Wall clock time and date at job start Tue Mar 31 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38621 * 120.10946 * 2 1 4 4 N 1.39980 * 119.99768 * 359.72864 * 3 2 1 5 5 C 1.34776 * 119.99730 * 147.12616 * 4 3 2 6 6 O 1.21581 * 120.00552 * 3.27181 * 5 4 3 7 7 N 1.34780 * 119.99731 * 183.26704 * 5 4 3 8 8 C 1.46499 * 120.00166 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00231 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99787 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00124 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47296 * 90.00261 * 13 11 9 15 15 H 1.48496 * 109.47282 * 210.00476 * 13 11 9 16 16 H 1.48505 * 109.47104 * 330.00269 * 13 11 9 17 17 C 1.38950 * 120.00304 * 179.69843 * 3 2 1 18 18 C 1.38264 * 120.23609 * 0.02964 * 17 3 2 19 19 C 1.37962 * 120.22633 * 359.97438 * 18 17 3 20 20 C 1.39508 * 120.11373 * 179.72585 * 2 1 3 21 21 C 1.47740 * 120.11347 * 0.27205 * 20 2 1 22 22 O 1.21466 * 120.00478 * 6.41116 * 21 20 2 23 23 O 1.34710 * 119.99618 * 186.40229 * 21 20 2 24 24 H 1.09001 * 109.47138 * 97.54434 * 1 2 3 25 25 H 1.08992 * 109.47384 * 217.54707 * 1 2 3 26 26 H 1.09003 * 109.47524 * 337.54676 * 1 2 3 27 27 H 0.97002 * 119.99791 * 327.11829 * 4 3 2 28 28 H 0.97005 * 120.00129 * 0.02562 * 7 5 4 29 29 H 1.08994 * 109.47227 * 300.00559 * 8 7 5 30 30 H 1.08997 * 109.46838 * 59.99927 * 8 7 5 31 31 H 0.96995 * 119.99310 * 179.97438 * 12 11 9 32 32 H 1.08000 * 119.88024 * 180.02562 * 17 3 2 33 33 H 1.08004 * 119.88471 * 180.02562 * 18 17 3 34 34 H 1.07999 * 120.00535 * 179.97438 * 19 18 17 35 35 H 0.96700 * 116.99983 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2024 1.1992 0.0000 4 7 1.5048 2.4127 -0.0057 5 6 2.0163 3.4870 0.6274 6 8 3.1107 3.4192 1.1526 7 7 1.3145 4.6366 0.6781 8 6 1.8702 5.8042 1.3668 9 6 0.8951 6.9499 1.2796 10 1 -0.0447 6.8211 0.7634 11 6 1.2023 8.1623 1.8600 12 7 2.3466 8.3189 2.4892 13 14 -0.0066 9.5822 1.7526 14 1 -0.9259 9.5389 2.9180 15 1 0.7375 10.8673 1.7567 16 1 -0.7926 9.4694 0.4977 17 6 3.5919 1.1966 0.0063 18 6 4.2859 0.0008 0.0120 19 6 3.6035 -1.1983 0.0120 20 6 2.2069 -1.2068 0.0058 21 6 1.4733 -2.4892 0.0058 22 8 0.2649 -2.4977 -0.1166 23 8 2.1447 -3.6491 0.1415 24 1 -0.3633 -0.1349 -1.0188 25 1 -0.3634 -0.8147 0.6262 26 1 -0.3634 0.9498 0.3925 27 1 0.6533 2.4805 -0.4655 28 1 0.4412 4.6907 0.2593 29 1 2.0483 5.5579 2.4135 30 1 2.8105 6.0902 0.8958 31 1 2.5628 9.1720 2.8971 32 1 4.1317 2.1320 0.0067 33 1 5.3659 0.0054 0.0174 34 1 4.1492 -2.1303 0.0160 35 1 1.6217 -4.4624 0.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600043277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:03 Heat of formation + Delta-G solvation = -93.202755 kcal Electronic energy + Delta-G solvation = -20675.479564 eV Core-core repulsion = 17252.560642 eV Total energy + Delta-G solvation = -3422.918922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.90255 -39.98050 -38.30685 -36.35601 -34.78876 -34.26062 -32.51367 -32.42929 -30.10604 -27.50966 -26.77224 -24.50120 -23.16537 -21.74827 -21.17487 -20.22769 -18.48677 -18.25879 -17.63370 -16.22579 -15.94485 -15.84216 -15.65575 -15.40981 -14.81306 -14.53628 -14.12808 -13.72330 -13.61491 -13.27018 -13.14022 -12.54969 -12.27419 -12.05222 -12.03549 -11.92623 -11.70420 -11.39113 -11.01041 -10.94427 -10.39117 -10.35652 -10.20688 -9.53255 -9.44735 -8.90648 -8.80760 -8.21365 -7.80131 -6.21160 -4.28330 0.64614 1.25896 2.43785 2.72815 3.15107 3.21888 3.28704 3.31195 3.52319 3.87788 4.27997 4.68677 4.73773 4.85528 5.00803 5.03718 5.15343 5.35688 5.50288 5.63958 5.66043 5.76221 5.99856 6.20208 6.27803 6.36156 6.38891 6.54892 6.93758 7.02379 7.32396 7.43568 7.46446 7.70378 7.75339 7.93310 8.61391 8.76907 9.09853 9.38609 10.88973 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038974 B = 0.003242 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.259959 B = 8635.458396 C = 9217.205815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C 0.167 3.833 4 N -0.692 5.692 5 C 0.691 3.309 6 O -0.582 6.582 7 N -0.720 5.720 8 C 0.266 3.734 9 C -0.545 4.545 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.884 5.884 13 Si 0.905 3.095 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.081 4.081 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.121 4.121 21 C 0.529 3.471 22 O -0.511 6.511 23 O -0.513 6.513 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.405 0.595 28 H 0.389 0.611 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -20.078 -6.969 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.058 4.058 3 C 0.070 3.930 4 N -0.340 5.340 5 C 0.391 3.609 6 O -0.461 6.461 7 N -0.371 5.371 8 C 0.145 3.855 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.102 4.102 18 C -0.140 4.140 19 C -0.102 4.102 20 C -0.123 4.123 21 C 0.375 3.625 22 O -0.402 6.402 23 O -0.325 6.325 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.222 0.778 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.017 -19.459 -6.359 20.472 hybrid contribution -1.733 0.369 -0.359 1.808 sum -1.750 -19.091 -6.718 20.314 Atomic orbital electron populations 1.21008 0.89845 1.03342 1.03451 1.19672 0.96680 0.90186 0.99291 1.17181 0.91161 0.84092 1.00545 1.42809 1.25329 1.08733 1.57126 1.16148 0.84780 0.80369 0.79574 1.90860 1.20342 1.83136 1.51719 1.45795 1.21284 1.11353 1.58678 1.19072 0.94611 0.79562 0.92257 1.21198 1.03867 0.96159 1.37080 0.91855 1.24943 0.95581 0.98724 0.94711 1.69975 1.21979 1.25426 1.34785 0.86391 0.80636 0.81193 0.78550 1.20438 1.20968 1.19740 1.21816 0.92768 1.00241 0.95334 1.21056 1.00432 0.91425 1.01093 1.21319 0.92418 0.98965 0.97493 1.18491 0.93451 0.89015 1.11344 1.20898 0.85281 0.84211 0.72147 1.90846 1.15361 1.87634 1.46314 1.84570 1.45482 1.17153 1.85301 0.90584 0.88953 0.91987 0.75933 0.77819 0.95440 0.95404 0.92370 0.82837 0.84900 0.84735 0.72988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.30 36.01 0.30 -1.11 16 2 C -0.05 -0.72 5.93 -104.01 -0.62 -1.34 16 3 C 0.17 2.45 6.31 -83.73 -0.53 1.92 16 4 N -0.69 -10.34 4.78 -14.25 -0.07 -10.40 16 5 C 0.69 13.55 8.41 -86.92 -0.73 12.82 16 6 O -0.58 -13.49 13.67 5.29 0.07 -13.42 16 7 N -0.72 -14.63 5.55 -66.42 -0.37 -15.00 16 8 C 0.27 6.85 5.43 -5.20 -0.03 6.82 16 9 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 10 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 17 C -0.08 -1.20 8.70 -39.31 -0.34 -1.54 16 18 C -0.12 -1.43 10.02 -39.67 -0.40 -1.83 16 19 C -0.08 -0.91 9.61 -39.15 -0.38 -1.28 16 20 C -0.12 -1.48 5.87 -105.01 -0.62 -2.10 16 21 C 0.53 5.92 8.20 34.61 0.28 6.20 16 22 O -0.51 -6.65 14.16 -19.24 -0.27 -6.92 16 23 O -0.51 -4.08 12.70 -40.52 -0.51 -4.59 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.16 5.93 -51.93 -0.31 0.85 16 26 H 0.06 0.68 6.77 -51.93 -0.35 0.33 16 27 H 0.40 4.76 7.62 -40.82 -0.31 4.44 16 28 H 0.39 6.68 8.34 -40.82 -0.34 6.34 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.15 2.59 6.08 -52.49 -0.32 2.27 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.17 7.62 -52.49 -0.40 0.77 16 35 H 0.41 1.36 9.11 45.56 0.42 1.78 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -33.16 306.38 -7.13 -40.29 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -2.84 Total: 9.33 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -3.47 Total: 5.48 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.30 Total: -50.28 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.71 Total: -24.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.16 -7.13 -40.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600043277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.913 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds