Wall clock time and date at job start Tue Mar 31 2020 00:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00170 * 2 1 4 4 H 1.48497 * 109.47100 * 239.99615 * 3 2 1 5 5 H 1.48504 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47206 * 119.99605 * 3 2 1 7 7 C 1.37876 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00352 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64522 * 298.30608 * 9 7 2 11 11 C 1.54598 * 110.71927 * 61.45233 * 9 7 2 12 12 C 1.54001 * 105.13719 * 140.49653 * 11 9 7 13 13 N 1.47901 * 107.05730 * 1.22570 * 12 11 9 14 14 C 1.38229 * 110.99556 * 214.15599 * 13 12 11 15 15 N 1.32427 * 119.83206 * 37.34914 * 14 13 12 16 16 C 1.31841 * 121.77625 * 179.97438 * 15 14 13 17 17 C 1.38394 * 121.23539 * 0.02562 * 16 15 14 18 18 C 1.38307 * 119.51431 * 359.97438 * 17 16 15 19 19 C 1.40035 * 118.36316 * 0.02562 * 18 17 16 20 20 C 1.47287 * 120.61336 * 180.02562 * 19 18 17 21 21 O 1.21526 * 119.99890 * 174.91662 * 20 19 18 22 22 O 1.34762 * 120.00006 * 354.92207 * 20 19 18 23 23 C 1.48529 * 105.82001 * 334.66731 * 13 12 11 24 24 H 0.97001 * 120.00271 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00094 * 61.69392 * 10 9 7 26 26 H 1.08999 * 110.31255 * 21.57985 * 11 9 7 27 27 H 1.09001 * 110.39477 * 259.45130 * 11 9 7 28 28 H 1.09000 * 109.91787 * 241.86988 * 12 11 9 29 29 H 1.09003 * 110.08201 * 120.67189 * 12 11 9 30 30 H 1.07999 * 119.38222 * 180.02562 * 16 15 14 31 31 H 1.08005 * 120.24178 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.81469 * 179.97438 * 18 17 16 33 33 H 0.96701 * 117.00292 * 180.02562 * 22 20 19 34 34 H 1.09004 * 110.66804 * 157.63884 * 23 13 12 35 35 H 1.09001 * 110.67303 * 280.77099 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4496 -2.6183 1.1776 11 6 0.3796 -2.6277 -1.2700 12 6 0.5040 -4.1025 -1.6954 13 7 1.3714 -4.7695 -0.7003 14 6 2.1427 -5.7508 -1.2943 15 7 2.6334 -5.5579 -2.5091 16 6 3.3738 -6.4675 -3.1113 17 6 3.6723 -7.6713 -2.4973 18 6 3.1866 -7.9275 -1.2279 19 6 2.4022 -6.9486 -0.6056 20 6 1.8600 -7.1693 0.7460 21 8 1.2591 -6.2779 1.3126 22 8 2.0304 -8.3598 1.3542 23 6 2.2240 -3.6985 -0.1239 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2287 -1.9342 1.2625 26 1 0.7579 -1.9740 -2.0559 27 1 -0.6589 -2.3854 -1.0444 28 1 0.9566 -4.1666 -2.6849 29 1 -0.4791 -4.5732 -1.7059 30 1 3.7545 -6.2694 -4.1024 31 1 4.2800 -8.4052 -3.0057 32 1 3.4063 -8.8600 -0.7293 33 1 1.6565 -8.4574 2.2406 34 1 2.6002 -3.9919 0.8561 35 1 3.0471 -3.4580 -0.7968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:52 Heat of formation + Delta-G solvation = -73.046999 kcal Electronic energy + Delta-G solvation = -22140.537352 eV Core-core repulsion = 18718.492449 eV Total energy + Delta-G solvation = -3422.044903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81166 -39.24094 -37.93738 -35.73927 -34.72203 -32.61657 -32.05369 -31.25652 -28.47271 -28.01495 -25.10593 -24.55913 -23.08855 -21.37042 -20.32877 -19.51552 -17.88574 -17.47594 -16.93649 -16.37712 -16.26190 -15.37839 -14.84781 -14.74757 -14.42482 -14.01406 -13.92175 -13.61115 -13.01776 -12.77421 -12.51147 -12.24019 -11.88617 -11.55669 -11.26253 -11.22654 -11.02081 -10.64721 -10.44186 -10.34900 -10.23907 -9.95774 -9.73625 -9.65201 -9.25904 -8.90589 -8.54018 -8.06612 -7.79498 -6.15881 -4.24224 0.62856 1.17455 2.83331 3.15715 3.27434 3.31940 3.34967 3.78429 4.08495 4.35644 4.54848 4.74521 4.87273 5.11250 5.17726 5.29754 5.67202 5.75467 5.90144 5.96748 5.97653 6.11899 6.25999 6.36221 6.55138 6.62668 6.72490 6.88251 7.09247 7.29821 7.52832 7.55852 7.76242 7.85897 7.95199 8.21313 8.22963 8.77174 9.44191 9.64475 10.91191 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.005501 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.148823 B = 5089.127969 C = 5624.849193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.261 3.739 10 O -0.574 6.574 11 C -0.125 4.125 12 C 0.032 3.968 13 N -0.454 5.454 14 C 0.367 3.633 15 N -0.517 5.517 16 C 0.147 3.853 17 C -0.211 4.211 18 C -0.015 4.015 19 C -0.168 4.168 20 C 0.512 3.488 21 O -0.449 6.449 22 O -0.528 6.528 23 C 0.074 3.926 24 H 0.267 0.733 25 H 0.376 0.624 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -15.300 -4.165 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.221 3.779 10 O -0.382 6.382 11 C -0.164 4.164 12 C -0.095 4.095 13 N -0.175 5.175 14 C 0.137 3.863 15 N -0.230 5.230 16 C -0.013 4.013 17 C -0.231 4.231 18 C -0.041 4.041 19 C -0.173 4.173 20 C 0.352 3.648 21 O -0.333 6.333 22 O -0.341 6.341 23 C -0.050 4.050 24 H 0.077 0.923 25 H 0.225 0.775 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.915 -14.807 -4.285 16.179 hybrid contribution 0.472 0.795 0.112 0.931 sum 5.387 -14.013 -4.173 15.582 Atomic orbital electron populations 1.69730 1.05893 1.27497 1.50141 1.24975 0.94980 0.99317 0.93750 0.86528 0.79574 0.82407 0.78727 1.20183 1.21138 1.20090 1.21515 0.93483 0.90635 1.51928 0.92214 1.19280 0.86596 0.89756 0.82294 1.86204 1.51363 1.55963 1.44637 1.22917 1.01992 0.91083 1.00413 1.23067 0.95830 0.96617 0.93972 1.62633 1.16027 1.11451 1.27392 1.20413 0.86898 0.91714 0.87245 1.68077 1.11219 1.32466 1.11233 1.22909 0.90772 0.88689 0.98906 1.22014 1.04728 0.99901 0.96472 1.21826 0.90902 0.97646 0.93720 1.19720 1.06608 0.96458 0.94554 1.20389 0.78408 0.79882 0.86122 1.91116 1.35672 1.42485 1.63984 1.84512 1.75901 1.37416 1.36294 1.23207 0.94514 0.88942 0.98351 0.92300 0.77493 0.91726 0.91320 0.92082 0.91918 0.82410 0.84250 0.83533 0.73145 0.90493 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 11.00 55.43 0.61 -23.73 16 2 C 0.07 1.95 5.28 -17.82 -0.09 1.86 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.82 8.15 -34.44 -0.28 -15.10 16 8 H 0.06 1.63 7.78 -52.49 -0.41 1.23 16 9 C 0.26 6.84 0.95 -89.91 -0.09 6.75 16 10 O -0.57 -15.97 13.09 -35.23 -0.46 -16.44 16 11 C -0.13 -3.04 5.26 -25.37 -0.13 -3.18 16 12 C 0.03 0.68 6.59 -2.75 -0.02 0.66 16 13 N -0.45 -9.86 3.30 -169.00 -0.56 -10.42 16 14 C 0.37 6.84 5.53 -155.20 -0.86 5.98 16 15 N -0.52 -8.74 8.66 -12.19 -0.11 -8.85 16 16 C 0.15 1.80 11.16 -17.49 -0.20 1.61 16 17 C -0.21 -2.14 10.08 -39.50 -0.40 -2.54 16 18 C -0.01 -0.17 9.73 -38.88 -0.38 -0.55 16 19 C -0.17 -2.68 5.91 -104.66 -0.62 -3.30 16 20 C 0.51 8.38 8.26 34.41 0.28 8.66 16 21 O -0.45 -9.32 15.61 -19.29 -0.30 -9.62 16 22 O -0.53 -6.14 12.76 -40.66 -0.52 -6.66 16 23 C 0.07 1.75 5.46 -1.90 -0.01 1.74 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.38 10.41 7.46 45.56 0.34 10.75 16 26 H 0.06 1.62 7.84 -51.93 -0.41 1.21 16 27 H 0.07 1.73 7.98 -51.93 -0.41 1.32 16 28 H 0.06 1.25 6.56 -51.93 -0.34 0.91 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.15 1.32 7.71 -52.49 -0.40 0.91 16 33 H 0.41 3.06 9.11 45.56 0.42 3.48 16 34 H 0.08 1.89 8.03 -51.93 -0.42 1.48 16 35 H 0.05 1.24 7.90 -51.93 -0.41 0.83 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -32.69 300.57 -7.06 -39.75 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -2.45 Total: 12.86 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.79 Total: 2.60 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.05 Total: -43.00 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.28 Total: -32.72 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.69 -7.06 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.295 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds