Wall clock time and date at job start Tue Mar 31 2020 00:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00383 * 2 1 4 4 H 1.48498 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47083 * 300.00598 * 3 2 1 6 6 H 1.48496 * 109.46598 * 60.00382 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47300 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47275 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.46984 * 180.02562 * 11 10 9 13 13 O 1.21260 * 120.00506 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99693 * 180.02562 * 12 11 10 15 15 C 1.38948 * 119.99613 * 175.17546 * 14 12 11 16 16 C 1.39277 * 119.52004 * 185.09232 * 15 14 12 17 17 C 1.36930 * 119.38591 * 179.97438 * 16 15 14 18 18 C 1.40331 * 118.47665 * 0.02562 * 17 16 15 19 19 C 1.47482 * 120.48824 * 179.97438 * 18 17 16 20 20 O 1.21502 * 119.99584 * 359.97438 * 19 18 17 21 21 O 1.34739 * 119.99776 * 180.02562 * 19 18 17 22 22 C 1.39622 * 119.02359 * 359.97438 * 18 17 16 23 23 N 1.31653 * 120.50307 * 359.74309 * 22 18 17 24 24 H 0.97001 * 119.99513 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46936 * 59.99990 * 9 7 2 26 26 H 1.09000 * 109.46752 * 300.00686 * 9 7 2 27 27 H 1.09004 * 109.46864 * 59.99745 * 10 9 7 28 28 H 1.08999 * 109.47113 * 300.00196 * 10 9 7 29 29 H 1.08996 * 109.47187 * 59.99454 * 11 10 9 30 30 H 1.09007 * 109.46969 * 299.99768 * 11 10 9 31 31 H 0.96999 * 119.99797 * 354.89411 * 14 12 11 32 32 H 1.08003 * 120.30916 * 359.96411 * 16 15 14 33 33 H 1.08003 * 120.76355 * 180.02562 * 17 16 15 34 34 H 0.96704 * 116.99573 * 179.97438 * 21 19 18 35 35 H 1.08006 * 119.74424 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0005 13 8 3.6516 -5.9111 -0.0001 14 7 2.0100 -7.4033 -0.0015 15 6 2.9090 -8.4580 -0.1021 16 6 2.4290 -9.7610 -0.2095 17 6 3.3174 -10.7982 -0.3090 18 6 4.6901 -10.5068 -0.2985 19 6 5.6858 -11.5898 -0.4026 20 8 5.3196 -12.7444 -0.4979 21 8 7.0013 -11.2989 -0.3909 22 6 5.0994 -9.1765 -0.1880 23 7 4.2108 -8.2091 -0.1001 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 0.8537 -5.0446 -0.8913 30 1 0.8531 -5.0451 0.8887 31 1 1.0594 -7.5816 0.0722 32 1 1.3660 -9.9516 -0.2141 33 1 2.9697 -11.8172 -0.3938 34 1 7.6159 -12.0422 -0.4613 35 1 6.1530 -8.9391 -0.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:13 Heat of formation + Delta-G solvation = -119.819803 kcal Electronic energy + Delta-G solvation = -19932.165877 eV Core-core repulsion = 16508.092753 eV Total energy + Delta-G solvation = -3424.073124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12055 -41.10125 -39.96027 -37.11763 -36.33287 -35.94846 -34.06388 -33.65941 -31.82072 -29.72056 -26.61526 -25.28745 -24.99674 -22.90023 -22.09519 -21.26545 -19.43653 -19.20041 -18.51221 -18.27168 -17.93185 -17.00056 -16.69364 -16.66799 -16.40419 -15.73715 -15.55861 -15.14177 -14.73233 -14.55741 -14.28105 -14.12067 -13.81148 -13.71620 -13.13007 -12.66224 -12.60562 -12.52767 -12.38902 -11.96134 -11.89941 -11.53870 -11.50598 -11.30118 -11.10876 -11.09245 -10.53535 -10.16994 -9.50296 -8.19951 -6.29077 -0.59638 0.22005 1.29991 1.39539 1.40399 1.53692 1.73174 1.76884 2.06802 2.42133 2.78317 3.13434 3.23030 3.69751 3.77699 3.79449 3.95802 4.22306 4.27975 4.30018 4.56031 4.74211 4.84358 4.97888 5.00409 5.09386 5.11706 5.21653 5.53460 5.55144 5.58937 5.77462 5.88460 6.08684 6.29408 6.81231 6.86918 6.96276 7.23114 7.39563 8.91593 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045533 B = 0.002575 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.792874 B =10870.101385 C =11452.778881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.126 4.126 12 C 0.506 3.494 13 O -0.511 6.511 14 N -0.646 5.646 15 C 0.379 3.621 16 C -0.200 4.200 17 C 0.016 3.984 18 C -0.233 4.233 19 C 0.547 3.453 20 O -0.546 6.546 21 O -0.506 6.506 22 C 0.190 3.810 23 N -0.531 5.531 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.004 0.996 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.442 0.558 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.435 0.565 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 -25.610 -0.461 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.294 3.706 13 O -0.382 6.382 14 N -0.294 5.294 15 C 0.148 3.852 16 C -0.223 4.223 17 C -0.009 4.009 18 C -0.238 4.238 19 C 0.392 3.608 20 O -0.439 6.439 21 O -0.320 6.320 22 C 0.031 3.969 23 N -0.247 5.247 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.284 0.716 32 H 0.206 0.794 33 H 0.188 0.812 34 H 0.298 0.702 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.095 -24.311 -0.398 24.842 hybrid contribution 0.148 -0.261 -0.071 0.309 sum 5.243 -24.572 -0.470 25.130 Atomic orbital electron populations 1.70062 1.07394 1.27678 1.51734 1.25874 0.95819 1.02960 0.94801 0.85485 0.78907 0.79214 0.77983 1.19334 1.20127 1.20104 1.21727 0.93313 0.92898 1.50461 0.93201 1.19022 0.94192 0.92187 0.95748 1.21179 0.97704 0.92980 1.00384 1.21725 0.97575 0.90649 1.06582 1.21558 0.90172 0.84189 0.74714 1.90793 1.18553 1.84297 1.44516 1.43725 1.11197 1.03896 1.70532 1.19259 0.88083 0.87974 0.89923 1.21535 1.03759 0.89074 1.07894 1.21470 0.89983 1.01346 0.88094 1.20094 0.94020 0.93312 1.16377 1.20425 0.82150 0.87047 0.71179 1.90882 1.81816 1.22814 1.48366 1.84534 1.16827 1.45932 1.84734 1.23288 0.99935 0.86466 0.87232 1.67835 1.01816 1.36935 1.18078 0.92685 0.97836 0.97798 0.94045 0.94127 0.86511 0.86431 0.71644 0.79426 0.81169 0.70244 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.08 -3.53 4.44 30.59 0.14 -3.40 16 11 C -0.13 -3.63 5.70 29.85 0.17 -3.46 16 12 C 0.51 14.85 7.79 87.66 0.68 15.53 16 13 O -0.51 -20.14 14.22 -2.97 -0.04 -20.18 16 14 N -0.65 -12.78 5.37 -308.51 -1.66 -14.44 16 15 C 0.38 8.24 7.41 133.08 0.99 9.22 16 16 C -0.20 -2.67 9.86 22.21 0.22 -2.45 16 17 C 0.02 0.24 9.65 22.47 0.22 0.46 16 18 C -0.23 -4.30 5.89 -20.00 -0.12 -4.41 16 19 C 0.55 9.66 8.27 70.26 0.58 10.25 16 20 O -0.55 -12.12 17.20 19.83 0.34 -11.77 16 21 O -0.51 -6.17 12.70 -56.49 -0.72 -6.89 16 22 C 0.19 4.23 10.79 85.05 0.92 5.14 16 23 N -0.53 -14.89 7.85 -192.04 -1.51 -16.40 16 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 28 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.44 4.36 8.69 -92.71 -0.81 3.55 16 32 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.17 1.81 7.73 -2.91 -0.02 1.79 16 34 H 0.44 1.22 9.11 -74.05 -0.67 0.55 16 35 H 0.18 3.45 7.62 -2.91 -0.02 3.43 16 Total: -1.00 -82.02 316.85 3.03 -78.99 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -0.34 Total: 1.49 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.64 Total: -2.43 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.88 Total: -86.12 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.42 Total: -38.85 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.02 3.03 -78.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.829 kcal (2) G-P(sol) polarization free energy of solvation -82.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds