Wall clock time and date at job start Tue Mar 31 2020 00:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46958 * 299.99512 * 3 2 1 6 6 H 1.48504 * 109.47365 * 59.99724 * 3 2 1 7 7 C 1.37875 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00541 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99739 * 0.28133 * 7 2 1 10 10 O 1.42902 * 110.28784 * 60.39285 * 9 7 2 11 11 C 1.54263 * 110.32197 * 298.27029 * 9 7 2 12 12 C 1.54386 * 105.06045 * 241.10168 * 11 9 7 13 13 N 1.48565 * 104.59280 * 23.85425 * 12 11 9 14 14 C 1.38217 * 111.00008 * 200.96062 * 13 12 11 15 15 N 1.32431 * 119.83527 * 36.29984 * 14 13 12 16 16 C 1.31841 * 121.78455 * 180.02562 * 15 14 13 17 17 C 1.38395 * 121.23141 * 359.97438 * 16 15 14 18 18 C 1.38298 * 119.51599 * 359.97438 * 17 16 15 19 19 C 1.40049 * 118.36543 * 359.73095 * 18 17 16 20 20 C 1.47275 * 120.61868 * 180.26668 * 19 18 17 21 21 O 1.21521 * 120.00105 * 185.66370 * 20 19 18 22 22 O 1.34767 * 119.99883 * 5.65550 * 20 19 18 23 23 C 1.48566 * 104.22043 * 320.51501 * 13 12 11 24 24 H 0.96999 * 120.00252 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00221 * 300.70396 * 10 9 7 26 26 H 1.08994 * 110.32640 * 359.97438 * 11 9 7 27 27 H 1.08995 * 110.32366 * 122.20701 * 11 9 7 28 28 H 1.09003 * 110.40804 * 142.62730 * 12 11 9 29 29 H 1.08996 * 110.41409 * 264.95854 * 12 11 9 30 30 H 1.08006 * 119.38048 * 180.02562 * 16 15 14 31 31 H 1.08000 * 120.23854 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.82118 * 179.97438 * 18 17 16 33 33 H 0.96705 * 116.99783 * 180.02562 * 22 20 19 34 34 H 1.08989 * 110.41152 * 280.70589 * 23 13 12 35 35 H 1.09001 * 110.40552 * 158.26287 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0053 10 8 0.4348 -2.5948 -1.1743 11 6 0.3844 -2.6231 1.2649 12 6 0.9178 -3.8752 1.9937 13 7 2.3135 -4.0254 1.5074 14 6 2.7649 -5.3191 1.6890 15 7 1.9315 -6.3360 1.5304 16 6 2.3207 -7.5849 1.6944 17 6 3.6253 -7.8903 2.0412 18 6 4.5400 -6.8684 2.2192 19 6 4.1081 -5.5491 2.0341 20 6 5.0420 -4.4232 2.2050 21 8 4.6336 -3.2803 2.1433 22 8 6.3494 -4.6604 2.4300 23 6 2.2351 -3.6867 0.0630 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2182 -1.8865 -1.2572 26 1 0.5044 -1.7403 1.8927 27 1 -0.6632 -2.7588 0.9965 28 1 0.9057 -3.7209 3.0727 29 1 0.3248 -4.7507 1.7290 30 1 1.6084 -8.3847 1.5548 31 1 3.9269 -8.9192 2.1711 32 1 5.5632 -7.0827 2.4903 33 1 6.9235 -3.8894 2.5361 34 1 1.8496 -4.5330 -0.5055 35 1 3.2149 -3.3906 -0.3117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:54 Heat of formation + Delta-G solvation = -97.959799 kcal Electronic energy + Delta-G solvation = -22225.934415 eV Core-core repulsion = 18802.809213 eV Total energy + Delta-G solvation = -3423.125203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04641 -40.50685 -39.58067 -37.02892 -36.58435 -34.17922 -33.71738 -32.75834 -30.02249 -29.78486 -26.81978 -25.88714 -24.48870 -22.53561 -22.03431 -21.42239 -19.10918 -19.01279 -18.54084 -17.95069 -17.40889 -16.87322 -16.60834 -16.16128 -15.92260 -15.67922 -15.21898 -15.01355 -14.51468 -14.24712 -14.08843 -13.84834 -13.46486 -13.28281 -13.18017 -12.88377 -12.47226 -12.42525 -12.37247 -12.22140 -12.01835 -11.52492 -11.12765 -10.97570 -10.80619 -10.62218 -10.19165 -10.15456 -9.43831 -8.20757 -6.32545 -0.48396 0.14137 1.37429 1.39423 1.52221 1.66406 2.08251 2.40150 2.58295 2.75686 3.05704 3.43491 3.80843 3.88187 3.97732 3.99359 4.16434 4.25550 4.38048 4.44271 4.47141 4.72720 4.74918 4.91829 4.98903 5.07505 5.12888 5.25317 5.49419 5.59224 5.68888 5.70094 5.79584 6.14449 6.29336 6.70582 6.83201 7.12752 7.33701 7.41445 8.85804 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.006325 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.477780 B = 4425.992343 C = 5358.984209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.239 3.761 10 O -0.600 6.600 11 C -0.108 4.108 12 C 0.045 3.955 13 N -0.451 5.451 14 C 0.324 3.676 15 N -0.546 5.546 16 C 0.139 3.861 17 C -0.177 4.177 18 C -0.007 4.007 19 C -0.183 4.183 20 C 0.517 3.483 21 O -0.506 6.506 22 O -0.507 6.507 23 C 0.088 3.912 24 H 0.269 0.731 25 H 0.380 0.620 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.429 0.571 34 H 0.036 0.964 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 -16.604 6.165 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.062 0.938 9 C 0.200 3.800 10 O -0.408 6.408 11 C -0.146 4.146 12 C -0.082 4.082 13 N -0.173 5.173 14 C 0.095 3.905 15 N -0.260 5.260 16 C -0.019 4.019 17 C -0.196 4.196 18 C -0.032 4.032 19 C -0.188 4.188 20 C 0.359 3.641 21 O -0.394 6.394 22 O -0.322 6.322 23 C -0.038 4.038 24 H 0.079 0.921 25 H 0.230 0.770 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.213 0.787 31 H 0.210 0.790 32 H 0.199 0.801 33 H 0.291 0.709 34 H 0.054 0.946 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.319 -16.466 6.047 19.414 hybrid contribution 0.484 1.736 -0.023 1.803 sum 8.804 -14.730 6.024 18.187 Atomic orbital electron populations 1.69762 1.06548 1.28021 1.51127 1.25640 0.95903 1.02062 0.93695 0.85500 0.78663 0.79500 0.77869 1.20324 1.19873 1.20302 1.21760 0.92957 0.91796 1.50933 0.93766 1.19385 0.86791 0.91651 0.82222 1.86059 1.53256 1.54393 1.47120 1.22608 0.97972 0.95720 0.98347 1.23070 0.87414 0.98308 0.99362 1.63087 1.23061 1.16615 1.14545 1.20313 0.89729 0.89305 0.91145 1.67956 1.38964 1.01620 1.17423 1.23656 0.96497 0.92365 0.89423 1.22584 0.93076 1.02448 1.01516 1.22260 1.02177 0.88957 0.89824 1.19864 0.92440 0.94511 1.12015 1.20625 0.81686 0.88264 0.73535 1.91103 1.78357 1.24436 1.45465 1.84451 1.18823 1.44835 1.84051 1.22621 0.98995 0.96622 0.85559 0.92138 0.77000 0.93302 0.93140 0.90911 0.91471 0.78728 0.78995 0.80138 0.70942 0.94606 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 10.80 21.45 0.23 -51.26 16 2 C 0.03 1.50 5.02 84.66 0.43 1.93 16 3 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.54 -31.69 8.09 25.60 0.21 -31.48 16 8 H 0.04 2.73 7.53 -2.91 -0.02 2.71 16 9 C 0.24 13.10 1.06 -10.64 -0.01 13.09 16 10 O -0.60 -33.56 12.95 -148.98 -1.93 -35.49 16 11 C -0.11 -5.51 5.56 31.49 0.18 -5.34 16 12 C 0.05 2.01 6.32 86.45 0.55 2.55 16 13 N -0.45 -20.32 3.34 -687.15 -2.30 -22.61 16 14 C 0.32 11.99 5.54 133.68 0.74 12.73 16 15 N -0.55 -17.58 8.78 -192.48 -1.69 -19.27 16 16 C 0.14 2.83 11.16 84.73 0.95 3.77 16 17 C -0.18 -2.57 10.08 22.32 0.23 -2.35 16 18 C -0.01 -0.13 9.73 22.72 0.22 0.10 16 19 C -0.18 -5.60 5.91 -19.89 -0.12 -5.72 16 20 C 0.52 16.89 8.25 70.20 0.58 17.46 16 21 O -0.51 -22.01 15.87 19.77 0.31 -21.70 16 22 O -0.51 -11.01 12.77 -56.78 -0.72 -11.74 16 23 C 0.09 4.37 5.71 86.45 0.49 4.86 16 24 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.38 21.35 7.28 -74.06 -0.54 20.82 16 26 H 0.05 2.73 7.25 -2.39 -0.02 2.71 16 27 H 0.05 2.55 7.98 -2.39 -0.02 2.53 16 28 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.07 2.83 6.92 -2.39 -0.02 2.81 16 30 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.18 2.22 7.71 -2.91 -0.02 2.20 16 33 H 0.43 5.97 9.11 -74.05 -0.67 5.30 16 34 H 0.04 1.75 7.90 -2.39 -0.02 1.73 16 35 H 0.06 3.14 7.67 -2.39 -0.02 3.12 16 Total: -1.00 -75.99 299.75 0.30 -75.69 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.06 Total: 27.13 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.43 Total: 11.60 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.76 Total: -93.14 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -2.34 Total: -68.93 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.99 0.30 -75.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.267 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds