Wall clock time and date at job start Tue Mar 31 2020 00:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46958 * 299.99512 * 3 2 1 6 6 H 1.48504 * 109.47365 * 59.99724 * 3 2 1 7 7 C 1.37875 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00541 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99739 * 0.28133 * 7 2 1 10 10 O 1.42902 * 110.28784 * 60.39285 * 9 7 2 11 11 C 1.54263 * 110.32197 * 298.27029 * 9 7 2 12 12 C 1.54386 * 105.06045 * 241.10168 * 11 9 7 13 13 N 1.48565 * 104.59280 * 23.85425 * 12 11 9 14 14 C 1.38217 * 111.00008 * 200.96062 * 13 12 11 15 15 N 1.32431 * 119.83527 * 36.29984 * 14 13 12 16 16 C 1.31841 * 121.78455 * 180.02562 * 15 14 13 17 17 C 1.38395 * 121.23141 * 359.97438 * 16 15 14 18 18 C 1.38298 * 119.51599 * 359.97438 * 17 16 15 19 19 C 1.40049 * 118.36543 * 359.73095 * 18 17 16 20 20 C 1.47275 * 120.61868 * 180.26668 * 19 18 17 21 21 O 1.21521 * 120.00105 * 185.66370 * 20 19 18 22 22 O 1.34767 * 119.99883 * 5.65550 * 20 19 18 23 23 C 1.48566 * 104.22043 * 320.51501 * 13 12 11 24 24 H 0.96999 * 120.00252 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00221 * 300.70396 * 10 9 7 26 26 H 1.08994 * 110.32640 * 359.97438 * 11 9 7 27 27 H 1.08995 * 110.32366 * 122.20701 * 11 9 7 28 28 H 1.09003 * 110.40804 * 142.62730 * 12 11 9 29 29 H 1.08996 * 110.41409 * 264.95854 * 12 11 9 30 30 H 1.08006 * 119.38048 * 180.02562 * 16 15 14 31 31 H 1.08000 * 120.23854 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.82118 * 179.97438 * 18 17 16 33 33 H 0.96705 * 116.99783 * 180.02562 * 22 20 19 34 34 H 1.08989 * 110.41152 * 280.70589 * 23 13 12 35 35 H 1.09001 * 110.40552 * 158.26287 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0053 10 8 0.4348 -2.5948 -1.1743 11 6 0.3844 -2.6231 1.2649 12 6 0.9178 -3.8752 1.9937 13 7 2.3135 -4.0254 1.5074 14 6 2.7649 -5.3191 1.6890 15 7 1.9315 -6.3360 1.5304 16 6 2.3207 -7.5849 1.6944 17 6 3.6253 -7.8903 2.0412 18 6 4.5400 -6.8684 2.2192 19 6 4.1081 -5.5491 2.0341 20 6 5.0420 -4.4232 2.2050 21 8 4.6336 -3.2803 2.1433 22 8 6.3494 -4.6604 2.4300 23 6 2.2351 -3.6867 0.0630 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2182 -1.8865 -1.2572 26 1 0.5044 -1.7403 1.8927 27 1 -0.6632 -2.7588 0.9965 28 1 0.9057 -3.7209 3.0727 29 1 0.3248 -4.7507 1.7290 30 1 1.6084 -8.3847 1.5548 31 1 3.9269 -8.9192 2.1711 32 1 5.5632 -7.0827 2.4903 33 1 6.9235 -3.8894 2.5361 34 1 1.8496 -4.5330 -0.5055 35 1 3.2149 -3.3906 -0.3117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:55 Heat of formation + Delta-G solvation = -72.448517 kcal Electronic energy + Delta-G solvation = -22224.828163 eV Core-core repulsion = 18802.809213 eV Total energy + Delta-G solvation = -3422.018951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81694 -39.23501 -37.97625 -35.73554 -34.85471 -32.63459 -32.02341 -31.30987 -28.43535 -27.91388 -25.04514 -24.58843 -23.10957 -21.36757 -20.47325 -19.44594 -17.87991 -17.32497 -16.96477 -16.64671 -16.25437 -15.35740 -14.87496 -14.75408 -14.28835 -13.99348 -13.84614 -13.65157 -13.02505 -12.86686 -12.57328 -12.10707 -11.96082 -11.65215 -11.25812 -11.16127 -10.96638 -10.56233 -10.42168 -10.30311 -10.21102 -10.01842 -9.88983 -9.67675 -9.07934 -8.92335 -8.49466 -8.08539 -7.92460 -6.08822 -4.12943 0.61312 1.15448 2.83362 3.15958 3.31211 3.38973 3.46267 3.76353 4.05626 4.43596 4.52504 4.72981 4.85913 5.14238 5.18701 5.28568 5.65901 5.72353 5.89062 5.95055 6.04460 6.15324 6.28266 6.32396 6.35240 6.59463 6.73334 6.88738 7.02448 7.18899 7.55110 7.66356 7.76932 7.92349 7.93723 8.23424 8.27987 8.90705 9.49201 9.58270 10.98963 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.006325 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.477780 B = 4425.992343 C = 5358.984209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.253 3.747 10 O -0.594 6.594 11 C -0.118 4.118 12 C 0.033 3.967 13 N -0.441 5.441 14 C 0.365 3.635 15 N -0.518 5.518 16 C 0.146 3.854 17 C -0.209 4.209 18 C -0.015 4.015 19 C -0.165 4.165 20 C 0.511 3.489 21 O -0.447 6.447 22 O -0.528 6.528 23 C 0.072 3.928 24 H 0.264 0.736 25 H 0.384 0.616 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.411 0.589 34 H 0.040 0.960 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -13.978 5.303 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.213 3.787 10 O -0.403 6.403 11 C -0.157 4.157 12 C -0.094 4.094 13 N -0.163 5.163 14 C 0.135 3.865 15 N -0.230 5.230 16 C -0.014 4.014 17 C -0.230 4.230 18 C -0.041 4.041 19 C -0.170 4.170 20 C 0.351 3.649 21 O -0.330 6.330 22 O -0.341 6.341 23 C -0.052 4.052 24 H 0.074 0.926 25 H 0.235 0.765 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.269 0.731 34 H 0.059 0.941 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.923 -13.801 5.172 16.283 hybrid contribution 0.820 1.132 0.218 1.415 sum 7.743 -12.669 5.390 15.796 Atomic orbital electron populations 1.69698 1.05854 1.27115 1.51683 1.24991 0.94980 0.99385 0.94279 0.86404 0.80305 0.83111 0.77384 1.19675 1.21091 1.21025 1.21682 0.93744 0.90109 1.49440 0.91714 1.19199 0.86252 0.91140 0.82081 1.86067 1.53249 1.54653 1.46327 1.22855 0.98426 0.95254 0.99159 1.23250 0.86822 0.99838 0.99441 1.63231 1.23652 1.13040 1.16394 1.20419 0.88218 0.90186 0.87676 1.68091 1.38404 1.00161 1.16381 1.22905 0.94431 0.93403 0.90613 1.22020 0.94744 1.00465 1.05724 1.21834 1.00275 0.90787 0.91234 1.19724 0.93531 0.92705 1.11060 1.20379 0.80604 0.88831 0.75085 1.91120 1.77147 1.22225 1.42508 1.84510 1.20546 1.43981 1.85105 1.22971 1.00973 0.97958 0.83345 0.92581 0.76495 0.90473 0.92632 0.91670 0.92241 0.82397 0.84214 0.83478 0.73097 0.94141 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 10.80 55.43 0.60 -24.27 16 2 C 0.06 1.77 5.02 -17.82 -0.09 1.68 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.45 8.09 -34.44 -0.28 -14.73 16 8 H 0.06 1.89 7.53 -52.49 -0.40 1.49 16 9 C 0.25 6.63 1.06 -90.39 -0.10 6.53 16 10 O -0.59 -15.98 12.95 -35.23 -0.46 -16.44 16 11 C -0.12 -2.90 5.56 -25.34 -0.14 -3.04 16 12 C 0.03 0.71 6.32 -2.18 -0.01 0.70 16 13 N -0.44 -9.60 3.34 -168.54 -0.56 -10.17 16 14 C 0.36 6.78 5.54 -155.20 -0.86 5.92 16 15 N -0.52 -8.68 8.78 -12.19 -0.11 -8.79 16 16 C 0.15 1.77 11.16 -17.49 -0.20 1.57 16 17 C -0.21 -2.10 10.08 -39.50 -0.40 -2.50 16 18 C -0.02 -0.18 9.73 -38.88 -0.38 -0.56 16 19 C -0.16 -2.63 5.91 -104.66 -0.62 -3.25 16 20 C 0.51 8.42 8.25 34.40 0.28 8.71 16 21 O -0.45 -9.35 15.87 -19.28 -0.31 -9.65 16 22 O -0.53 -6.25 12.77 -40.67 -0.52 -6.77 16 23 C 0.07 1.71 5.71 -2.18 -0.01 1.70 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.38 10.38 7.28 45.56 0.33 10.71 16 26 H 0.08 2.06 7.25 -51.93 -0.38 1.68 16 27 H 0.06 1.35 7.98 -51.93 -0.41 0.93 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.23 6.92 -51.93 -0.36 0.87 16 30 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.15 1.32 7.71 -52.49 -0.40 0.91 16 33 H 0.41 3.20 9.11 45.56 0.42 3.61 16 34 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.08 1.92 7.67 -51.93 -0.40 1.52 16 LS Contribution 299.75 15.07 4.52 4.52 Total: -1.00 -32.87 299.75 -7.07 -39.94 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.42 Total: 12.12 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -2.80 Total: 2.74 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.07 Total: -43.23 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.28 Total: -32.86 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.87 -7.07 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.507 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds