Wall clock time and date at job start Tue Mar 31 2020 00:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47291 * 270.00525 * 3 2 1 5 5 H 1.48507 * 109.46621 * 29.99814 * 3 2 1 6 6 H 1.48492 * 109.47391 * 149.99708 * 3 2 1 7 7 C 1.40033 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00526 * 170.15610 * 7 2 1 9 9 C 1.41547 * 119.99731 * 350.15631 * 7 2 1 10 10 C 1.41168 * 120.99936 * 153.73573 * 9 7 2 11 11 C 1.37587 * 119.01833 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.10992 * 0.02761 * 11 10 9 13 13 C 1.32475 * 122.22857 * 359.64382 * 12 11 10 14 14 N 1.39474 * 119.57924 * 180.34519 * 13 12 11 15 15 C 1.34776 * 120.00016 * 5.66290 * 14 13 12 16 16 O 1.21281 * 120.00058 * 5.07397 * 15 14 13 17 17 C 1.50700 * 120.00292 * 185.07925 * 15 14 13 18 18 C 1.52992 * 109.47394 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47015 * 179.97438 * 18 17 15 20 20 C 1.50698 * 109.46873 * 179.97438 * 19 18 17 21 21 O 1.20828 * 120.00362 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99923 * 179.97438 * 20 19 18 23 23 C 1.38589 * 120.84103 * 0.64672 * 13 12 11 24 24 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.49205 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.44581 * 179.97438 * 11 10 9 27 27 H 0.96999 * 119.99895 * 185.65486 * 14 13 12 28 28 H 1.09003 * 109.46637 * 299.99643 * 17 15 14 29 29 H 1.09003 * 109.47110 * 59.99152 * 17 15 14 30 30 H 1.09003 * 109.47054 * 299.99531 * 18 17 15 31 31 H 1.08999 * 109.47309 * 60.00024 * 18 17 15 32 32 H 1.08996 * 109.46867 * 299.99481 * 19 18 17 33 33 H 1.08999 * 109.46865 * 59.99993 * 19 18 17 34 34 H 0.96694 * 117.00124 * 180.02562 * 22 20 19 35 35 H 1.08003 * 120.60418 * 179.67563 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2196 -0.1604 9 6 1.3155 -2.4296 0.2085 10 6 1.8136 -3.6467 -0.3047 11 6 1.1074 -4.8055 -0.0777 12 7 -0.0213 -4.7936 0.6080 13 6 -0.5277 -3.6797 1.1159 14 7 -1.7202 -3.7319 1.8373 15 6 -2.2901 -4.9220 2.1120 16 8 -1.7208 -5.9504 1.8131 17 6 -3.6347 -4.9750 2.7904 18 6 -4.0512 -6.4343 2.9839 19 6 -5.4161 -6.4880 3.6733 20 6 -5.8267 -7.9254 3.8634 21 8 -5.1018 -8.8157 3.4866 22 8 -6.9972 -8.2169 4.4522 23 6 0.1092 -2.4623 0.9342 24 1 -0.4850 0.8400 0.0004 25 1 2.7349 -3.6679 -0.8680 26 1 1.4819 -5.7405 -0.4676 27 1 -2.1393 -2.9118 2.1415 28 1 -3.5714 -4.4830 3.7611 29 1 -4.3739 -4.4653 2.1723 30 1 -4.1146 -6.9259 2.0131 31 1 -3.3122 -6.9442 3.6019 32 1 -5.3523 -5.9966 4.6441 33 1 -6.1554 -5.9779 3.0557 34 1 -7.2171 -9.1531 4.5523 35 1 -0.3097 -1.5558 1.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:46 Heat of formation + Delta-G solvation = -130.540034 kcal Electronic energy + Delta-G solvation = -20291.932637 eV Core-core repulsion = 16867.394649 eV Total energy + Delta-G solvation = -3424.537988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34226 -41.07111 -39.57767 -37.16352 -36.16479 -35.47119 -35.27195 -32.45016 -30.97525 -29.40070 -27.90760 -25.02835 -23.82723 -22.97076 -21.60828 -21.07946 -19.44470 -19.01960 -18.47121 -17.48152 -17.35470 -17.23667 -16.88343 -16.46455 -16.05203 -15.73728 -15.14933 -15.11173 -14.60514 -14.34276 -14.13830 -14.01112 -13.21009 -13.13953 -12.91504 -12.84696 -12.68542 -12.50136 -12.45273 -12.08180 -11.89746 -11.73464 -11.61769 -11.46611 -11.17017 -10.93284 -9.92779 -9.59525 -8.86054 -8.57173 -6.57650 0.75487 1.00468 1.27027 1.42436 1.53492 1.57577 1.94103 2.05574 2.21654 2.39713 2.83739 3.60983 3.74515 4.00420 4.02453 4.05696 4.30327 4.59440 4.65608 4.70781 4.75743 4.83891 4.88892 4.94261 5.11131 5.12919 5.25150 5.35162 5.48399 5.66946 5.68594 5.93334 6.16952 6.50529 6.64883 6.79902 6.84582 7.03821 7.38341 7.86011 8.29997 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.003088 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.313316 B = 9064.876184 C = 9772.816448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.111 3.889 10 C -0.298 4.298 11 C 0.110 3.890 12 N -0.581 5.581 13 C 0.330 3.670 14 N -0.653 5.653 15 C 0.487 3.513 16 O -0.536 6.536 17 C -0.121 4.121 18 C -0.092 4.092 19 C -0.104 4.104 20 C 0.478 3.522 21 O -0.564 6.564 22 O -0.513 6.513 23 C -0.256 4.256 24 H 0.292 0.708 25 H 0.115 0.885 26 H 0.147 0.853 27 H 0.425 0.575 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.425 0.575 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 -1.571 8.938 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.322 4.322 11 C -0.044 4.044 12 N -0.301 5.301 13 C 0.104 3.896 14 N -0.301 5.301 15 C 0.275 3.725 16 O -0.410 6.410 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.140 4.140 20 C 0.323 3.677 21 O -0.455 6.455 22 O -0.326 6.326 23 C -0.281 4.281 24 H 0.103 0.897 25 H 0.133 0.867 26 H 0.164 0.836 27 H 0.264 0.736 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.286 0.714 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.941 -2.826 8.748 16.699 hybrid contribution 0.847 0.817 -0.359 1.230 sum -13.093 -2.009 8.389 15.680 Atomic orbital electron populations 1.69767 1.08818 1.30837 1.34762 1.26808 0.95753 1.04467 0.90910 0.85079 0.78957 0.75479 0.79447 1.18911 1.18600 1.18428 1.19861 0.96148 0.90954 1.44524 0.90018 1.18051 0.91361 0.93242 0.87115 1.22108 1.04924 0.94343 1.10787 1.22182 0.90368 0.97476 0.94366 1.67325 1.15784 1.28978 1.18044 1.18538 0.87973 0.90207 0.92846 1.43571 1.22027 1.10733 1.53782 1.21923 0.88928 0.82573 0.79033 1.90773 1.64816 1.34366 1.51041 1.21689 0.91612 0.98817 1.03958 1.21043 0.95764 0.95329 1.00924 1.21424 0.97715 0.88666 1.06241 1.24056 0.77877 0.93669 0.72136 1.90773 1.54371 1.51322 1.49054 1.84499 1.37959 1.37014 1.73117 1.21674 1.01374 0.95909 1.09184 0.89680 0.86706 0.83610 0.73633 0.84772 0.85197 0.93273 0.93026 0.84110 0.84309 0.71383 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.23 10.70 21.84 0.23 -38.99 16 2 C 0.04 1.75 5.31 85.29 0.45 2.20 16 3 Si 0.99 35.58 29.57 68.60 2.03 37.60 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.48 -25.11 9.14 23.52 0.21 -24.90 16 8 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 9 C 0.11 5.96 5.60 -21.11 -0.12 5.84 16 10 C -0.30 -15.11 9.90 22.84 0.23 -14.88 16 11 C 0.11 5.48 11.15 84.50 0.94 6.42 16 12 N -0.58 -30.74 7.89 -193.54 -1.53 -32.27 16 13 C 0.33 16.25 7.40 132.75 0.98 17.24 16 14 N -0.65 -24.52 5.39 -308.66 -1.66 -26.19 16 15 C 0.49 17.32 7.78 87.66 0.68 18.00 16 16 O -0.54 -25.22 14.28 -3.03 -0.04 -25.26 16 17 C -0.12 -2.36 5.70 29.85 0.17 -2.19 16 18 C -0.09 -2.06 3.79 30.59 0.12 -1.94 16 19 C -0.10 -1.30 5.81 29.85 0.17 -1.13 16 20 C 0.48 8.86 8.33 71.24 0.59 9.45 16 21 O -0.56 -16.36 16.74 21.96 0.37 -15.99 16 22 O -0.51 -6.27 13.42 -51.45 -0.69 -6.96 16 23 C -0.26 -13.16 8.61 22.98 0.20 -12.96 16 24 H 0.29 12.46 8.29 -92.71 -0.77 11.69 16 25 H 0.11 5.33 8.06 -2.91 -0.02 5.30 16 26 H 0.15 6.34 8.06 -2.91 -0.02 6.31 16 27 H 0.43 12.30 8.70 -92.71 -0.81 11.49 16 28 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 31 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 32 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 2.19 9.10 -74.06 -0.67 1.52 16 35 H 0.13 6.64 6.11 -2.91 -0.02 6.62 16 Total: -1.00 -80.26 312.70 3.01 -77.25 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -0.33 Total: 29.67 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.63 Total: 1.14 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -2.96 Total: -97.45 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.37 Total: -48.22 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.60 kcal Total: -80.26 3.01 -77.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.288 kcal (2) G-P(sol) polarization free energy of solvation -80.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds