Wall clock time and date at job start Tue Mar 31 2020 00:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00170 * 2 1 4 4 H 1.48497 * 109.47100 * 239.99615 * 3 2 1 5 5 H 1.48504 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47206 * 119.99605 * 3 2 1 7 7 C 1.37876 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00352 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64522 * 298.30608 * 9 7 2 11 11 C 1.54598 * 110.71927 * 61.45233 * 9 7 2 12 12 C 1.54001 * 105.13719 * 140.49653 * 11 9 7 13 13 N 1.47901 * 107.05730 * 1.22570 * 12 11 9 14 14 C 1.38229 * 110.99556 * 214.15599 * 13 12 11 15 15 N 1.32427 * 119.83206 * 37.34914 * 14 13 12 16 16 C 1.31841 * 121.77625 * 179.97438 * 15 14 13 17 17 C 1.38394 * 121.23539 * 0.02562 * 16 15 14 18 18 C 1.38307 * 119.51431 * 359.97438 * 17 16 15 19 19 C 1.40035 * 118.36316 * 0.02562 * 18 17 16 20 20 C 1.47287 * 120.61336 * 180.02562 * 19 18 17 21 21 O 1.21526 * 119.99890 * 174.91662 * 20 19 18 22 22 O 1.34762 * 120.00006 * 354.92207 * 20 19 18 23 23 C 1.48529 * 105.82001 * 334.66731 * 13 12 11 24 24 H 0.97001 * 120.00271 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00094 * 61.69392 * 10 9 7 26 26 H 1.08999 * 110.31255 * 21.57985 * 11 9 7 27 27 H 1.09001 * 110.39477 * 259.45130 * 11 9 7 28 28 H 1.09000 * 109.91787 * 241.86988 * 12 11 9 29 29 H 1.09003 * 110.08201 * 120.67189 * 12 11 9 30 30 H 1.07999 * 119.38222 * 180.02562 * 16 15 14 31 31 H 1.08005 * 120.24178 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.81469 * 179.97438 * 18 17 16 33 33 H 0.96701 * 117.00292 * 180.02562 * 22 20 19 34 34 H 1.09004 * 110.66804 * 157.63884 * 23 13 12 35 35 H 1.09001 * 110.67303 * 280.77099 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4496 -2.6183 1.1776 11 6 0.3796 -2.6277 -1.2700 12 6 0.5040 -4.1025 -1.6954 13 7 1.3714 -4.7695 -0.7003 14 6 2.1427 -5.7508 -1.2943 15 7 2.6334 -5.5579 -2.5091 16 6 3.3738 -6.4675 -3.1113 17 6 3.6723 -7.6713 -2.4973 18 6 3.1866 -7.9275 -1.2279 19 6 2.4022 -6.9486 -0.6056 20 6 1.8600 -7.1693 0.7460 21 8 1.2591 -6.2779 1.3126 22 8 2.0304 -8.3598 1.3542 23 6 2.2240 -3.6985 -0.1239 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2287 -1.9342 1.2625 26 1 0.7579 -1.9740 -2.0559 27 1 -0.6589 -2.3854 -1.0444 28 1 0.9566 -4.1666 -2.6849 29 1 -0.4791 -4.5732 -1.7059 30 1 3.7545 -6.2694 -4.1024 31 1 4.2800 -8.4052 -3.0057 32 1 3.4063 -8.8600 -0.7293 33 1 1.6565 -8.4574 2.2406 34 1 2.6002 -3.9919 0.8561 35 1 3.0471 -3.4580 -0.7968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:51 Heat of formation + Delta-G solvation = -98.327220 kcal Electronic energy + Delta-G solvation = -22141.633584 eV Core-core repulsion = 18718.492449 eV Total energy + Delta-G solvation = -3423.141135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04338 -40.49957 -39.54126 -36.98899 -36.48516 -34.18602 -33.70629 -32.72770 -30.02255 -29.92063 -26.82889 -25.86385 -24.45133 -22.53103 -21.90191 -21.49674 -19.23640 -18.99504 -18.31602 -17.84810 -17.46057 -16.90243 -16.65802 -16.26430 -15.77461 -15.64671 -15.26764 -15.02490 -14.44265 -14.34536 -14.02248 -13.71809 -13.42535 -13.27656 -13.22342 -12.87717 -12.56013 -12.42657 -12.36233 -12.24320 -11.81236 -11.48777 -11.20716 -10.99681 -10.80060 -10.62484 -10.17512 -10.11367 -9.35132 -8.22231 -6.39404 -0.47178 0.15352 1.40875 1.42358 1.50396 1.66783 2.08921 2.37097 2.66159 2.76899 3.02862 3.44676 3.80816 3.86128 3.97192 4.04285 4.13626 4.23174 4.38988 4.41475 4.64672 4.73880 4.78242 4.95851 4.96941 5.06469 5.17028 5.40708 5.49873 5.51628 5.59917 5.70935 5.78123 6.12524 6.32139 6.64825 6.84681 7.13397 7.31990 7.47087 8.83588 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.005501 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.148823 B = 5089.127969 C = 5624.849193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.245 3.755 10 O -0.586 6.586 11 C -0.113 4.113 12 C 0.042 3.958 13 N -0.463 5.463 14 C 0.326 3.674 15 N -0.547 5.547 16 C 0.139 3.861 17 C -0.179 4.179 18 C -0.006 4.006 19 C -0.185 4.185 20 C 0.518 3.482 21 O -0.507 6.507 22 O -0.507 6.507 23 C 0.090 3.910 24 H 0.270 0.730 25 H 0.371 0.629 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.195 0.805 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.430 0.570 34 H 0.057 0.943 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 -17.469 -5.666 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.603 4.603 8 H 0.071 0.929 9 C 0.205 3.795 10 O -0.394 6.394 11 C -0.152 4.152 12 C -0.084 4.084 13 N -0.184 5.184 14 C 0.097 3.903 15 N -0.260 5.260 16 C -0.019 4.019 17 C -0.198 4.198 18 C -0.032 4.032 19 C -0.191 4.191 20 C 0.360 3.640 21 O -0.395 6.395 22 O -0.321 6.321 23 C -0.036 4.036 24 H 0.080 0.920 25 H 0.219 0.781 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.211 0.789 31 H 0.209 0.791 32 H 0.199 0.801 33 H 0.291 0.709 34 H 0.076 0.924 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.832 -17.041 -5.791 19.251 hybrid contribution -0.022 1.268 0.518 1.369 sum 6.810 -15.774 -5.273 17.972 Atomic orbital electron populations 1.69823 1.06912 1.28366 1.49764 1.25713 0.95868 1.02328 0.93046 0.85530 0.78428 0.78423 0.78732 1.19525 1.20251 1.20002 1.21747 0.93391 0.91973 1.53234 0.92891 1.19519 0.87132 0.90613 0.82211 1.86202 1.51462 1.55809 1.45885 1.22672 1.00288 0.92995 0.99214 1.22899 0.96467 0.94545 0.94539 1.62468 1.16726 1.11046 1.28142 1.20322 0.89274 0.91876 0.88807 1.67934 1.12587 1.34715 1.10810 1.23642 0.89423 0.88729 1.00142 1.22573 1.02479 0.99466 0.95283 1.22255 0.89138 0.97545 0.94237 1.19867 1.07843 0.96838 0.94528 1.20606 0.77070 0.80042 0.86278 1.91099 1.38458 1.44501 1.65463 1.84450 1.75288 1.34805 1.37563 1.22839 0.94053 0.89177 0.97492 0.92030 0.78082 0.93170 0.93072 0.91136 0.91540 0.78855 0.79062 0.80145 0.70903 0.92410 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 11.00 21.45 0.24 -50.55 16 2 C 0.03 1.73 5.28 84.65 0.45 2.18 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.57 -32.32 8.15 25.60 0.21 -32.11 16 8 H 0.05 3.01 7.78 -2.91 -0.02 2.98 16 9 C 0.25 13.46 0.95 -10.33 -0.01 13.45 16 10 O -0.59 -34.39 13.09 -148.98 -1.95 -36.34 16 11 C -0.11 -5.75 5.26 31.48 0.17 -5.58 16 12 C 0.04 1.89 6.59 86.45 0.57 2.46 16 13 N -0.46 -20.80 3.30 -688.61 -2.27 -23.07 16 14 C 0.33 12.11 5.53 133.67 0.74 12.85 16 15 N -0.55 -17.83 8.66 -192.49 -1.67 -19.50 16 16 C 0.14 2.89 11.16 84.73 0.95 3.84 16 17 C -0.18 -2.65 10.08 22.32 0.23 -2.43 16 18 C -0.01 -0.12 9.73 22.72 0.22 0.10 16 19 C -0.19 -5.67 5.91 -19.89 -0.12 -5.78 16 20 C 0.52 16.72 8.26 70.20 0.58 17.29 16 21 O -0.51 -21.81 15.61 19.75 0.31 -21.50 16 22 O -0.51 -10.71 12.76 -56.72 -0.72 -11.43 16 23 C 0.09 4.47 5.46 86.65 0.47 4.94 16 24 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.37 21.70 7.46 -74.05 -0.55 21.14 16 26 H 0.05 2.63 7.84 -2.39 -0.02 2.61 16 27 H 0.05 2.72 7.98 -2.39 -0.02 2.70 16 28 H 0.07 2.95 6.56 -2.39 -0.02 2.93 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.18 2.22 7.71 -2.91 -0.02 2.20 16 33 H 0.43 5.62 9.11 -74.06 -0.67 4.94 16 34 H 0.06 3.02 8.03 -2.39 -0.02 3.01 16 35 H 0.05 2.39 7.90 -2.39 -0.02 2.37 16 Total: -1.00 -75.45 300.57 0.33 -75.12 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.08 Total: 30.49 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 4.45 Total: 11.21 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.70 Total: -93.12 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: -2.37 Total: -69.27 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.45 0.33 -75.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.203 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds