Wall clock time and date at job start Mon Mar 30 2020 23:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48494 * 109.46812 * 269.99998 * 3 2 1 5 5 H 1.48498 * 109.46956 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.47081 * 150.00000 * 3 2 1 7 7 C 1.39935 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 197.84194 * 7 2 1 9 9 C 1.41406 * 119.99740 * 17.83614 * 7 2 1 10 10 C 1.40787 * 120.20879 * 204.37107 * 9 7 2 11 11 C 1.37643 * 119.89194 * 179.97438 * 10 9 7 12 12 C 1.38520 * 120.32827 * 0.03979 * 11 10 9 13 13 C 1.39287 * 120.42422 * 359.97438 * 12 11 10 14 14 N 1.39687 * 119.95145 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.47534 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99922 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00145 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00047 * 179.97438 * 18 16 15 20 20 C 1.50704 * 109.47200 * 180.02562 * 19 18 16 21 21 O 1.20832 * 120.00011 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00214 * 180.02562 * 20 19 18 23 23 C 1.38321 * 120.09722 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.05393 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.83290 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78811 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99713 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.47384 * 300.00726 * 15 14 13 30 30 H 1.09001 * 109.46679 * 60.00063 * 15 14 13 31 31 H 0.97005 * 120.00247 * 0.02562 * 18 16 15 32 32 H 1.08998 * 109.47884 * 300.00191 * 19 18 16 33 33 H 1.09001 * 109.46860 * 60.00341 * 19 18 16 34 34 H 0.96693 * 117.00327 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.15860 * 179.72324 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2871 9 6 1.3519 -2.4072 -0.3740 10 6 1.8268 -3.6501 0.0863 11 6 1.1829 -4.8095 -0.2820 12 6 0.0694 -4.7602 -1.1045 13 6 -0.4117 -3.5380 -1.5679 14 7 -1.5357 -3.4998 -2.3964 15 6 -2.2072 -4.7446 -2.7779 16 6 -3.3819 -4.4295 -3.6678 17 8 -3.6331 -3.2783 -3.9554 18 7 -4.1533 -5.4268 -4.1439 19 6 -5.2955 -5.1204 -5.0085 20 6 -5.9870 -6.4009 -5.4000 21 8 -5.5688 -7.4608 -4.9976 22 8 -7.0675 -6.3641 -6.1956 23 6 0.2218 -2.3620 -1.2088 24 1 -0.4850 0.8401 0.0004 25 1 2.6944 -3.6936 0.7279 26 1 1.5477 -5.7624 0.0720 27 1 -0.4289 -5.6755 -1.3883 28 1 -1.8715 -2.6489 -2.7192 29 1 -1.5070 -5.3859 -3.3133 30 1 -2.5577 -5.2575 -1.8823 31 1 -3.9526 -6.3475 -3.9136 32 1 -5.9954 -4.4792 -4.4725 33 1 -4.9458 -4.6074 -5.9044 34 1 -7.4767 -7.2111 -6.4198 35 1 -0.1477 -1.4141 -1.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:57 Heat of formation + Delta-G solvation = -127.898989 kcal Electronic energy + Delta-G solvation = -20188.099571 eV Core-core repulsion = 16763.676108 eV Total energy + Delta-G solvation = -3424.423463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64490 -40.72769 -39.43224 -37.35556 -36.41543 -35.73215 -34.98808 -31.32140 -31.29126 -29.50894 -27.12244 -26.70703 -23.15234 -22.74216 -21.91301 -21.49054 -19.33125 -19.07631 -18.88128 -17.56888 -17.46011 -17.25284 -16.76724 -16.51893 -16.43175 -16.01141 -15.68809 -14.79659 -14.78097 -14.44051 -14.24075 -13.92414 -13.84395 -13.79460 -13.32648 -12.87879 -12.73330 -12.65898 -12.45714 -12.08789 -11.87122 -11.53606 -11.30157 -11.23138 -11.09257 -10.57466 -10.40575 -9.23090 -8.60631 -7.94010 -6.30202 1.01073 1.10265 1.33061 1.39043 1.40481 1.42414 1.52307 1.59829 2.23873 2.25626 2.81882 2.88284 3.60139 3.88175 4.12213 4.17018 4.30631 4.36376 4.45928 4.55900 4.82031 5.01452 5.07026 5.21605 5.31242 5.44586 5.47629 5.58700 5.94592 6.10899 6.20153 6.24281 6.29206 6.59094 6.83008 6.93068 6.95769 7.02823 7.08010 7.22817 8.39772 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.003167 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.421812 B = 8839.567205 C = 9722.393746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.107 3.893 10 C -0.283 4.283 11 C -0.061 4.061 12 C -0.298 4.298 13 C 0.220 3.780 14 N -0.752 5.752 15 C 0.116 3.884 16 C 0.523 3.477 17 O -0.567 6.567 18 N -0.711 5.711 19 C 0.122 3.878 20 C 0.493 3.507 21 O -0.540 6.540 22 O -0.503 6.503 23 C -0.260 4.260 24 H 0.284 0.716 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.395 0.605 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.422 0.578 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.436 0.564 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -11.135 -10.815 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.104 3.896 10 C -0.304 4.304 11 C -0.080 4.080 12 C -0.321 4.321 13 C 0.119 3.881 14 N -0.387 5.387 15 C -0.012 4.012 16 C 0.310 3.690 17 O -0.445 6.445 18 N -0.369 5.369 19 C -0.003 4.003 20 C 0.336 3.664 21 O -0.430 6.430 22 O -0.317 6.317 23 C -0.284 4.284 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.230 0.770 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.261 0.739 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.300 0.700 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.972 -10.317 -10.847 19.808 hybrid contribution -0.010 0.211 0.008 0.212 sum -12.982 -10.105 -10.840 19.701 Atomic orbital electron populations 1.69932 1.08962 1.30066 1.35916 1.26745 0.95467 1.04421 0.91379 0.85244 0.79150 0.76157 0.79352 1.18936 1.19337 1.18119 1.19815 0.98262 0.92670 1.42559 0.90878 1.17716 0.90901 0.93049 0.87946 1.21049 1.05752 0.93329 1.10223 1.20690 0.94551 0.96955 0.95768 1.20291 1.04333 0.94974 1.12518 1.17717 0.86430 0.94150 0.89793 1.44250 1.30888 1.07600 1.55938 1.21020 0.92464 0.88919 0.98760 1.20682 0.83622 0.84680 0.79983 1.90719 1.72034 1.21835 1.59923 1.45519 1.29260 1.11228 1.50876 1.20706 0.89134 0.92527 0.97888 1.22991 0.78320 0.90534 0.74563 1.90752 1.65205 1.33383 1.53680 1.84444 1.41335 1.43749 1.62149 1.20649 1.03662 0.95486 1.08611 0.90559 0.89094 0.85850 0.85693 0.76952 0.87686 0.88069 0.73864 0.86041 0.85917 0.70039 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.41 10.96 21.82 0.24 -45.18 16 2 C 0.03 1.83 5.14 85.25 0.44 2.27 16 3 Si 0.98 40.27 29.60 68.60 2.03 42.30 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.50 -28.57 9.05 23.46 0.21 -28.36 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.11 6.07 5.57 -21.31 -0.12 5.95 16 10 C -0.28 -14.44 9.79 22.75 0.22 -14.22 16 11 C -0.06 -2.68 10.01 22.20 0.22 -2.46 16 12 C -0.30 -12.58 9.32 22.59 0.21 -12.37 16 13 C 0.22 10.25 6.64 38.16 0.25 10.50 16 14 N -0.75 -29.33 5.70 -343.31 -1.96 -31.29 16 15 C 0.12 3.16 5.39 85.63 0.46 3.62 16 16 C 0.52 13.39 7.90 87.66 0.69 14.08 16 17 O -0.57 -18.93 15.67 -3.04 -0.05 -18.98 16 18 N -0.71 -12.63 5.53 -466.79 -2.58 -15.21 16 19 C 0.12 1.71 6.27 85.63 0.54 2.24 16 20 C 0.49 6.26 8.40 71.24 0.60 6.86 16 21 O -0.54 -9.86 16.43 21.95 0.36 -9.50 16 22 O -0.50 -3.81 13.42 -51.43 -0.69 -4.51 16 23 C -0.26 -14.30 8.53 22.86 0.19 -14.10 16 24 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 25 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.13 4.23 6.70 -2.91 -0.02 4.21 16 28 H 0.40 16.58 7.44 -92.71 -0.69 15.89 16 29 H 0.11 2.45 7.94 -2.39 -0.02 2.43 16 30 H 0.10 2.45 7.94 -2.39 -0.02 2.43 16 31 H 0.42 6.34 7.44 -92.70 -0.69 5.65 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.44 -0.36 9.10 -74.06 -0.67 -1.03 16 35 H 0.09 5.53 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -73.39 311.96 0.39 -73.00 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.89 Total: 35.35 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.92 Total: -25.98 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -4.30 Total: -91.68 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.38 Total: -32.99 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -73.39 0.39 -73.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.899 kcal (2) G-P(sol) polarization free energy of solvation -73.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds