Wall clock time and date at job start Tue Mar 31 2020 00:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39059 * 120.00116 * 180.02562 * 11 10 9 13 13 N 1.32411 * 119.58574 * 0.02562 * 12 11 10 14 14 C 1.31826 * 121.76572 * 180.02562 * 13 12 11 15 15 C 1.39127 * 120.73753 * 0.02562 * 14 13 12 16 16 C 1.48429 * 120.44551 * 180.02562 * 15 14 13 17 17 N 1.34060 * 126.68027 * 179.68237 * 16 15 14 18 18 N 1.28981 * 107.27073 * 179.87035 * 17 16 15 19 19 N 1.28731 * 108.94419 * 0.40508 * 18 17 16 20 20 H 0.97005 * 125.33923 * 179.70998 * 19 18 17 21 21 N 1.28866 * 109.32431 * 359.74363 * 19 18 17 22 22 C 1.39926 * 119.11462 * 359.97438 * 15 14 13 23 23 C 1.38252 * 118.38043 * 359.72620 * 22 15 14 24 24 F 1.35098 * 120.41245 * 180.25426 * 23 22 15 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.62929 * 180.02562 * 14 13 12 32 32 H 1.07997 * 120.81070 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2081 -6.1351 0.0024 13 7 3.5322 -6.1255 0.0028 14 6 4.2343 -7.2413 0.0028 15 6 3.6009 -8.4800 0.0016 16 6 4.3977 -9.7322 0.0021 17 7 3.9206 -10.9850 0.0071 18 7 4.9353 -11.7812 0.0029 19 7 6.0158 -11.0813 0.0040 20 1 6.9169 -11.4404 0.0055 21 7 5.7125 -9.8289 0.0036 22 6 2.2025 -8.5296 0.0012 23 6 1.5026 -7.3373 0.0076 24 9 0.1516 -7.3373 0.0126 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.5429 -4.9308 0.0020 31 1 5.3132 -7.1932 0.0036 32 1 1.6825 -9.4761 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:16 Heat of formation + Delta-G solvation = 110.032890 kcal Electronic energy + Delta-G solvation = -19854.026670 eV Core-core repulsion = 16381.045904 eV Total energy + Delta-G solvation = -3472.980766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.77743 -44.61224 -40.08084 -36.26102 -34.57461 -33.81288 -32.96161 -31.97211 -30.63750 -28.54819 -25.24002 -25.07308 -24.04498 -23.09661 -21.90643 -20.91122 -19.44183 -17.91603 -17.37233 -17.31340 -17.07022 -16.17690 -15.82080 -15.26035 -14.60160 -14.37915 -14.26295 -14.18564 -13.93888 -13.28725 -13.03789 -12.64622 -12.49168 -12.22488 -11.78463 -11.47759 -11.30530 -11.26490 -11.04724 -10.66852 -10.53925 -9.72102 -9.69297 -9.59945 -9.55599 -9.32036 -8.46011 -7.46066 -6.11425 -4.14995 0.59496 1.00929 1.09049 2.04584 2.23710 3.27794 3.29474 3.33944 3.37715 3.55204 3.74249 3.90793 4.30051 4.37909 4.48837 4.78019 4.90201 5.16672 5.25550 5.32387 5.58754 5.72949 5.89452 6.15610 6.17272 6.29125 6.43853 6.69392 7.18338 7.41222 7.57193 7.57276 7.86508 7.96779 8.13447 8.29384 8.90598 9.49946 11.00182 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.003055 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.832703 B = 9162.686656 C = 9930.068930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.128 3.872 11 N -0.694 5.694 12 C 0.410 3.590 13 N -0.517 5.517 14 C 0.199 3.801 15 C -0.139 4.139 16 C 0.246 3.754 17 N -0.276 5.276 18 N -0.052 5.052 19 N -0.230 5.230 20 H 0.474 0.526 21 N -0.301 5.301 22 C -0.021 4.021 23 C -0.034 4.034 24 F -0.132 7.132 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.413 0.587 31 H 0.169 0.831 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -20.716 0.002 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.027 4.027 10 C 0.006 3.994 11 N -0.320 5.320 12 C 0.168 3.832 13 N -0.235 5.235 14 C 0.035 3.965 15 C -0.149 4.149 16 C -0.034 4.034 17 N -0.149 5.149 18 N -0.047 5.047 19 N -0.076 5.076 20 H 0.328 0.672 21 N -0.153 5.153 22 C -0.049 4.049 23 C -0.061 4.061 24 F -0.111 7.111 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.250 0.750 31 H 0.186 0.814 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.854 -20.170 0.005 22.449 hybrid contribution -0.093 0.297 -0.002 0.311 sum 9.760 -19.873 0.004 22.141 Atomic orbital electron populations 1.69943 1.06125 1.27071 1.50063 1.25003 0.94888 0.99446 0.94935 0.86560 0.79507 0.82621 0.78774 1.20085 1.21244 1.20082 1.20973 0.93190 0.90230 1.51732 0.92185 1.19347 0.94296 0.91124 0.97960 1.21838 0.95918 0.80465 1.01147 1.45419 1.09281 1.03298 1.74043 1.18813 0.88917 0.86044 0.89453 1.67540 1.04431 1.30081 1.21410 1.22607 1.00207 0.85073 0.88572 1.17582 0.91194 0.88743 1.17352 1.23308 0.86578 0.93323 1.00209 1.76079 1.20842 0.99470 1.18518 1.78880 0.88936 1.22139 1.14774 1.47688 1.11730 1.01766 1.46370 0.67158 1.74932 1.16289 1.00914 1.23159 1.21219 0.92716 0.97754 0.93196 1.17727 0.78041 0.93337 1.16977 1.91484 1.27596 1.97073 1.94948 0.92721 0.95916 0.95911 0.92099 0.92094 0.75013 0.81398 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.13 2.58 5.63 -4.04 -0.02 2.56 16 11 N -0.69 -12.04 5.70 -60.33 -0.34 -12.38 16 12 C 0.41 6.53 7.49 -154.86 -1.16 5.38 16 13 N -0.52 -8.03 9.54 -12.11 -0.12 -8.15 16 14 C 0.20 2.51 10.85 -17.22 -0.19 2.32 16 15 C -0.14 -1.69 5.89 -104.74 -0.62 -2.31 16 16 C 0.25 2.85 7.95 -156.29 -1.24 1.61 16 17 N -0.28 -3.31 12.30 32.15 0.40 -2.91 16 18 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 19 N -0.23 -1.64 7.90 60.35 0.48 -1.17 16 20 H 0.47 1.03 8.96 -340.36 -3.05 -2.02 16 21 N -0.30 -2.95 12.09 32.17 0.39 -2.56 16 22 C -0.02 -0.26 9.81 -38.94 -0.38 -0.64 16 23 C -0.03 -0.48 7.34 -39.15 -0.29 -0.76 16 24 F -0.13 -1.90 16.63 2.25 0.04 -1.86 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.41 6.79 7.93 -40.82 -0.32 6.46 16 31 H 0.17 1.74 7.88 -52.49 -0.41 1.32 16 32 H 0.15 1.64 7.96 -52.49 -0.42 1.23 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -31.28 297.75 -8.03 -39.31 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.44 Total: -1.15 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.45 Total: -4.71 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 2.35 Total: -52.15 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.28 -8.03 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.346 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds