Wall clock time and date at job start Mon Mar 30 2020 23:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47036 * 240.00102 * 3 2 1 5 5 H 1.48499 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47273 * 119.99581 * 3 2 1 7 7 C 1.37880 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47275 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46863 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99863 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00196 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00420 * 180.27443 * 12 11 10 15 15 C 1.39242 * 120.00696 * 174.08131 * 14 12 11 16 16 C 1.38854 * 120.16272 * 334.71736 * 15 14 12 17 17 C 1.38016 * 120.07491 * 179.97438 * 16 15 14 18 18 C 1.38591 * 120.41379 * 359.97438 * 17 16 15 19 19 C 1.37757 * 120.34564 * 0.02562 * 18 17 16 20 20 C 1.39766 * 119.91043 * 359.72142 * 19 18 17 21 21 C 1.47370 * 120.20503 * 180.25099 * 20 19 18 22 22 O 1.21510 * 120.00480 * 185.19954 * 21 20 19 23 23 O 1.34763 * 120.00168 * 5.20623 * 21 20 19 24 24 H 0.96996 * 120.00401 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46810 * 59.99305 * 9 7 2 26 26 H 1.08998 * 109.46695 * 299.99985 * 9 7 2 27 27 H 1.08996 * 109.46969 * 60.00006 * 10 9 7 28 28 H 1.09007 * 109.46764 * 299.99757 * 10 9 7 29 29 H 0.97003 * 120.00515 * 359.97438 * 11 10 9 30 30 H 0.97008 * 119.99605 * 354.07840 * 14 12 11 31 31 H 1.07999 * 119.96970 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.79592 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.82514 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.04456 * 180.02562 * 19 18 17 35 35 H 0.96694 * 117.00566 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 -0.0001 12 6 2.1867 -6.0979 0.0003 13 8 3.4026 -6.0980 0.0007 14 7 1.5130 -7.2651 -0.0058 15 6 2.2042 -8.4675 -0.1298 16 6 3.4451 -8.4980 -0.7521 17 6 4.1288 -9.6907 -0.8735 18 6 3.5853 -10.8648 -0.3766 19 6 2.3554 -10.8543 0.2439 20 6 1.6532 -9.6534 0.3792 21 6 0.3396 -9.6339 1.0468 22 8 -0.3103 -8.6077 1.0793 23 8 -0.1410 -10.7541 1.6214 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.5428 -4.9309 0.0000 30 1 0.5464 -7.2676 0.0761 31 1 3.8758 -7.5874 -1.1416 32 1 5.0935 -9.7093 -1.3587 33 1 4.1284 -11.7928 -0.4771 34 1 1.9366 -11.7720 0.6297 35 1 -1.0072 -10.6925 2.0468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609047.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:07 Heat of formation + Delta-G solvation = -117.963163 kcal Electronic energy + Delta-G solvation = -20583.670761 eV Core-core repulsion = 17159.678147 eV Total energy + Delta-G solvation = -3423.992614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19773 -40.99594 -39.43211 -37.30808 -36.77311 -35.72589 -34.87067 -32.40545 -31.89085 -30.24557 -26.83935 -25.57738 -24.30144 -22.93994 -22.34517 -21.95180 -19.52821 -19.16020 -18.76076 -18.42945 -18.08611 -17.04918 -16.67425 -16.52587 -16.39682 -15.78678 -15.64382 -15.28039 -15.07051 -14.88761 -14.28929 -14.14405 -13.88155 -13.25458 -13.09090 -12.94292 -12.64753 -12.61996 -12.53860 -12.29213 -11.81228 -11.69805 -11.59288 -11.44480 -11.07195 -10.61490 -10.16366 -10.08040 -9.13790 -8.24726 -6.35780 -0.37324 0.34253 1.41061 1.44635 1.47867 1.49479 1.54395 1.92779 2.01553 2.40507 2.82320 3.10129 3.11667 3.74253 4.04126 4.09922 4.30620 4.39807 4.45175 4.47595 4.57547 4.81928 4.94338 5.05815 5.19061 5.29159 5.40348 5.43986 5.50506 5.55342 5.56391 5.75845 5.91664 5.93938 6.13976 6.76840 6.83268 6.91232 7.31584 7.33928 8.87221 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003259 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.697337 B = 8590.003579 C = 9403.243260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.725 5.725 12 C 0.696 3.304 13 O -0.606 6.606 14 N -0.672 5.672 15 C 0.217 3.783 16 C -0.174 4.174 17 C -0.051 4.051 18 C -0.151 4.151 19 C -0.029 4.029 20 C -0.194 4.194 21 C 0.539 3.461 22 O -0.553 6.553 23 O -0.495 6.495 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.007 0.993 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.407 0.593 30 H 0.423 0.577 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -26.302 0.013 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.015 4.015 10 C 0.035 3.965 11 N -0.379 5.379 12 C 0.397 3.603 13 O -0.486 6.486 14 N -0.325 5.325 15 C 0.118 3.882 16 C -0.195 4.195 17 C -0.070 4.070 18 C -0.170 4.170 19 C -0.048 4.048 20 C -0.198 4.198 21 C 0.386 3.614 22 O -0.446 6.446 23 O -0.309 6.309 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.242 0.758 30 H 0.269 0.731 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 3.400 -25.825 -0.147 26.049 hybrid contribution -1.451 1.454 0.376 2.088 sum 1.949 -24.371 0.228 24.450 Atomic orbital electron populations 1.70058 1.07660 1.28122 1.50905 1.25907 0.95796 1.03233 0.94336 0.85460 0.78252 0.77894 0.79215 1.19164 1.20672 1.19264 1.21430 0.93716 0.91690 1.51732 0.91939 1.19144 0.94280 0.91763 0.96349 1.21207 0.94670 0.80298 1.00283 1.45344 1.10627 1.04479 1.77441 1.16142 0.85330 0.80995 0.77866 1.90835 1.12590 1.86781 1.58403 1.43144 1.12474 1.02978 1.73932 1.17870 0.93064 0.83726 0.93565 1.21483 0.94891 1.00894 1.02248 1.21694 0.99654 0.90966 0.94639 1.21523 0.95890 0.99514 1.00077 1.21595 0.93476 0.96128 0.93572 1.18848 0.95951 0.94968 1.10046 1.20744 0.85355 0.80594 0.74689 1.90663 1.60559 1.34056 1.59363 1.84492 1.42391 1.36452 1.67536 0.92525 0.97295 0.97508 0.93248 0.92845 0.75810 0.73135 0.85090 0.82571 0.81251 0.81434 0.70310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.15 5.09 29.85 0.15 1.30 16 10 C 0.16 7.05 5.61 86.38 0.48 7.54 16 11 N -0.73 -27.57 5.56 -478.55 -2.66 -30.23 16 12 C 0.70 26.27 8.36 179.06 1.50 27.76 16 13 O -0.61 -25.90 13.52 -3.99 -0.05 -25.96 16 14 N -0.67 -21.28 4.96 -316.61 -1.57 -22.85 16 15 C 0.22 6.12 6.43 38.62 0.25 6.37 16 16 C -0.17 -4.70 8.69 22.36 0.19 -4.50 16 17 C -0.05 -0.91 10.03 22.30 0.22 -0.68 16 18 C -0.15 -1.97 10.02 22.24 0.22 -1.75 16 19 C -0.03 -0.44 9.61 22.53 0.22 -0.22 16 20 C -0.19 -4.30 5.89 -20.00 -0.12 -4.42 16 21 C 0.54 11.49 8.25 70.23 0.58 12.07 16 22 O -0.55 -14.96 14.54 19.80 0.29 -14.67 16 23 O -0.50 -6.30 12.69 -56.74 -0.72 -7.02 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.41 13.86 8.49 -92.71 -0.79 13.07 16 30 H 0.42 12.65 5.84 -92.70 -0.54 12.11 16 31 H 0.13 4.26 5.81 -2.91 -0.02 4.24 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.17 1.52 7.62 -2.91 -0.02 1.49 16 35 H 0.43 1.81 9.11 -74.06 -0.67 1.13 16 Total: -1.00 -73.25 309.59 1.15 -72.10 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.84 Total: 24.03 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 4.40 Total: 13.59 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.95 Total: -108.03 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.49 Total: -47.65 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.25 1.15 -72.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609047.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.868 kcal (2) G-P(sol) polarization free energy of solvation -73.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds