Wall clock time and date at job start Mon Mar 30 2020 23:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47036 * 240.00102 * 3 2 1 5 5 H 1.48499 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47273 * 119.99581 * 3 2 1 7 7 C 1.37880 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47275 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46863 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99863 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00196 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00420 * 180.27443 * 12 11 10 15 15 C 1.39242 * 120.00696 * 174.08131 * 14 12 11 16 16 C 1.38854 * 120.16272 * 334.71736 * 15 14 12 17 17 C 1.38016 * 120.07491 * 179.97438 * 16 15 14 18 18 C 1.38591 * 120.41379 * 359.97438 * 17 16 15 19 19 C 1.37757 * 120.34564 * 0.02562 * 18 17 16 20 20 C 1.39766 * 119.91043 * 359.72142 * 19 18 17 21 21 C 1.47370 * 120.20503 * 180.25099 * 20 19 18 22 22 O 1.21510 * 120.00480 * 185.19954 * 21 20 19 23 23 O 1.34763 * 120.00168 * 5.20623 * 21 20 19 24 24 H 0.96996 * 120.00401 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46810 * 59.99305 * 9 7 2 26 26 H 1.08998 * 109.46695 * 299.99985 * 9 7 2 27 27 H 1.08996 * 109.46969 * 60.00006 * 10 9 7 28 28 H 1.09007 * 109.46764 * 299.99757 * 10 9 7 29 29 H 0.97003 * 120.00515 * 359.97438 * 11 10 9 30 30 H 0.97008 * 119.99605 * 354.07840 * 14 12 11 31 31 H 1.07999 * 119.96970 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.79592 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.82514 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.04456 * 180.02562 * 19 18 17 35 35 H 0.96694 * 117.00566 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0979 0.0003 13 8 3.4026 -6.0980 0.0007 14 7 1.5130 -7.2651 -0.0058 15 6 2.2042 -8.4675 -0.1298 16 6 3.4451 -8.4980 -0.7521 17 6 4.1288 -9.6907 -0.8735 18 6 3.5853 -10.8648 -0.3766 19 6 2.3554 -10.8543 0.2439 20 6 1.6532 -9.6534 0.3792 21 6 0.3396 -9.6339 1.0468 22 8 -0.3103 -8.6077 1.0793 23 8 -0.1410 -10.7541 1.6214 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.5428 -4.9309 0.0000 30 1 0.5464 -7.2676 0.0761 31 1 3.8758 -7.5874 -1.1416 32 1 5.0935 -9.7093 -1.3587 33 1 4.1284 -11.7928 -0.4771 34 1 1.9366 -11.7720 0.6297 35 1 -1.0072 -10.6925 2.0468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:08 Heat of formation + Delta-G solvation = -94.042285 kcal Electronic energy + Delta-G solvation = -20582.633474 eV Core-core repulsion = 17159.678147 eV Total energy + Delta-G solvation = -3422.955327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15454 -39.90010 -38.45374 -36.48706 -35.18089 -34.47400 -32.88796 -31.55658 -30.32735 -28.91300 -25.10337 -24.56195 -23.16112 -21.59663 -20.98856 -20.63943 -18.40047 -18.13438 -17.73800 -17.21743 -16.34813 -15.99229 -15.52497 -15.17767 -14.76454 -14.60165 -14.46354 -14.07356 -13.69378 -13.56564 -13.18488 -12.82640 -12.29516 -12.28321 -11.86774 -11.75336 -11.22591 -11.06660 -10.87814 -10.66248 -10.56861 -10.31991 -9.91192 -9.59457 -9.30970 -9.21498 -8.66232 -8.41680 -8.08924 -6.09632 -4.12866 0.48626 1.21453 2.32218 2.75020 2.79523 3.24983 3.31305 3.35164 3.38494 3.74084 4.34967 4.49912 4.57115 4.77178 4.84129 5.19089 5.21483 5.27361 5.39535 5.71017 5.97328 6.04852 6.15849 6.24192 6.31917 6.33277 6.40964 6.71182 6.83864 6.86022 7.14066 7.53086 7.60326 7.60518 7.88467 8.15498 8.29097 8.72361 8.92922 9.51914 11.01982 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003259 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.697337 B = 8590.003579 C = 9403.243260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.727 5.727 12 C 0.695 3.305 13 O -0.578 6.578 14 N -0.680 5.680 15 C 0.255 3.745 16 C -0.151 4.151 17 C -0.055 4.055 18 C -0.168 4.168 19 C -0.038 4.038 20 C -0.187 4.187 21 C 0.536 3.464 22 O -0.523 6.523 23 O -0.510 6.510 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.398 0.602 30 H 0.421 0.579 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -24.045 -0.173 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.015 3.985 11 N -0.379 5.379 12 C 0.395 3.605 13 O -0.457 6.457 14 N -0.332 5.332 15 C 0.154 3.846 16 C -0.172 4.172 17 C -0.074 4.074 18 C -0.187 4.187 19 C -0.056 4.056 20 C -0.192 4.192 21 C 0.383 3.617 22 O -0.414 6.414 23 O -0.322 6.322 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.231 0.769 30 H 0.265 0.735 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.546 -23.486 -0.343 23.626 hybrid contribution -1.172 0.981 0.421 1.585 sum 1.374 -22.505 0.078 22.548 Atomic orbital electron populations 1.69942 1.06110 1.27033 1.50176 1.24997 0.94896 0.99426 0.94944 0.86555 0.79498 0.82587 0.78790 1.20085 1.21251 1.20086 1.20994 0.93229 0.90285 1.51631 0.92211 1.19337 0.94245 0.90957 0.97994 1.21713 0.95781 0.79991 1.00983 1.45623 1.10327 1.05108 1.76837 1.16110 0.85654 0.80488 0.78199 1.90855 1.11405 1.86261 1.57140 1.43346 1.12473 1.03315 1.74031 1.17564 0.92171 0.83631 0.91245 1.21580 0.94348 1.00383 1.00861 1.21372 0.99044 0.91711 0.95300 1.21053 0.96391 0.98744 1.02510 1.21176 0.93571 0.96238 0.94659 1.18648 0.95436 0.94892 1.10175 1.20755 0.85596 0.80366 0.74979 1.90677 1.59753 1.32775 1.58157 1.84550 1.41002 1.38452 1.68162 0.92754 0.95842 0.95844 0.92402 0.92338 0.76850 0.73456 0.82265 0.85048 0.85286 0.84422 0.72664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.94 5.61 -4.04 -0.02 2.92 16 11 N -0.73 -13.24 5.56 -65.23 -0.36 -13.61 16 12 C 0.69 12.58 8.36 -86.93 -0.73 11.85 16 13 O -0.58 -11.85 13.52 5.29 0.07 -11.78 16 14 N -0.68 -10.36 4.96 -14.05 -0.07 -10.43 16 15 C 0.26 3.58 6.43 -83.48 -0.54 3.04 16 16 C -0.15 -2.02 8.69 -39.43 -0.34 -2.36 16 17 C -0.06 -0.55 10.03 -39.53 -0.40 -0.95 16 18 C -0.17 -1.43 10.02 -39.63 -0.40 -1.83 16 19 C -0.04 -0.35 9.61 -39.19 -0.38 -0.73 16 20 C -0.19 -2.21 5.89 -104.83 -0.62 -2.82 16 21 C 0.54 6.08 8.25 34.45 0.28 6.36 16 22 O -0.52 -7.11 14.54 -19.27 -0.28 -7.39 16 23 O -0.51 -3.94 12.69 -40.67 -0.52 -4.45 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.40 6.47 8.49 -40.82 -0.35 6.12 16 30 H 0.42 6.05 5.84 -40.82 -0.24 5.81 16 31 H 0.16 2.44 5.81 -52.49 -0.31 2.14 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.14 0.96 7.62 -52.49 -0.40 0.56 16 35 H 0.41 1.41 9.11 45.56 0.42 1.82 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -33.19 309.59 -7.41 -40.60 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -2.95 Total: 9.11 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.68 Total: 2.40 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.30 Total: -49.53 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.72 Total: -23.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.19 -7.41 -40.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.439 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds