Wall clock time and date at job start Mon Mar 30 2020 23:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48500 * 109.46825 * 269.99748 * 3 2 1 5 5 H 1.48497 * 109.47132 * 29.99392 * 3 2 1 6 6 H 1.48495 * 109.47514 * 149.99487 * 3 2 1 7 7 C 1.37877 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00385 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47541 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00198 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99841 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99985 * 180.27368 * 11 10 9 14 14 C 1.39945 * 120.00030 * 174.09855 * 13 11 10 15 15 C 1.38895 * 120.06829 * 335.19247 * 14 13 11 16 16 C 1.38087 * 119.92745 * 180.02562 * 15 14 13 17 17 C 1.38302 * 120.07238 * 0.02562 * 16 15 14 18 18 C 1.38264 * 120.13984 * 359.97438 * 17 16 15 19 19 C 1.38131 * 120.06535 * 359.72725 * 18 17 16 20 20 C 1.50709 * 120.03154 * 180.29891 * 19 18 17 21 21 C 1.50701 * 109.46685 * 265.25348 * 20 19 18 22 22 O 1.20826 * 120.00266 * 359.97438 * 21 20 19 23 23 O 1.34237 * 119.99629 * 180.02562 * 21 20 19 24 24 H 0.96999 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46832 * 59.99974 * 9 7 2 26 26 H 1.09007 * 109.47086 * 300.00453 * 9 7 2 27 27 H 0.96999 * 120.00063 * 0.02562 * 10 9 7 28 28 H 0.97002 * 120.00220 * 354.10379 * 13 11 10 29 29 H 1.07993 * 120.03282 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.96582 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.92918 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.95975 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47261 * 25.24765 * 20 19 18 34 34 H 1.08997 * 109.47289 * 145.25244 * 20 19 18 35 35 H 0.96703 * 116.99643 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5583 -5.1056 0.0006 13 7 2.6295 -5.9077 0.0082 14 6 2.1673 -7.2228 0.1325 15 6 0.9472 -7.4765 0.7458 16 6 0.4941 -8.7752 0.8674 17 6 1.2540 -9.8228 0.3797 18 6 2.4689 -9.5736 -0.2313 19 6 2.9248 -8.2762 -0.3615 20 6 4.2461 -8.0049 -1.0337 21 6 5.3291 -7.9048 0.0095 22 8 5.0560 -8.0394 1.1787 23 8 6.5971 -7.6650 -0.3604 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 3.1567 -3.4355 0.0028 28 1 3.5803 -5.7336 -0.0731 29 1 0.3539 -6.6589 1.1279 30 1 -0.4544 -8.9732 1.3446 31 1 0.8975 -10.8377 0.4764 32 1 3.0598 -10.3938 -0.6115 33 1 4.4780 -8.8185 -1.7211 34 1 4.1867 -7.0676 -1.5869 35 1 7.2568 -7.6089 0.3445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:06 Heat of formation + Delta-G solvation = -121.634105 kcal Electronic energy + Delta-G solvation = -20919.574374 eV Core-core repulsion = 17495.422577 eV Total energy + Delta-G solvation = -3424.151798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99598 -41.05998 -39.63495 -37.05024 -36.35281 -35.85382 -34.39310 -33.82144 -30.86884 -29.33204 -28.58005 -25.13604 -23.93662 -23.45120 -21.88516 -21.65886 -19.88333 -19.06247 -18.82856 -18.00230 -17.49501 -17.04935 -16.96316 -16.71323 -16.40904 -15.95024 -15.52934 -15.10774 -14.75820 -14.43187 -14.16182 -14.06439 -14.05479 -13.43192 -13.36874 -12.91534 -12.72540 -12.54431 -12.43076 -12.24601 -12.19747 -11.64660 -11.57902 -11.50038 -11.04742 -10.81839 -9.97179 -9.74871 -8.95810 -8.30091 -6.46784 0.30671 0.48325 1.22266 1.42866 1.45926 1.55902 1.64307 2.04810 2.19665 2.37920 2.98177 3.05424 3.29644 3.56197 3.86990 4.18869 4.29059 4.41053 4.50158 4.54392 4.69213 4.73037 4.98056 5.12527 5.22693 5.29524 5.40100 5.44003 5.55553 5.60314 5.65069 5.69203 5.80344 6.07988 6.14566 6.63386 7.02550 7.06236 7.23052 7.50690 8.82175 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.004098 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.462445 B = 6831.043447 C = 7958.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.715 5.715 11 C 0.691 3.309 12 O -0.618 6.618 13 N -0.672 5.672 14 C 0.170 3.830 15 C -0.167 4.167 16 C -0.101 4.101 17 C -0.143 4.143 18 C -0.081 4.081 19 C -0.123 4.123 20 C -0.071 4.071 21 C 0.480 3.520 22 O -0.543 6.543 23 O -0.510 6.510 24 H 0.269 0.731 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.406 0.594 28 H 0.413 0.587 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -19.578 -2.690 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.368 5.368 11 C 0.391 3.609 12 O -0.498 6.498 13 N -0.319 5.319 14 C 0.074 3.926 15 C -0.188 4.188 16 C -0.120 4.120 17 C -0.161 4.161 18 C -0.099 4.099 19 C -0.126 4.126 20 C -0.108 4.108 21 C 0.323 3.677 22 O -0.433 6.433 23 O -0.324 6.324 24 H 0.078 0.922 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.241 0.759 28 H 0.250 0.750 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.138 0.862 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 11.863 -19.578 -2.670 23.047 hybrid contribution 0.908 1.436 0.713 1.842 sum 12.771 -18.142 -1.957 22.272 Atomic orbital electron populations 1.70134 1.08253 1.28643 1.49763 1.26038 0.95764 1.03802 0.93773 0.85139 0.78417 0.76908 0.78639 1.19467 1.20986 1.18041 1.21576 0.94332 0.90361 1.53191 0.89799 1.18501 0.87992 0.82950 0.94389 1.45381 1.11243 1.03517 1.76635 1.16260 0.85044 0.81467 0.78134 1.90838 1.15993 1.84219 1.58767 1.42502 1.09753 1.03591 1.76048 1.17660 0.95351 0.82597 0.96983 1.21418 0.97114 0.98595 1.01641 1.21309 1.00433 0.91492 0.98763 1.21420 0.95056 0.99872 0.99787 1.21217 0.96211 0.95063 0.97424 1.19190 0.96955 0.92912 1.03568 1.20293 0.86328 1.08417 0.95805 1.23635 0.83469 0.71408 0.89154 1.90787 1.83454 1.47102 1.21979 1.84499 1.18682 1.82989 1.46192 0.92176 0.99026 0.99340 0.75900 0.75016 0.86989 0.84562 0.82705 0.82005 0.82528 0.86216 0.71064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.99 42.07 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.28 15.71 5.43 85.63 0.46 16.17 16 10 N -0.71 -31.02 5.55 -482.29 -2.68 -33.70 16 11 C 0.69 29.62 8.37 179.06 1.50 31.11 16 12 O -0.62 -31.83 13.51 -4.00 -0.05 -31.89 16 13 N -0.67 -21.86 5.00 -317.18 -1.58 -23.45 16 14 C 0.17 5.38 6.41 38.15 0.24 5.63 16 15 C -0.17 -5.86 8.72 22.39 0.20 -5.67 16 16 C -0.10 -2.74 10.04 22.25 0.22 -2.51 16 17 C -0.14 -2.92 10.04 22.29 0.22 -2.70 16 18 C -0.08 -1.54 9.68 22.25 0.22 -1.33 16 19 C -0.12 -2.83 4.39 -19.74 -0.09 -2.92 16 20 C -0.07 -1.09 5.32 29.10 0.15 -0.93 16 21 C 0.48 8.51 8.04 71.24 0.57 9.08 16 22 O -0.54 -14.26 16.79 21.96 0.37 -13.89 16 23 O -0.51 -6.04 13.42 -51.48 -0.69 -6.73 16 24 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 26 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 27 H 0.41 14.48 8.34 -92.71 -0.77 13.71 16 28 H 0.41 10.61 7.30 -92.71 -0.68 9.93 16 29 H 0.11 4.78 5.79 -2.91 -0.02 4.77 16 30 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.20 8.05 -2.38 -0.02 1.18 16 34 H 0.12 1.69 7.27 -2.39 -0.02 1.67 16 35 H 0.43 2.00 9.10 -74.05 -0.67 1.33 16 Total: -1.00 -80.05 311.80 1.12 -78.93 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.96 Total: 25.46 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 4.41 Total: 16.79 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -3.98 Total: -112.76 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.38 Total: -52.51 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -80.05 1.12 -78.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.705 kcal (2) G-P(sol) polarization free energy of solvation -80.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds