Wall clock time and date at job start Tue Mar 31 2020 00:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99913 * 2 1 4 4 H 1.48501 * 109.47421 * 269.99926 * 3 2 1 5 5 H 1.48508 * 109.46972 * 29.99975 * 3 2 1 6 6 H 1.48502 * 109.47328 * 149.99803 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00283 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.50709 * 109.47198 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99854 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99848 * 180.02562 * 12 11 10 15 15 C 1.39565 * 119.99802 * 185.26304 * 14 12 11 16 16 C 1.39345 * 120.82684 * 212.51903 * 15 14 12 17 17 C 1.38310 * 119.27752 * 180.02562 * 16 15 14 18 18 N 1.31602 * 120.98881 * 0.02562 * 17 16 15 19 19 C 1.32834 * 121.81382 * 359.66249 * 18 17 16 20 20 C 1.48084 * 119.69656 * 180.31364 * 19 18 17 21 21 O 1.21420 * 119.99979 * 180.31758 * 20 19 18 22 22 O 1.34681 * 119.99790 * 0.30862 * 20 19 18 23 23 C 1.39122 * 120.60585 * 0.63003 * 19 18 17 24 24 H 0.96993 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47158 * 60.00401 * 9 7 2 26 26 H 1.08997 * 109.47042 * 299.99537 * 9 7 2 27 27 H 1.09003 * 109.47541 * 60.00016 * 10 9 7 28 28 H 1.09003 * 109.47465 * 299.99833 * 10 9 7 29 29 H 1.09001 * 109.47346 * 59.99948 * 11 10 9 30 30 H 1.08997 * 109.46996 * 299.99517 * 11 10 9 31 31 H 0.97002 * 120.00158 * 5.26010 * 14 12 11 32 32 H 1.08004 * 120.35965 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.50633 * 180.02562 * 17 16 15 34 34 H 0.96699 * 116.99603 * 179.97438 * 22 20 19 35 35 H 1.08007 * 120.51398 * 179.68037 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 6 6.0540 -4.0573 0.0002 13 8 5.2659 -4.9791 0.0002 14 7 7.3791 -4.3035 0.0005 15 6 7.8453 -5.6142 -0.1110 16 6 9.0236 -6.0091 0.5192 17 6 9.4564 -7.3160 0.3868 18 7 8.7728 -8.1874 -0.3241 19 6 7.6415 -7.8574 -0.9371 20 6 6.9064 -8.8775 -1.7193 21 8 5.8748 -8.5804 -2.2866 22 8 7.3823 -10.1347 -1.8017 23 6 7.1444 -6.5605 -0.8563 24 1 -0.4850 0.8399 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6586 -3.1502 -0.8892 28 1 3.6580 -3.1505 0.8907 29 1 5.9150 -2.1226 0.8909 30 1 5.9149 -2.1226 -0.8890 31 1 8.0087 -3.5697 0.0783 32 1 9.5932 -5.3020 1.1041 33 1 10.3690 -7.6261 0.8741 34 1 6.8676 -10.7656 -2.3234 35 1 6.2270 -6.2926 -1.3595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:48 Heat of formation + Delta-G solvation = -127.169036 kcal Electronic energy + Delta-G solvation = -20226.486999 eV Core-core repulsion = 16802.095189 eV Total energy + Delta-G solvation = -3424.391810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21019 -41.21954 -40.14948 -37.26965 -36.65958 -36.09657 -34.19885 -32.71369 -32.28042 -30.07872 -26.61230 -26.16743 -24.47253 -22.86386 -22.16534 -21.44237 -19.61923 -19.21359 -18.82864 -18.25986 -17.43771 -17.12931 -16.96969 -16.86290 -16.48327 -16.18452 -15.47372 -15.12621 -14.97854 -14.76159 -14.68767 -14.50437 -13.84774 -13.34450 -13.25380 -12.74190 -12.72685 -12.51973 -12.27672 -12.07940 -11.82568 -11.74827 -11.50519 -11.35211 -11.25142 -10.74983 -10.67052 -10.40428 -9.83617 -8.27545 -6.33795 -0.66624 -0.01385 1.19150 1.39272 1.43222 1.52025 1.55021 1.65717 1.92928 2.39626 2.68673 3.07834 3.22321 3.59460 3.77408 3.81603 3.87403 4.09570 4.23394 4.35860 4.40139 4.65909 4.74776 4.86298 4.90201 4.94882 5.02417 5.15424 5.35292 5.52131 5.56930 5.59864 5.68283 6.25278 6.30847 6.58581 6.75745 6.89967 6.99754 7.30768 8.90415 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.003115 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.894036 B = 8987.592630 C = 9789.435406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.230 1.230 7 C -0.542 4.542 8 H 0.016 0.984 9 C -0.009 4.009 10 C -0.086 4.086 11 C -0.126 4.126 12 C 0.513 3.487 13 O -0.559 6.559 14 N -0.654 5.654 15 C 0.178 3.822 16 C -0.143 4.143 17 C 0.118 3.882 18 N -0.466 5.466 19 C 0.084 3.916 20 C 0.543 3.457 21 O -0.538 6.538 22 O -0.486 6.486 23 C -0.135 4.135 24 H 0.266 0.734 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.441 0.559 32 H 0.197 0.803 33 H 0.215 0.785 34 H 0.433 0.567 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.011 -10.753 1.045 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.153 1.153 7 C -0.580 4.580 8 H 0.034 0.966 9 C -0.046 4.046 10 C -0.124 4.124 11 C -0.165 4.165 12 C 0.303 3.697 13 O -0.435 6.435 14 N -0.302 5.302 15 C 0.074 3.926 16 C -0.165 4.165 17 C -0.042 4.042 18 N -0.180 5.180 19 C -0.051 4.051 20 C 0.386 3.614 21 O -0.428 6.428 22 O -0.298 6.298 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.283 0.717 32 H 0.214 0.786 33 H 0.231 0.769 34 H 0.295 0.705 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 28.471 -11.760 0.996 30.820 hybrid contribution -1.493 1.044 -0.518 1.894 sum 26.978 -10.715 0.477 29.032 Atomic orbital electron populations 1.70118 1.08857 1.28322 1.52737 1.26256 0.95753 1.04335 0.93834 0.85460 0.79799 0.76754 0.79359 1.19016 1.21455 1.15259 1.21590 0.92955 0.92723 1.50733 0.96562 1.19540 0.93232 0.94191 0.97619 1.21091 0.93582 0.97365 1.00354 1.21770 0.96129 0.90939 1.07657 1.21647 0.81549 0.93026 0.73472 1.90777 1.56495 1.47974 1.48300 1.43421 1.07887 1.06656 1.72267 1.18080 0.94695 0.85817 0.94027 1.22728 0.95807 0.99287 0.98651 1.23513 0.99331 0.88222 0.93137 1.67691 1.04787 1.38083 1.07397 1.19679 0.94463 0.90625 1.00306 1.20630 0.81458 0.82279 0.77020 1.90940 1.24935 1.81664 1.45288 1.84616 1.55687 1.19977 1.69511 1.22002 1.01610 0.93289 0.98913 0.92535 0.94631 0.95040 0.94746 0.94398 0.85014 0.85421 0.71742 0.78584 0.76874 0.70527 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.03 13.96 21.45 0.30 -61.73 16 2 C -0.01 -0.36 5.47 84.65 0.46 0.10 16 3 Si 0.96 43.03 27.47 68.60 1.88 44.91 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 7 C -0.54 -32.25 9.66 25.60 0.25 -32.00 16 8 H 0.02 1.09 7.99 -2.91 -0.02 1.07 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.09 -3.37 4.44 30.59 0.14 -3.24 16 11 C -0.13 -3.04 5.70 29.85 0.17 -2.86 16 12 C 0.51 13.45 7.60 87.66 0.67 14.12 16 13 O -0.56 -21.23 13.68 -3.03 -0.04 -21.28 16 14 N -0.65 -10.57 5.35 -303.05 -1.62 -12.19 16 15 C 0.18 3.35 6.33 38.45 0.24 3.60 16 16 C -0.14 -1.43 10.06 22.55 0.23 -1.21 16 17 C 0.12 1.39 11.17 84.74 0.95 2.33 16 18 N -0.47 -9.68 10.12 -185.21 -1.87 -11.55 16 19 C 0.08 2.18 6.74 41.82 0.28 2.46 16 20 C 0.54 14.71 8.32 70.44 0.59 15.30 16 21 O -0.54 -18.29 17.11 20.09 0.34 -17.95 16 22 O -0.49 -9.39 13.24 -55.90 -0.74 -10.13 16 23 C -0.13 -3.67 8.26 22.75 0.19 -3.48 16 24 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 25 H 0.04 1.46 7.20 -2.39 -0.02 1.45 16 26 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 27 H 0.03 1.51 8.10 -2.39 -0.02 1.49 16 28 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 29 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.44 2.65 8.82 -92.71 -0.82 1.83 16 32 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 33 H 0.21 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.43 3.94 9.11 -74.06 -0.67 3.27 16 35 H 0.13 4.40 6.05 -2.91 -0.02 4.38 16 Total: -1.00 -91.43 313.12 2.13 -89.30 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -0.40 Total: 5.76 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.28 Total: -5.15 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.19 Total: -85.47 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.44 Total: -49.35 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -91.43 2.13 -89.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.865 kcal (2) G-P(sol) polarization free energy of solvation -91.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds