Wall clock time and date at job start Tue Mar 31 2020 00:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00383 * 2 1 4 4 H 1.48498 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47083 * 300.00598 * 3 2 1 6 6 H 1.48496 * 109.46598 * 60.00382 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47275 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46984 * 180.02562 * 11 10 9 13 13 O 1.21260 * 120.00506 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99693 * 180.02562 * 12 11 10 15 15 C 1.38948 * 119.99613 * 175.17546 * 14 12 11 16 16 C 1.39277 * 119.52004 * 185.09232 * 15 14 12 17 17 C 1.36930 * 119.38591 * 179.97438 * 16 15 14 18 18 C 1.40331 * 118.47665 * 0.02562 * 17 16 15 19 19 C 1.47482 * 120.48824 * 179.97438 * 18 17 16 20 20 O 1.21502 * 119.99584 * 359.97438 * 19 18 17 21 21 O 1.34739 * 119.99776 * 180.02562 * 19 18 17 22 22 C 1.39622 * 119.02359 * 359.97438 * 18 17 16 23 23 N 1.31653 * 120.50307 * 359.74309 * 22 18 17 24 24 H 0.97001 * 119.99513 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46936 * 59.99990 * 9 7 2 26 26 H 1.09000 * 109.46752 * 300.00686 * 9 7 2 27 27 H 1.09004 * 109.46864 * 59.99745 * 10 9 7 28 28 H 1.08999 * 109.47113 * 300.00196 * 10 9 7 29 29 H 1.08996 * 109.47187 * 59.99454 * 11 10 9 30 30 H 1.09007 * 109.46969 * 299.99768 * 11 10 9 31 31 H 0.96999 * 119.99797 * 354.89411 * 14 12 11 32 32 H 1.08003 * 120.30916 * 359.96411 * 16 15 14 33 33 H 1.08003 * 120.76355 * 180.02562 * 17 16 15 34 34 H 0.96704 * 116.99573 * 179.97438 * 21 19 18 35 35 H 1.08006 * 119.74424 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0005 13 8 3.6516 -5.9111 -0.0001 14 7 2.0100 -7.4033 -0.0015 15 6 2.9090 -8.4580 -0.1021 16 6 2.4290 -9.7610 -0.2095 17 6 3.3174 -10.7982 -0.3090 18 6 4.6901 -10.5068 -0.2985 19 6 5.6858 -11.5898 -0.4026 20 8 5.3196 -12.7444 -0.4979 21 8 7.0013 -11.2989 -0.3909 22 6 5.0994 -9.1765 -0.1880 23 7 4.2108 -8.2091 -0.1001 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8537 -5.0446 -0.8913 30 1 0.8531 -5.0451 0.8887 31 1 1.0594 -7.5816 0.0722 32 1 1.3660 -9.9516 -0.2141 33 1 2.9697 -11.8172 -0.3938 34 1 7.6159 -12.0422 -0.4613 35 1 6.1530 -8.9391 -0.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:13 Heat of formation + Delta-G solvation = -93.489475 kcal Electronic energy + Delta-G solvation = -19931.024108 eV Core-core repulsion = 16508.092753 eV Total energy + Delta-G solvation = -3422.931355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27944 -40.25367 -38.97929 -36.43264 -35.19221 -34.25257 -32.92106 -32.12427 -30.88544 -28.05728 -25.36972 -24.31951 -23.66620 -21.95369 -20.75459 -19.93815 -18.60626 -18.38815 -17.58332 -17.03625 -16.23089 -16.05434 -15.76712 -15.64139 -14.97069 -14.44367 -14.39350 -14.19936 -13.72380 -13.40994 -13.21895 -13.07326 -12.33395 -11.95442 -11.87610 -11.49949 -11.13273 -10.98904 -10.84600 -10.69065 -10.54429 -10.33189 -10.24352 -9.73498 -9.46089 -9.22779 -9.01805 -8.66832 -8.35090 -6.00585 -4.01944 0.20223 0.93235 2.14570 2.59170 2.72045 2.76933 3.32359 3.39845 3.45605 3.58061 4.05663 4.42390 4.47091 4.48425 4.54769 4.88690 4.96380 5.22431 5.35870 5.46657 5.57913 5.58843 5.69170 5.86038 6.10059 6.12087 6.37184 6.64340 6.83791 6.93653 7.09538 7.52363 7.66795 7.71426 7.78376 7.99696 8.20611 8.43334 9.05322 9.62384 11.10934 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.002575 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.792874 B =10870.101385 C =11452.778881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.136 4.136 12 C 0.499 3.501 13 O -0.458 6.458 14 N -0.663 5.663 15 C 0.406 3.594 16 C -0.226 4.226 17 C 0.018 3.982 18 C -0.234 4.234 19 C 0.540 3.460 20 O -0.522 6.522 21 O -0.511 6.511 22 C 0.203 3.797 23 N -0.486 5.486 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.421 0.579 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.415 0.585 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.112 -24.240 -0.407 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.135 4.135 11 C -0.176 4.176 12 C 0.286 3.714 13 O -0.325 6.325 14 N -0.309 5.309 15 C 0.173 3.827 16 C -0.249 4.249 17 C -0.007 4.007 18 C -0.240 4.240 19 C 0.384 3.616 20 O -0.412 6.412 21 O -0.323 6.323 22 C 0.043 3.957 23 N -0.201 5.201 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.258 0.742 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.274 0.726 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.681 -22.888 -0.344 23.585 hybrid contribution -0.072 -0.597 -0.083 0.607 sum 5.609 -23.484 -0.427 24.149 Atomic orbital electron populations 1.69968 1.06044 1.26480 1.51233 1.25023 0.94864 0.99303 0.95350 0.86533 0.80253 0.83707 0.77533 1.19653 1.21034 1.21029 1.21299 0.93251 0.90943 1.50115 0.92475 1.19134 0.93928 0.91416 0.97197 1.21487 0.98751 0.91268 1.01947 1.21919 0.97969 0.93489 1.04218 1.21753 0.91199 0.82929 0.75508 1.90803 1.16670 1.83287 1.41694 1.44140 1.10064 1.05341 1.71357 1.18981 0.88537 0.86795 0.88402 1.21212 1.01778 0.91092 1.10817 1.21139 0.90540 1.00231 0.88782 1.19923 0.92956 0.93763 1.17316 1.20514 0.81490 0.87698 0.71857 1.90889 1.81261 1.22040 1.47010 1.84565 1.17497 1.44760 1.85501 1.23232 0.99885 0.86189 0.86422 1.67976 1.00126 1.35118 1.16836 0.93098 0.96536 0.96537 0.92474 0.92498 0.88827 0.88880 0.74212 0.83540 0.83233 0.72589 0.80889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.98 4.44 -26.74 -0.12 -2.10 16 11 C -0.14 -2.04 5.70 -27.89 -0.16 -2.19 16 12 C 0.50 7.48 7.79 -10.98 -0.09 7.40 16 13 O -0.46 -8.82 14.22 5.58 0.08 -8.75 16 14 N -0.66 -7.20 5.37 -11.44 -0.06 -7.26 16 15 C 0.41 4.72 7.41 -154.90 -1.15 3.57 16 16 C -0.23 -1.86 9.86 -39.67 -0.39 -2.25 16 17 C 0.02 0.16 9.65 -39.27 -0.38 -0.22 16 18 C -0.23 -2.32 5.89 -104.83 -0.62 -2.93 16 19 C 0.54 5.15 8.27 34.50 0.29 5.43 16 20 O -0.52 -6.19 17.20 -19.27 -0.33 -6.52 16 21 O -0.51 -3.47 12.70 -40.60 -0.52 -3.99 16 22 C 0.20 2.27 10.79 -17.11 -0.18 2.09 16 23 N -0.49 -6.82 7.85 -12.05 -0.09 -6.91 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.42 2.74 8.69 -40.82 -0.35 2.39 16 32 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.15 1.05 7.73 -52.48 -0.41 0.64 16 34 H 0.42 0.94 9.11 45.56 0.42 1.35 16 35 H 0.17 1.64 7.62 -52.48 -0.40 1.24 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -37.03 316.85 -7.02 -44.06 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.24 Total: -1.80 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.35 Total: -4.40 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.58 Total: -40.16 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.77 Total: -19.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -37.03 -7.02 -44.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.433 kcal (2) G-P(sol) polarization free energy of solvation -37.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds