Wall clock time and date at job start Mon Mar 30 2020 23:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48494 * 109.46812 * 269.99998 * 3 2 1 5 5 H 1.48498 * 109.46956 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.47081 * 150.00000 * 3 2 1 7 7 C 1.39935 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 197.84194 * 7 2 1 9 9 C 1.41406 * 119.99740 * 17.83614 * 7 2 1 10 10 C 1.40787 * 120.20879 * 204.37107 * 9 7 2 11 11 C 1.37643 * 119.89194 * 179.97438 * 10 9 7 12 12 C 1.38520 * 120.32827 * 0.03979 * 11 10 9 13 13 C 1.39287 * 120.42422 * 359.97438 * 12 11 10 14 14 N 1.39687 * 119.95145 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47534 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99922 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00145 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00047 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47200 * 180.02562 * 19 18 16 21 21 O 1.20832 * 120.00011 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00214 * 180.02562 * 20 19 18 23 23 C 1.38321 * 120.09722 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.05393 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.83290 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78811 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99713 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.47384 * 300.00726 * 15 14 13 30 30 H 1.09001 * 109.46679 * 60.00063 * 15 14 13 31 31 H 0.97005 * 120.00247 * 0.02562 * 18 16 15 32 32 H 1.08998 * 109.47884 * 300.00191 * 19 18 16 33 33 H 1.09001 * 109.46860 * 60.00341 * 19 18 16 34 34 H 0.96693 * 117.00327 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.15860 * 179.72324 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2871 9 6 1.3519 -2.4072 -0.3740 10 6 1.8268 -3.6501 0.0863 11 6 1.1829 -4.8095 -0.2820 12 6 0.0694 -4.7602 -1.1045 13 6 -0.4117 -3.5380 -1.5679 14 7 -1.5357 -3.4998 -2.3964 15 6 -2.2072 -4.7446 -2.7779 16 6 -3.3819 -4.4295 -3.6678 17 8 -3.6331 -3.2783 -3.9554 18 7 -4.1533 -5.4268 -4.1439 19 6 -5.2955 -5.1204 -5.0085 20 6 -5.9870 -6.4009 -5.4000 21 8 -5.5688 -7.4608 -4.9976 22 8 -7.0675 -6.3641 -6.1956 23 6 0.2218 -2.3620 -1.2088 24 1 -0.4850 0.8401 0.0004 25 1 2.6944 -3.6936 0.7279 26 1 1.5477 -5.7624 0.0720 27 1 -0.4289 -5.6755 -1.3883 28 1 -1.8715 -2.6489 -2.7192 29 1 -1.5070 -5.3859 -3.3133 30 1 -2.5577 -5.2575 -1.8823 31 1 -3.9526 -6.3475 -3.9136 32 1 -5.9954 -4.4792 -4.4725 33 1 -4.9458 -4.6074 -5.9044 34 1 -7.4767 -7.2111 -6.4198 35 1 -0.1477 -1.4141 -1.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:58 Heat of formation + Delta-G solvation = -102.915942 kcal Electronic energy + Delta-G solvation = -20187.016225 eV Core-core repulsion = 16763.676108 eV Total energy + Delta-G solvation = -3423.340117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94958 -39.70623 -37.66712 -36.78356 -34.98174 -34.55980 -33.16884 -30.04071 -29.40802 -28.28229 -25.43260 -25.09655 -22.25021 -21.21153 -20.72109 -19.82383 -18.61630 -17.95857 -17.25895 -16.77911 -16.33612 -16.14229 -15.52610 -15.27571 -14.76753 -14.63636 -14.06798 -13.84677 -13.50317 -13.19187 -12.72919 -12.63518 -12.56823 -12.10111 -12.09683 -11.54273 -11.22775 -11.12840 -11.00730 -10.59590 -10.39075 -10.07324 -9.62289 -9.55566 -9.43662 -9.24394 -8.78283 -7.29382 -6.69383 -6.18363 -4.28008 1.59360 2.13163 2.44938 2.90039 3.01304 3.13712 3.17058 3.24862 3.36166 4.01363 4.33923 4.52556 4.70497 4.75181 4.79538 4.96470 5.52976 5.56350 5.87515 5.89639 5.93346 6.26731 6.55842 6.86515 7.05682 7.15125 7.17410 7.28411 7.40311 7.45995 7.80785 7.94803 7.97531 8.11549 8.20348 8.50824 8.72414 8.85676 9.04234 9.13673 10.29494 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.003167 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.421812 B = 8839.567205 C = 9722.393746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.139 3.861 10 C -0.256 4.256 11 C -0.065 4.065 12 C -0.304 4.304 13 C 0.216 3.784 14 N -0.750 5.750 15 C 0.123 3.877 16 C 0.517 3.483 17 O -0.528 6.528 18 N -0.728 5.728 19 C 0.128 3.872 20 C 0.479 3.521 21 O -0.511 6.511 22 O -0.510 6.510 23 C -0.227 4.227 24 H 0.278 0.722 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.402 0.598 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.417 0.583 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -9.639 -10.011 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.135 3.865 10 C -0.276 4.276 11 C -0.084 4.084 12 C -0.326 4.326 13 C 0.118 3.882 14 N -0.388 5.388 15 C -0.006 4.006 16 C 0.304 3.696 17 O -0.403 6.403 18 N -0.387 5.387 19 C 0.002 3.998 20 C 0.321 3.679 21 O -0.399 6.399 22 O -0.321 6.321 23 C -0.251 4.251 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.239 0.761 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.277 0.723 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.007 -8.745 -10.008 17.911 hybrid contribution -0.137 -0.069 -0.151 0.215 sum -12.143 -8.814 -10.159 18.121 Atomic orbital electron populations 1.69861 1.07500 1.28903 1.35223 1.25894 0.94684 1.01138 0.92356 0.86369 0.80509 0.80898 0.79225 1.19374 1.20458 1.18707 1.19562 0.98091 0.91269 1.40467 0.90512 1.17327 0.90040 0.91903 0.87189 1.20870 1.04792 0.92917 1.09068 1.20272 0.95084 0.96281 0.96792 1.19865 1.04792 0.94159 1.13813 1.17603 0.85973 0.94533 0.90097 1.44159 1.31778 1.05872 1.57009 1.20741 0.91649 0.90870 0.97368 1.20974 0.83649 0.84804 0.80184 1.90722 1.71005 1.20238 1.58308 1.45725 1.29587 1.11631 1.51765 1.20558 0.89598 0.91821 0.97777 1.23279 0.78228 0.91483 0.74908 1.90752 1.64217 1.32554 1.52367 1.84488 1.42352 1.42152 1.63156 1.20726 1.02441 0.95091 1.06869 0.91089 0.89335 0.89564 0.89661 0.76105 0.89927 0.89918 0.74831 0.86795 0.86801 0.72350 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.99 10.96 55.55 0.61 -20.38 16 2 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 3 Si 0.91 19.18 29.60 -169.99 -5.03 14.15 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.63 9.05 -37.74 -0.34 -12.97 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.80 5.57 -106.85 -0.60 3.20 16 10 C -0.26 -6.46 9.79 -38.84 -0.38 -6.84 16 11 C -0.07 -1.50 10.01 -39.69 -0.40 -1.89 16 12 C -0.30 -6.76 9.32 -39.09 -0.36 -7.13 16 13 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16 14 N -0.75 -14.89 5.70 -59.86 -0.34 -15.23 16 15 C 0.12 1.82 5.39 -5.20 -0.03 1.79 16 16 C 0.52 7.05 7.90 -10.99 -0.09 6.97 16 17 O -0.53 -8.98 15.67 5.55 0.09 -8.89 16 18 N -0.73 -7.29 5.53 -61.47 -0.34 -7.63 16 19 C 0.13 1.03 6.27 -5.19 -0.03 0.99 16 20 C 0.48 3.60 8.40 36.01 0.30 3.90 16 21 O -0.51 -5.22 16.43 -18.75 -0.31 -5.53 16 22 O -0.51 -2.61 13.42 -39.26 -0.53 -3.14 16 23 C -0.23 -6.05 8.53 -38.67 -0.33 -6.38 16 24 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 25 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 26 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 27 H 0.09 1.64 6.70 -52.48 -0.35 1.29 16 28 H 0.40 8.31 7.44 -40.82 -0.30 8.01 16 29 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 30 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 31 H 0.41 3.67 7.44 -40.82 -0.30 3.36 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.42 0.41 9.10 45.56 0.41 0.82 16 35 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -32.89 311.96 -6.98 -39.88 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -2.93 Total: 14.01 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.90 Total: -11.93 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.07 Total: -43.24 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.75 Total: -17.56 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.89 -6.98 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.038 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds