Wall clock time and date at job start Tue Mar 31 2020 00:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00525 * 3 2 1 5 5 H 1.48507 * 109.46621 * 29.99814 * 3 2 1 6 6 H 1.48492 * 109.47391 * 149.99708 * 3 2 1 7 7 C 1.40033 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00526 * 170.15610 * 7 2 1 9 9 C 1.41547 * 119.99731 * 350.15631 * 7 2 1 10 10 C 1.41168 * 120.99936 * 153.73573 * 9 7 2 11 11 C 1.37587 * 119.01833 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.10992 * 0.02761 * 11 10 9 13 13 C 1.32475 * 122.22857 * 359.64382 * 12 11 10 14 14 N 1.39474 * 119.57924 * 180.34519 * 13 12 11 15 15 C 1.34776 * 120.00016 * 5.66290 * 14 13 12 16 16 O 1.21281 * 120.00058 * 5.07397 * 15 14 13 17 17 C 1.50700 * 120.00292 * 185.07925 * 15 14 13 18 18 C 1.52992 * 109.47394 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47015 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.46873 * 179.97438 * 19 18 17 21 21 O 1.20828 * 120.00362 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99923 * 179.97438 * 20 19 18 23 23 C 1.38589 * 120.84103 * 0.64672 * 13 12 11 24 24 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.49205 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44581 * 179.97438 * 11 10 9 27 27 H 0.96999 * 119.99895 * 185.65486 * 14 13 12 28 28 H 1.09003 * 109.46637 * 299.99643 * 17 15 14 29 29 H 1.09003 * 109.47110 * 59.99152 * 17 15 14 30 30 H 1.09003 * 109.47054 * 299.99531 * 18 17 15 31 31 H 1.08999 * 109.47309 * 60.00024 * 18 17 15 32 32 H 1.08996 * 109.46867 * 299.99481 * 19 18 17 33 33 H 1.08999 * 109.46865 * 59.99993 * 19 18 17 34 34 H 0.96694 * 117.00124 * 180.02562 * 22 20 19 35 35 H 1.08003 * 120.60418 * 179.67563 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2196 -0.1604 9 6 1.3155 -2.4296 0.2085 10 6 1.8136 -3.6467 -0.3047 11 6 1.1074 -4.8055 -0.0777 12 7 -0.0213 -4.7936 0.6080 13 6 -0.5277 -3.6797 1.1159 14 7 -1.7202 -3.7319 1.8373 15 6 -2.2901 -4.9220 2.1120 16 8 -1.7208 -5.9504 1.8131 17 6 -3.6347 -4.9750 2.7904 18 6 -4.0512 -6.4343 2.9839 19 6 -5.4161 -6.4880 3.6733 20 6 -5.8267 -7.9254 3.8634 21 8 -5.1018 -8.8157 3.4866 22 8 -6.9972 -8.2169 4.4522 23 6 0.1092 -2.4623 0.9342 24 1 -0.4850 0.8400 0.0004 25 1 2.7349 -3.6679 -0.8680 26 1 1.4819 -5.7405 -0.4676 27 1 -2.1393 -2.9118 2.1415 28 1 -3.5714 -4.4830 3.7611 29 1 -4.3739 -4.4653 2.1723 30 1 -4.1146 -6.9259 2.0131 31 1 -3.3122 -6.9442 3.6019 32 1 -5.3523 -5.9966 4.6441 33 1 -6.1554 -5.9779 3.0557 34 1 -7.2171 -9.1531 4.5523 35 1 -0.3097 -1.5558 1.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:47 Heat of formation + Delta-G solvation = -105.829283 kcal Electronic energy + Delta-G solvation = -20290.861099 eV Core-core repulsion = 16867.394649 eV Total energy + Delta-G solvation = -3423.466449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45197 -39.57768 -37.86313 -36.42715 -34.59872 -34.13392 -33.70662 -30.56080 -29.59943 -28.07017 -26.00516 -23.92192 -21.97702 -21.51294 -20.65790 -19.60518 -18.24959 -17.65256 -17.17132 -16.55591 -16.28320 -15.70992 -15.34076 -15.20268 -14.20231 -14.08454 -13.88263 -13.68973 -13.18445 -12.90254 -12.67012 -12.57723 -12.19758 -11.94288 -11.71320 -11.54748 -11.44522 -11.18553 -10.92283 -10.85321 -10.77675 -10.30118 -10.15308 -9.73700 -9.41091 -9.33385 -7.99409 -7.73181 -7.04268 -6.75591 -4.64015 2.01448 2.55234 2.78353 2.78844 3.00169 3.04840 3.19140 3.47196 3.68782 3.84377 4.58317 4.68060 4.79575 4.86668 5.07539 5.27700 5.30471 5.47374 5.57298 5.67542 6.01685 6.03249 6.21790 6.34121 6.58402 6.65246 6.79865 6.94791 7.12092 7.38320 7.46707 7.67742 7.78010 7.94844 8.21709 8.42632 8.69668 8.74552 8.90424 9.68453 10.08360 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.003088 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.313316 B = 9064.876184 C = 9772.816448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.334 3.666 14 N -0.660 5.660 15 C 0.496 3.504 16 O -0.481 6.481 17 C -0.140 4.140 18 C -0.095 4.095 19 C -0.113 4.113 20 C 0.475 3.525 21 O -0.509 6.509 22 O -0.522 6.522 23 C -0.239 4.239 24 H 0.281 0.719 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.408 0.592 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.408 0.592 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 -3.612 7.827 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.273 5.273 13 C 0.110 3.890 14 N -0.307 5.307 15 C 0.280 3.720 16 O -0.351 6.351 17 C -0.180 4.180 18 C -0.133 4.133 19 C -0.150 4.150 20 C 0.317 3.683 21 O -0.396 6.396 22 O -0.335 6.335 23 C -0.264 4.264 24 H 0.092 0.908 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.243 0.757 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.267 0.733 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.102 -4.875 7.606 15.102 hybrid contribution 0.372 1.500 -0.024 1.545 sum -11.730 -3.375 7.581 14.368 Atomic orbital electron populations 1.69741 1.07565 1.29153 1.35776 1.25948 0.94886 1.01443 0.92004 0.86205 0.80442 0.80158 0.79304 1.19398 1.20065 1.18448 1.19578 0.95837 0.90000 1.43146 0.90076 1.17599 0.90399 0.92276 0.86467 1.21932 1.04160 0.94424 1.10102 1.21761 0.90588 0.96543 0.94811 1.67190 1.14981 1.28138 1.16963 1.18232 0.86668 0.90890 0.93249 1.43486 1.23505 1.09081 1.54587 1.20606 0.87167 0.84028 0.80184 1.90796 1.62889 1.32617 1.48795 1.21659 0.95692 0.98533 1.02146 1.21170 0.93902 0.95572 1.02677 1.21420 0.99689 0.89548 1.04390 1.23617 0.78061 0.93232 0.73367 1.90777 1.52656 1.49626 1.46560 1.84539 1.39434 1.35359 1.74124 1.21674 1.00960 0.95555 1.08259 0.90837 0.87960 0.85879 0.75738 0.88942 0.88825 0.90021 0.90095 0.87506 0.87491 0.73293 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.36 10.70 55.55 0.59 -18.76 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 17.82 29.57 -169.99 -5.03 12.79 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.64 9.14 -37.65 -0.34 -11.98 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.98 9.90 -38.71 -0.38 -7.36 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.28 7.89 -12.52 -0.10 -14.38 16 13 C 0.33 8.09 7.40 -154.70 -1.15 6.95 16 14 N -0.66 -12.58 5.39 -11.49 -0.06 -12.65 16 15 C 0.50 8.95 7.78 -10.99 -0.09 8.87 16 16 O -0.48 -11.01 14.28 5.56 0.08 -10.93 16 17 C -0.14 -1.57 5.70 -27.89 -0.16 -1.73 16 18 C -0.10 -1.12 3.79 -26.73 -0.10 -1.22 16 19 C -0.11 -0.90 5.81 -27.88 -0.16 -1.06 16 20 C 0.48 4.78 8.33 36.00 0.30 5.08 16 21 O -0.51 -7.27 16.74 -18.75 -0.31 -7.59 16 22 O -0.52 -3.85 13.42 -39.27 -0.53 -4.37 16 23 C -0.24 -6.03 8.61 -38.48 -0.33 -6.36 16 24 H 0.28 6.16 8.29 -40.82 -0.34 5.83 16 25 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 26 H 0.12 2.63 8.06 -52.48 -0.42 2.20 16 27 H 0.41 6.21 8.70 -40.82 -0.36 5.86 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 31 H 0.08 1.11 8.06 -51.93 -0.42 0.70 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 1.44 9.10 45.56 0.41 1.86 16 35 H 0.13 3.30 6.11 -52.48 -0.32 2.98 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -34.88 312.70 -7.12 -42.00 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.18 Total: 10.52 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.30 Total: -1.34 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.43 Total: -45.79 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.76 Total: -22.89 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.88 -7.12 -42.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.832 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds