Wall clock time and date at job start Tue Mar 31 2020 00:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39059 * 120.00116 * 180.02562 * 11 10 9 13 13 N 1.32411 * 119.58574 * 0.02562 * 12 11 10 14 14 C 1.31826 * 121.76572 * 180.02562 * 13 12 11 15 15 C 1.39127 * 120.73753 * 0.02562 * 14 13 12 16 16 C 1.48429 * 120.44551 * 180.02562 * 15 14 13 17 17 N 1.34060 * 126.68027 * 179.68237 * 16 15 14 18 18 N 1.28981 * 107.27073 * 179.87035 * 17 16 15 19 19 N 1.28731 * 108.94419 * 0.40508 * 18 17 16 20 20 H 0.97005 * 125.33923 * 179.70998 * 19 18 17 21 21 N 1.28866 * 109.32431 * 359.74363 * 19 18 17 22 22 C 1.39926 * 119.11462 * 359.97438 * 15 14 13 23 23 C 1.38252 * 118.38043 * 359.72620 * 22 15 14 24 24 F 1.35098 * 120.41245 * 180.25426 * 23 22 15 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.62929 * 180.02562 * 14 13 12 32 32 H 1.07997 * 120.81070 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2081 -6.1351 0.0024 13 7 3.5322 -6.1255 0.0028 14 6 4.2343 -7.2413 0.0028 15 6 3.6009 -8.4800 0.0016 16 6 4.3977 -9.7322 0.0021 17 7 3.9206 -10.9850 0.0071 18 7 4.9353 -11.7812 0.0029 19 7 6.0158 -11.0813 0.0040 20 1 6.9169 -11.4404 0.0055 21 7 5.7125 -9.8289 0.0036 22 6 2.2025 -8.5296 0.0012 23 6 1.5026 -7.3373 0.0076 24 9 0.1516 -7.3373 0.0126 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.5429 -4.9308 0.0020 31 1 5.3132 -7.1932 0.0036 32 1 1.6825 -9.4761 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:15 Heat of formation + Delta-G solvation = 88.567595 kcal Electronic energy + Delta-G solvation = -19854.957475 eV Core-core repulsion = 16381.045904 eV Total energy + Delta-G solvation = -3473.911571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.90058 -45.40820 -41.20273 -37.62813 -35.57449 -35.11381 -34.41983 -33.01220 -32.19002 -29.94177 -26.86942 -25.96593 -25.10818 -24.40236 -22.93470 -22.57566 -20.23471 -19.21494 -18.51081 -18.40996 -18.09653 -17.87428 -16.97596 -16.55494 -16.21487 -15.77137 -15.51542 -15.47023 -14.99266 -14.59285 -14.32110 -14.04951 -13.62510 -13.30397 -13.21451 -13.10474 -12.66822 -12.49834 -12.33248 -12.13125 -12.07705 -11.56578 -11.42887 -10.92187 -10.73587 -10.69843 -10.55085 -8.68356 -8.22633 -6.33640 -0.38473 0.02041 0.20756 1.28158 1.43294 1.46032 1.46529 1.53809 2.05638 2.43564 2.63817 2.66470 2.91923 3.12411 3.30111 3.38241 3.81101 3.86001 4.18435 4.42069 4.49148 4.56893 4.61800 4.72641 4.90712 4.91932 5.26131 5.45743 5.59383 5.67185 5.73504 5.95985 6.16915 6.24125 6.80601 7.00523 7.16458 7.36008 8.89462 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.003055 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.832703 B = 9162.686656 C = 9930.068930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.018 3.982 10 C 0.156 3.844 11 N -0.706 5.706 12 C 0.393 3.607 13 N -0.537 5.537 14 C 0.198 3.802 15 C -0.123 4.123 16 C 0.231 3.769 17 N -0.297 5.297 18 N -0.055 5.055 19 N -0.199 5.199 20 H 0.495 0.505 21 N -0.295 5.295 22 C -0.012 4.012 23 C -0.037 4.037 24 F -0.135 7.135 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.414 0.586 31 H 0.192 0.808 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.639 -21.988 0.002 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.033 3.967 11 N -0.335 5.335 12 C 0.153 3.847 13 N -0.254 5.254 14 C 0.036 3.964 15 C -0.132 4.132 16 C -0.049 4.049 17 N -0.169 5.169 18 N -0.050 5.050 19 N -0.050 5.050 20 H 0.354 0.646 21 N -0.147 5.147 22 C -0.040 4.040 23 C -0.064 4.064 24 F -0.115 7.115 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.251 0.749 31 H 0.209 0.791 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.022 -21.512 0.006 24.643 hybrid contribution -0.615 0.454 -0.002 0.764 sum 11.408 -21.058 0.004 23.950 Atomic orbital electron populations 1.70073 1.07780 1.28048 1.51145 1.25935 0.95752 1.03342 0.94461 0.85465 0.78225 0.77879 0.79284 1.19098 1.20973 1.19091 1.21444 0.93794 0.91563 1.51336 0.91595 1.19168 0.94503 0.92421 0.95869 1.21245 0.94427 0.80476 1.00599 1.45080 1.09164 1.02962 1.76320 1.18878 0.89333 0.85817 0.90671 1.67517 1.04438 1.31656 1.21832 1.22951 1.01074 0.84483 0.87873 1.17651 0.91184 0.89104 1.15235 1.23150 0.87093 0.93026 1.01646 1.76069 1.21871 0.99651 1.19342 1.78845 0.89213 1.21938 1.15036 1.47767 1.12441 1.00881 1.43877 0.64587 1.74897 1.15469 1.01902 1.22452 1.21401 0.92902 0.97705 0.91948 1.17739 0.77948 0.93295 1.17385 1.91475 1.27852 1.97083 1.95042 0.92631 0.97963 0.97959 0.92591 0.92586 0.74906 0.79081 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 0.91 5.09 29.85 0.15 1.06 16 10 C 0.16 6.42 5.63 86.38 0.49 6.91 16 11 N -0.71 -25.15 5.70 -344.78 -1.97 -27.12 16 12 C 0.39 12.50 7.49 133.10 1.00 13.50 16 13 N -0.54 -16.30 9.54 -192.23 -1.83 -18.13 16 14 C 0.20 4.66 10.85 84.91 0.92 5.58 16 15 C -0.12 -2.74 5.89 -19.94 -0.12 -2.86 16 16 C 0.23 4.78 7.95 137.36 1.09 5.87 16 17 N -0.30 -6.43 12.30 -52.19 -0.64 -7.07 16 18 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 19 N -0.20 -2.22 7.90 37.02 0.29 -1.93 16 20 H 0.49 0.45 8.96 -347.53 -3.12 -2.67 16 21 N -0.29 -4.87 12.09 -52.14 -0.63 -5.50 16 22 C -0.01 -0.28 9.81 22.68 0.22 -0.05 16 23 C -0.04 -1.02 7.34 22.55 0.17 -0.85 16 24 F -0.14 -3.88 16.63 44.97 0.75 -3.13 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.41 14.21 7.93 -92.71 -0.73 13.48 16 31 H 0.19 3.47 7.88 -2.91 -0.02 3.45 16 32 H 0.17 3.33 7.96 -2.91 -0.02 3.31 16 Total: -1.00 -67.04 297.75 0.74 -66.29 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.65 Total: 6.67 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 4.61 Total: 0.09 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.00 Total: -115.19 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.13 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.04 0.74 -66.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.860 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds