9.05783 -8.46816 -6.17739 0.09044 0.71355 1.31727 1.41969 1.51292 1.86016 2.02313 2.07940 2.14359 2.85396 3.18398 3.24515 3.44317 3.44816 3.67543 3.85961 3.94843 4.06873 4.15131 4.27296 4.50350 4.51997 4.59305 4.70013 4.73841 4.95680 5.06144 5.12069 5.24517 5.37547 5.45911 5.59330 5.68898 5.88247 5.94029 6.15423 6.57264 6.93025 7.38885 7.77817 8.73764 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018211 B = 0.005187 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.180443 B = 5396.698436 C = 6745.226870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.022 4.022 3 Si 1.021 2.979 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.426 4.426 8 H 0.107 0.893 9 O -0.189 6.189 10 C 0.148 3.852 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.027 4.027 15 C -0.246 4.246 16 C 0.551 3.449 17 O -0.563 6.563 18 N -0.707 5.707 19 C 0.104 3.896 20 H 0.077 0.923 21 C 0.018 3.982 22 N -0.475 5.475 23 O -0.239 6.239 24 C 0.005 3.995 25 H 0.271 0.729 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.416 0.584 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.358 0.642 34 H 0.079 0.921 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -17.371 -1.838 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.502 4.502 8 H 0.124 0.876 9 O -0.091 6.091 10 C 0.093 3.907 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.219 4.219 14 C -0.046 4.046 15 C -0.251 4.251 16 C 0.342 3.658 17 O -0.441 6.441 18 N -0.365 5.365 19 C -0.004 4.004 20 H 0.095 0.905 21 C -0.113 4.113 22 N -0.143 5.143 23 O -0.248 6.248 24 C -0.075 4.075 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.170 0.830 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.255 0.745 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.097 0.903 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.362 -16.557 -1.994 17.012 hybrid contribution 1.242 1.372 0.511 1.920 sum 4.604 -15.185 -1.482 15.937 Atomic orbital electron populations 1.70317 1.08351 1.28539 1.46910 1.26738 0.96720 1.03099 0.95530 0.84510 0.78463 0.74539 0.78493 1.16809 1.19412 1.19446 1.22064 0.92684 0.81784 1.53692 0.87574 1.84170 1.35233 1.12168 1.77562 1.20114 0.91679 0.87634 0.91267 1.21303 0.92374 1.00946 1.13133 1.21449 1.00724 0.91346 0.92258 1.21194 0.94064 0.98379 1.08220 1.21320 0.94387 0.95596 0.93265 1.19243 0.92121 0.92907 1.20783 1.18577 0.88289 0.83312 0.75663 1.90955 1.67055 1.36521 1.49567 1.45641 1.05720 1.08563 1.76598 1.22849 0.81261 1.00967 0.95319 0.90518 1.23834 1.00048 0.91918 0.95488 1.68944 1.41609 1.02844 1.00878 1.92214 1.33236 1.37354 1.61986 1.24292 0.90883 0.95386 0.96961 0.92033 0.86071 0.82977 0.81740 0.81811 0.74477 0.86930 0.85520 0.82637 0.90273 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.79 13.67 21.62 0.30 -58.50 16 2 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 3 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.43 -25.45 9.49 67.93 0.64 -24.81 16 8 H 0.11 5.69 5.21 -2.91 -0.02 5.67 16 9 O -0.19 -11.78 7.84 0.80 0.01 -11.78 16 10 C 0.15 7.39 6.66 22.91 0.15 7.55 16 11 C -0.26 -10.67 9.16 22.36 0.20 -10.46 16 12 C -0.04 -1.16 10.03 22.30 0.22 -0.94 16 13 C -0.20 -4.85 10.03 22.25 0.22 -4.63 16 14 C -0.03 -0.74 9.54 22.52 0.21 -0.52 16 15 C -0.25 -10.01 5.89 -19.99 -0.12 -10.12 16 16 C 0.55 23.30 7.76 86.70 0.67 23.97 16 17 O -0.56 -31.84 14.84 16.91 0.25 -31.59 16 18 N -0.71 -19.44 5.04 -441.18 -2.22 -21.66 16 19 C 0.10 2.80 3.42 45.94 0.16 2.96 16 20 H 0.08 2.65 7.61 -2.39 -0.02 2.63 16 21 C 0.02 0.31 7.59 86.49 0.66 0.96 16 22 N -0.47 -9.16 8.43 -182.22 -1.54 -10.70 16 23 O -0.24 -6.65 12.76 -54.02 -0.69 -7.34 16 24 C 0.01 0.14 7.65 72.49 0.55 0.70 16 25 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 26 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 27 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 28 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.16 2.60 6.40 -2.91 -0.02 2.58 16 30 H 0.42 7.28 6.37 -92.71 -0.59 6.69 16 31 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.13 1.22 7.66 -2.39 -0.02 1.21 16 33 H 0.36 4.69 9.09 -89.70 -0.82 3.88 16 34 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 35 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -87.97 302.90 1.94 -86.04 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.25 Total: 25.79 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.05 Total: -16.15 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -3.46 Total: -90.85 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.43 Total: -50.71 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -87.97 1.94 -86.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.496 kcal (2) G-P(sol) polarization free energy of solvation -87.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds