Wall clock time and date at job start Tue Mar 31 2020 00:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48501 * 109.47421 * 269.99926 * 3 2 1 5 5 H 1.48508 * 109.46972 * 29.99975 * 3 2 1 6 6 H 1.48502 * 109.47328 * 149.99803 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00283 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47198 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99854 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99848 * 180.02562 * 12 11 10 15 15 C 1.39565 * 119.99802 * 185.26304 * 14 12 11 16 16 C 1.39345 * 120.82684 * 212.51903 * 15 14 12 17 17 C 1.38310 * 119.27752 * 180.02562 * 16 15 14 18 18 N 1.31602 * 120.98881 * 0.02562 * 17 16 15 19 19 C 1.32834 * 121.81382 * 359.66249 * 18 17 16 20 20 C 1.48084 * 119.69656 * 180.31364 * 19 18 17 21 21 O 1.21420 * 119.99979 * 180.31758 * 20 19 18 22 22 O 1.34681 * 119.99790 * 0.30862 * 20 19 18 23 23 C 1.39122 * 120.60585 * 0.63003 * 19 18 17 24 24 H 0.96993 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47158 * 60.00401 * 9 7 2 26 26 H 1.08997 * 109.47042 * 299.99537 * 9 7 2 27 27 H 1.09003 * 109.47541 * 60.00016 * 10 9 7 28 28 H 1.09003 * 109.47465 * 299.99833 * 10 9 7 29 29 H 1.09001 * 109.47346 * 59.99948 * 11 10 9 30 30 H 1.08997 * 109.46996 * 299.99517 * 11 10 9 31 31 H 0.97002 * 120.00158 * 5.26010 * 14 12 11 32 32 H 1.08004 * 120.35965 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.50633 * 180.02562 * 17 16 15 34 34 H 0.96699 * 116.99603 * 179.97438 * 22 20 19 35 35 H 1.08007 * 120.51398 * 179.68037 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 6 6.0540 -4.0573 0.0002 13 8 5.2659 -4.9791 0.0002 14 7 7.3791 -4.3035 0.0005 15 6 7.8453 -5.6142 -0.1110 16 6 9.0236 -6.0091 0.5192 17 6 9.4564 -7.3160 0.3868 18 7 8.7728 -8.1874 -0.3241 19 6 7.6415 -7.8574 -0.9371 20 6 6.9064 -8.8775 -1.7193 21 8 5.8748 -8.5804 -2.2866 22 8 7.3823 -10.1347 -1.8017 23 6 7.1444 -6.5605 -0.8563 24 1 -0.4850 0.8399 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6586 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8907 29 1 5.9150 -2.1226 0.8909 30 1 5.9149 -2.1226 -0.8890 31 1 8.0087 -3.5697 0.0783 32 1 9.5932 -5.3020 1.1041 33 1 10.3690 -7.6261 0.8741 34 1 6.8676 -10.7656 -2.3234 35 1 6.2270 -6.2926 -1.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:49 Heat of formation + Delta-G solvation = -96.847031 kcal Electronic energy + Delta-G solvation = -20225.172138 eV Core-core repulsion = 16802.095189 eV Total energy + Delta-G solvation = -3423.076950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34329 -40.22863 -39.22282 -36.34928 -35.65408 -34.45044 -32.28162 -31.94351 -31.24243 -28.48569 -25.74205 -24.75404 -23.31260 -21.91575 -20.88617 -20.03498 -18.72577 -18.21803 -17.37313 -16.68073 -16.51398 -16.28855 -16.06226 -15.88885 -15.39013 -14.59773 -14.33324 -14.13185 -13.77520 -13.69621 -13.53848 -12.70383 -12.52552 -12.11768 -11.84736 -11.78363 -11.32562 -11.11580 -11.08145 -10.85432 -10.42436 -10.04508 -9.90850 -9.78346 -9.68413 -9.54794 -9.19704 -8.99730 -8.55002 -6.04212 -4.02717 0.14984 0.78935 2.08207 2.44155 2.53058 2.78104 3.28203 3.35409 3.37320 3.47257 3.94182 4.42451 4.43181 4.47834 4.59942 4.70946 5.04498 5.13121 5.28355 5.34124 5.39099 5.40602 5.64255 5.88363 5.92738 6.15051 6.30079 6.44006 6.56509 6.82226 7.00628 7.28653 7.31767 7.37106 7.69939 7.77530 7.91346 8.54580 9.02301 9.57189 11.09466 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.003115 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.894036 B = 8987.592630 C = 9789.435406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.090 4.090 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.502 6.502 14 N -0.679 5.679 15 C 0.194 3.806 16 C -0.176 4.176 17 C 0.116 3.884 18 N -0.452 5.452 19 C 0.106 3.894 20 C 0.542 3.458 21 O -0.496 6.496 22 O -0.494 6.494 23 C -0.111 4.111 24 H 0.263 0.737 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.147 0.853 33 H 0.170 0.830 34 H 0.413 0.587 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.891 -12.674 -0.214 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.128 4.128 11 C -0.178 4.178 12 C 0.301 3.699 13 O -0.374 6.374 14 N -0.325 5.325 15 C 0.090 3.910 16 C -0.198 4.198 17 C -0.044 4.044 18 N -0.166 5.166 19 C -0.029 4.029 20 C 0.383 3.617 21 O -0.382 6.382 22 O -0.304 6.304 23 C -0.134 4.134 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.165 0.835 33 H 0.187 0.813 34 H 0.271 0.729 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.271 -13.650 -0.259 26.980 hybrid contribution 0.088 1.800 -0.159 1.809 sum 23.359 -11.850 -0.418 26.196 Atomic orbital electron populations 1.69919 1.06325 1.26867 1.51096 1.25056 0.94749 0.99172 0.94649 0.86756 0.80268 0.83643 0.78423 1.20324 1.21419 1.19072 1.21143 0.89440 0.94606 1.50714 0.90898 1.19595 0.97453 0.91842 0.96187 1.21327 0.88636 1.00001 1.02863 1.21935 1.01152 0.90379 1.04374 1.21644 0.80517 0.93576 0.74188 1.90768 1.54665 1.46506 1.45462 1.43820 1.09004 1.06020 1.73700 1.17900 0.93590 0.86073 0.93412 1.22247 0.97887 0.98768 1.00943 1.22653 0.98777 0.88374 0.94639 1.67655 1.05250 1.36821 1.06835 1.19735 0.93359 0.90872 0.98968 1.20400 0.82076 0.81495 0.77740 1.90968 1.23072 1.80852 1.43313 1.84659 1.55635 1.20689 1.69427 1.22153 1.02043 0.91881 0.97354 0.92725 0.96589 0.97006 0.91813 0.91842 0.88683 0.88563 0.74566 0.83506 0.81310 0.72861 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.67 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.09 -1.76 4.44 -26.73 -0.12 -1.87 16 11 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 12 C 0.51 6.98 7.60 -10.98 -0.08 6.89 16 13 O -0.50 -9.07 13.68 5.56 0.08 -8.99 16 14 N -0.68 -6.48 5.35 -9.72 -0.05 -6.53 16 15 C 0.19 2.04 6.33 -83.51 -0.53 1.51 16 16 C -0.18 -1.30 10.06 -39.14 -0.39 -1.69 16 17 C 0.12 0.92 11.17 -17.62 -0.20 0.72 16 18 N -0.45 -5.09 10.12 -9.89 -0.10 -5.19 16 19 C 0.11 1.35 6.74 -83.07 -0.56 0.79 16 20 C 0.54 6.91 8.32 34.77 0.29 7.20 16 21 O -0.50 -7.69 17.11 -19.20 -0.33 -8.02 16 22 O -0.49 -4.72 13.24 -40.44 -0.54 -5.25 16 23 C -0.11 -1.47 8.26 -38.84 -0.32 -1.79 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 27 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.42 2.29 8.82 -40.82 -0.36 1.93 16 32 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.41 1.85 9.11 45.56 0.42 2.26 16 35 H 0.16 2.55 6.05 -52.48 -0.32 2.23 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -37.60 313.12 -5.88 -43.48 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.15 Total: 0.61 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.61 Total: -4.16 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.62 Total: -39.05 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.79 Total: -22.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -37.60 -5.88 -43.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.371 kcal (2) G-P(sol) polarization free energy of solvation -37.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds